IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.73   STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
768	 52.74	0	892550..893461	-	303	104774025	-	Ldb1031	-	permease
769	 54.01	0	896345..896968	+	207	104774026	-	Ldb1036	-	putative fructose-2,6-bisphosphatase
770	 51.64	0	897552..898070	-	172	104774027	-	Ldb1039	-	hypothetical protein
771	 53.02	0	899441..900517	-	358	104774028	xerS	Ldb1043	-	site-specific tyrosine recombinase XerS
772	 55.61	0	900750..901898	+	382	104774029	-	Ldb1044	-	glycerate kinase
773	 53.25	0	902038..903207	+	389	104774030	-	Ldb1045	-	hypothetical protein
774	 51.12	0	903232..903810	+	192	104774031	-	Ldb1046	-	hypothetical protein
775	 39.39	-2	903969..904265	+	98	104774032	-	Ldb1047	-	hypothetical protein
776	 43.79	-1	905512..908532	+	1006	104774033	hsdR	Ldb1051	-	Type I restriction-modification system, restriction subunit
777	 42.21	-1	908546..910144	+	532	104774034	hsdM	Ldb1052	-	Type I restriction-modification system, modification subunit
778	 37.06	-2	910144..911379	+	411	104774035	hsdS1	Ldb1053	-	Type I restriction-modification system, specificity subunit
779	 38.13	-2	911418..912335	-	305	104774036	-	Ldb1054	-	integrase/recombinase
780	 38.06	-2	912377..913540	-	387	104774037	hsdS2	Ldb1055	-	Type I restriction-modification system, specificity subunit
781	 50.00	0	915072..915773	+	233	104774038	-	Ldb1059	-	hypothetical protein
782	 47.75	0	915837..917459	-	540	104774039	-	Ldb1060	-	peptide binding protein
783	 52.27	0	923046..924122	-	358	104774040	carA2a	Ldb1070	-	carbamoyl phosphate synthase small subunit
784	 49.96	0	924995..926281	-	428	104774041	-	Ldb1074	-	putative multidrug efflux protein
785	 47.92	0	926375..926806	+	143	104774042	-	Ldb1075	-	multidrug efflux pump transcriptional regulator
786	 45.43	-1	926740..927111	+	123	104774043	-	Ldb1076	-	hypothetical protein
787	 48.85	0	928450..929016	+	188	104774044	-	Ldb1079	-	putative integrase/recombinase
788	 46.56	0	930890..931078	+	62	104774045	-	Ldb1083	-	hypothetical protein
789	 48.76	0	930993..931355	+	120	104774046	-	Ldb1084	-	hypothetical protein
790	 40.00	-2	931394..931888	+	164	104774047	-	Ldb1085	-	hypothetical protein
791	 48.37	0	931901..932299	+	132	104774048	-	Ldb1086	-	putative phosphotyrosine protein phosphatase
792	 47.57	0	932531..932839	+	102	104774049	-	Ldb1087	-	hypothetical protein
793	 49.67	0	933001..933753	+	250	104774050	-	Ldb1088	-	ABC transporter, ATP-binding protein
794	 48.00	0	933776..935650	+	624	104774051	-	Ldb1089	-	ABC transporter, permease protein
795	 48.30	0	935713..935859	-	48	104774052	-	Ldb1090	-	hypothetical protein
796	 40.74	-1	936052..936105	+	17	104774053	-	Ldb1091	-	hypothetical protein
797	 42.59	-1	937083..938552	+	489	104774054	-	Ldb1095	-	putative fumarate reductase (flavoprotein)
798	 43.00	-1	939916..940122	+	68	104774055	-	Ldb1099	-	hypothetical protein
799	 41.46	-1	940240..940485	+	81	104774056	-	Ldb1100	-	hypothetical protein
800	 45.88	0	940744..941301	-	185	104774057	-	Ldb1101	-	putative acetyltransferase
801	 49.83	0	942754..943341	+	195	104774058	ppiB	Ldb1104	-	peptidyl-prolyl cis-trans isomerase (rotamase),cyclophilin type
802	 45.88	0	944135..944692	+	185	104774059	-	Ldb1106	-	putative acetyltransferase
803	 41.46	-1	944951..945196	-	81	104774060	-	Ldb1107	-	hypothetical protein
804	 43.00	-1	945314..945520	-	68	104774061	-	Ldb1108	-	hypothetical protein
805	 42.59	-1	946884..948353	-	489	104774062	-	Ldb1112	-	putative fumarate reductase (flavoprotein)
806	 40.74	-1	949331..949384	-	17	104774063	-	Ldb1116	-	hypothetical protein
807	 48.30	0	949577..949723	+	48	104774064	-	Ldb1117	-	hypothetical protein
808	 48.00	0	949786..951660	-	624	104774065	-	Ldb1118	-	ABC transporter, permease protein
809	 49.67	0	951683..952435	-	250	104774066	-	Ldb1119	-	ABC transporter, ATP-binding protein
810	 47.57	0	952597..952905	-	102	104774067	-	Ldb1120	-	hypothetical protein
811	 48.37	0	953137..953535	-	132	104774068	-	Ldb1121	-	putative phosphotyrosine protein phosphatase
812	 40.00	-2	953548..954042	-	164	104774069	-	Ldb1122	-	hypothetical protein
813	 48.76	0	954081..954443	-	120	104774070	-	Ldb1123	-	hypothetical protein
814	 46.56	0	954358..954546	-	62	104774071	-	Ldb1124	-	hypothetical protein
815	 48.85	0	956420..956986	-	188	104774072	-	Ldb1128	-	putative integrase/recombinase
816	 45.43	-1	958325..958696	-	123	104774073	-	Ldb1131	-	hypothetical protein
817	 47.92	0	958630..959061	-	143	104774074	-	Ldb1132	-	multidrug efflux pump transcriptional regulator
818	 49.96	0	959155..960441	+	428	104774075	-	Ldb1133	-	putative multidrug efflux protein
819	 52.27	0	961314..962390	+	358	104774076	carA2b	Ldb1137	-	carbamoyl phosphate synthase small subunit
820	 43.84	-1	966737..968677	-	646	104774077	-	Ldb1145	-	hypothetical protein
821	 45.41	-1	968681..972490	-	1269	104774078	-	Ldb1146	-	hypothetical protein
822	 50.79	0	972694..973644	-	316	104774079	-	Ldb1147	-	D-isomer specific 2-hydroxyacid dehydrogenase
823	 52.37	0	974293..976020	+	575	104774080	-	Ldb1149	-	ABC transporter, ATP-binding / permease protein
824	 49.77	0	976020..977777	+	585	104774081	-	Ldb1150	-	ABC transporter, ATP-binding/permease protein
825	 51.13	0	977860..978168	-	102	104774082	-	Ldb1151	-	hypothetical protein
826	 50.67	0	978609..979283	-	224	104774083	-	Ldb1153	-	hypothetical protein
827	 39.54	-2	980458..980940	-	160	104774084	-	Ldb1156	-	hypothetical protein
828	 52.43	0	981147..981413	-	88	104774085	-	Ldb1157	-	putative acetyltransferase
829	 50.14	0	981415..982134	-	239	104774086	pgp	Ldb1158	-	putative phosphoglycolate phosphatase
830	 44.97	-1	982286..982474	+	62	104774087	-	Ldb1159	-	hypothetical protein
831	 51.46	0	983004..983174	-	56	104774088	-	Ldb1160	-	hypothetical protein
832	 51.17	0	983205..983675	-	156	104774089	-	Ldb1161	-	hypothetical protein
833	 45.55	0	984124..984909	-	261	104774090	-	Ldb1162	-	putative exonuclease
834	 46.63	0	984914..985507	-	197	104774091	-	Ldb1163	-	hypothetical protein
835	 50.65	0	985521..986294	-	257	104774092	-	Ldb1164	-	hypothetical protein
836	 45.72	0	986287..986859	-	190	104774093	-	Ldb1165	-	acyltransferase
837	 40.00	-2	988501..988695	-	64	104774094	-	Ldb1169	-	hypothetical protein
838	 51.65	0	988742..989587	-	281	104774095	-	Ldb1170	-	hypothetical protein
839	 52.63	0	989635..991059	-	474	104774096	-	Ldb1171	-	putative RNA methylase
840	 50.74	0	991052..991999	-	315	104774097	-	Ldb1172	-	hypothetical protein
841	 50.74	0	992026..992766	-	246	104774098	-	Ldb1173	-	hypothetical protein
842	 54.80	0	992877..993053	-	58	104774099	-	Ldb1174	-	hypothetical protein
843	 52.29	0	993223..993834	-	203	104774100	pcp	Ldb1175	-	pyroglutamyl-peptidase I
844	 53.25	0	993913..994665	+	250	104774101	-	Ldb1176	-	hypothetical protein
845	 54.72	0	995832..997262	-	476	104774102	gapN	Ldb1179	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
846	 51.02	0	997363..998883	-	506	104774103	-	Ldb1180	-	glycine betaine ABC transporter, substrate binding / permease protein
847	 52.49	0	998887..999810	-	307	104774104	-	Ldb1181	-	glycine betaine ABC transporter, ATP-binding protein
848	 48.92	0	1000141..1000602	+	153	104774105	-	Ldb1182	-	DeoR family transcriptional regulator
849	 50.11	0	1001537..1002448	-	303	104774106	htpX2	Ldb1185	-	protease
850	 36.62	-2	1002600..1003025	-	141	104774107	-	Ldb1186	-	hypothetical protein
851	 51.83	0	1003169..1004341	-	390	104774108	patC	Ldb1187	-	cystathionine beta-lyase
852	 33.95	-2	1004359..1004520	-	53	104774109	-	Ldb1188	-	hypothetical protein
853	 47.58	0	1004611..1010451	-	1946	104774110	prtB	Ldb1189	-	proteinase precursor
854	 51.21	0	1011488..1011817	-	109	104774111	-	Ldb1191	-	hypothetical protein
855	 47.89	0	1011780..1011992	-	70	104774112	-	Ldb1192	-	hypothetical protein
856	 53.82	0	1012113..1012727	+	204	104774113	-	Ldb1193	-	hypothetical protein
857	 54.18	0	1013078..1014094	+	338	104774114	asnA	Ldb1194	-	asparagine synthetase AsnA
858	 53.73	0	1014170..1015468	+	432	104774115	asnC	Ldb1195	-	asparaginyl-tRNA synthetase
859	 52.56	0	1018109..1021135	-	1008	104774116	lacZ	Ldb1201	-	Beta-galactosidase
860	 53.13	0	1021139..1023022	-	627	104774117	lacS	Ldb1202	-	lactose permease
861	 42.86	-1	1023406..1023489	-	27	104774118	-	Ldb1204	-	hypothetical protein
862	 45.24	-1	1023444..1023527	-	27	104774119	-	Ldb1205	-	hypothetical protein
863	 43.87	-1	1023638..1024861	+	407	104774120	-	Ldb1206	-	transposase
864	 49.58	0	1027620..1028456	+	278	104774121	-	Ldb1214	-	hypothetical protein
865	 49.38	0	1028499..1029065	+	188	104774122	lepB	Ldb1215	-	signal peptidase I
866	 50.00	0	1029135..1029320	+	61	104774123	-	Ldb1216	-	hypothetical protein
867	 52.78	0	1029712..1030950	-	412	104774124	pepT1	Ldb1217	-	peptidase T
50.73	MEAN

5.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.