IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
713	 51.26	0	811351..812226	+	291	104773970	-	Ldb0930	-	tRNA/rRNA methyltransferase
714	 44.44	-1	817772..818014	+	80	104773971	-	Ldb0952	-	hypothetical protein
715	 42.18	-1	818975..819268	-	97	104773972	-	Ldb0954	-	hypothetical protein
716	 44.44	-1	819466..819744	-	92	104773973	-	Ldb0955	-	hypothetical protein
717	 53.14	0	820306..821148	+	280	104773974	pstS	Ldb0956	-	phosphate ABC transporter phosphate-binding protein
718	 53.69	0	821168..822076	+	302	104773975	pstC	Ldb0957	-	phosphate ABC transporter permease
719	 51.94	0	822079..822954	+	291	104773976	pstA	Ldb0958	-	phosphate ABC transporter permease
720	 50.33	0	822954..823712	+	252	104773977	pstB	Ldb0959	-	phosphate ABC transporter ATP-binding protein
721	 46.79	0	823731..824369	+	212	104773978	phoU	Ldb0960	-	phosphate uptake regulator
722	 51.42	0	825128..826786	+	552	104773979	phoR	Ldb0963	-	phosphate regulon sensor histidine kinase
723	 53.42	0	828348..829004	-	218	104773980	-	Ldb0967	-	hypothetical protein
724	 50.44	0	829059..830087	+	342	104773981	-	Ldb0968	-	hypothetical protein
725	 52.72	0	830146..830697	-	183	104773982	-	Ldb0969	-	hypothetical protein
726	 53.78	0	832157..832924	-	255	104773983	-	Ldb0973	-	ABC transporter, ATP-binding protein
727	 52.63	0	832914..833732	-	272	104773984	-	Ldb0974	-	ABC transporter, ATP-binding protein
728	 55.34	0	833711..834487	-	258	104773985	-	Ldb0975	-	ABC transporter, permease protein
729	 52.99	0	834484..835119	-	211	104773986	-	Ldb0976	-	hypothetical protein
730	 45.37	-1	835511..835618	+	35	104773987	-	Ldb0977	-	hypothetical protein
731	 50.00	0	837249..837338	+	29	104773988	-	Ldb0980	-	hypothetical protein
732	 47.72	0	837356..838384	+	342	104773989	-	Ldb0981	-	putative signal transduction protein
733	 54.47	0	838391..838972	+	193	104773990	-	Ldb0982	-	hypothetical protein
734	 49.13	0	839090..839893	+	267	104773991	-	Ldb0983	-	HAD superfamily hydrolase
735	 51.49	0	843031..843669	-	212	104773992	-	Ldb0992	-	hypothetical protein
736	 55.28	0	843766..845697	+	643	104773993	parE	Ldb0993	-	DNA topoisomerase IV subunit B
737	 54.47	0	845712..848195	+	827	104773994	parC	Ldb0994	-	DNA topoisomerase IV subunit A
738	 50.00	0	848310..849245	+	311	104773995	ppaC	Ldb0995	-	putative manganese-dependent inorganic pyrophosphatase
739	 53.27	0	849451..850428	-	325	104773996	fni	Ldb0996	-	isopentenyl pyrophosphate isomerase
740	 52.35	0	850487..851569	-	360	104773997	mvaK	Ldb0997	-	phosphomevalonate kinase
741	 52.40	0	851646..852605	-	319	104773998	mvaD	Ldb0998	-	mevalonate diphosphate decarboxylase
742	 51.26	0	852661..853536	-	291	104773999	mvk	Ldb0999	-	mevalonate kinase
743	 53.90	0	853706..857245	+	1179	104774000	addB	Ldb1000	-	ATP-dependent deoxyribonuclease subunit B
744	 53.58	0	857272..860955	+	1227	104774001	addA	Ldb1001	-	ATP-dependent deoxyribonuclease subunit A
745	 53.88	0	860984..863776	+	930	104774002	dinG	Ldb1002	-	ATP-dependent DNA helicase DinG
746	 49.49	0	863769..864263	+	164	104774003	-	Ldb1003	-	hypothetical protein
747	 53.89	0	864325..865623	+	432	104774004	asnC	Ldb1004	-	asparaginyl-tRNA synthetase
748	 52.47	0	865715..866362	+	215	104774005	dnaD	Ldb1005	-	DNA replication protein DnaD
749	 55.56	0	866384..867013	+	209	104774006	nth	Ldb1006	-	endonuclease III
750	 46.77	0	867048..867851	+	267	104774007	-	Ldb1007	-	HAD superfamily hydrolase
751	 52.20	0	868797..869798	-	333	104774008	-	Ldb1010	-	D-isomer specific 2-hydroxyacid dehydrogenase
752	 51.74	0	869848..871776	-	642	104774009	-	Ldb1011	-	putative acylaminoacyl-peptidase
753	 53.73	0	871923..874256	-	777	104774010	pbp1A	Ldb1012	-	penicillin-binding protein 1A
754	 50.55	0	874222..874854	-	210	104774011	recU	Ldb1013	-	Holliday junction-specific endonuclease
755	 52.05	0	875015..875575	+	186	104774012	-	Ldb1014	-	hypothetical protein
756	 46.45	0	875651..876115	+	154	104774013	-	Ldb1015	-	hypothetical protein
757	 53.51	0	876632..877756	+	374	104774014	-	Ldb1016	-	putative DNA methylase
758	 44.82	-1	879155..879511	+	118	104774015	-	Ldb1019	-	hypothetical protein
759	 52.26	0	879477..881183	+	568	104774016	fhs	Ldb1020	-	formate--tetrahydrofolate ligase
760	 46.14	0	881195..881647	+	150	104774017	lsp	Ldb1021	-	Signal peptidase II
761	 56.25	+1	881649..882560	+	303	104774018	-	Ldb1022	-	pseudouridylate synthase
762	 51.99	0	882562..883617	+	351	104774019	carA3	Ldb1023	-	carbamoyl phosphate synthase small subunit
763	 52.60	0	883617..886808	+	1063	104774020	carB	Ldb1024	-	carbamoyl phosphate synthase large subunit
764	 47.52	0	886902..887183	+	93	104774021	-	Ldb1025	-	hypothetical protein
765	 54.17	0	887183..888526	+	447	104774022	-	Ldb1026	-	hypothetical protein
766	 50.59	0	888593..890284	-	563	104774023	fbpA	Ldb1027	-	putative fibronectin-binding protein
767	 47.34	0	891420..892490	+	356	104774024	-	Ldb1030	-	hypothetical protein
768	 52.74	0	892550..893461	-	303	104774025	-	Ldb1031	-	permease
769	 54.01	0	896345..896968	+	207	104774026	-	Ldb1036	-	putative fructose-2,6-bisphosphatase
770	 51.64	0	897552..898070	-	172	104774027	-	Ldb1039	-	hypothetical protein
771	 53.02	0	899441..900517	-	358	104774028	xerS	Ldb1043	-	site-specific tyrosine recombinase XerS
772	 55.61	0	900750..901898	+	382	104774029	-	Ldb1044	-	glycerate kinase
773	 53.25	0	902038..903207	+	389	104774030	-	Ldb1045	-	hypothetical protein
774	 51.12	0	903232..903810	+	192	104774031	-	Ldb1046	-	hypothetical protein
775	 39.39	-2	903969..904265	+	98	104774032	-	Ldb1047	-	hypothetical protein
776	 43.79	-1	905512..908532	+	1006	104774033	hsdR	Ldb1051	-	Type I restriction-modification system, restriction subunit
777	 42.21	-1	908546..910144	+	532	104774034	hsdM	Ldb1052	-	Type I restriction-modification system, modification subunit
778	 37.06	-2	910144..911379	+	411	104774035	hsdS1	Ldb1053	-	Type I restriction-modification system, specificity subunit
779	 38.13	-2	911418..912335	-	305	104774036	-	Ldb1054	-	integrase/recombinase
780	 38.06	-2	912377..913540	-	387	104774037	hsdS2	Ldb1055	-	Type I restriction-modification system, specificity subunit
781	 50.00	0	915072..915773	+	233	104774038	-	Ldb1059	-	hypothetical protein
782	 47.75	0	915837..917459	-	540	104774039	-	Ldb1060	-	peptide binding protein
783	 52.27	0	923046..924122	-	358	104774040	carA2a	Ldb1070	-	carbamoyl phosphate synthase small subunit
784	 49.96	0	924995..926281	-	428	104774041	-	Ldb1074	-	putative multidrug efflux protein
785	 47.92	0	926375..926806	+	143	104774042	-	Ldb1075	-	multidrug efflux pump transcriptional regulator
786	 45.43	-1	926740..927111	+	123	104774043	-	Ldb1076	-	hypothetical protein
787	 48.85	0	928450..929016	+	188	104774044	-	Ldb1079	-	putative integrase/recombinase
788	 46.56	0	930890..931078	+	62	104774045	-	Ldb1083	-	hypothetical protein
789	 48.76	0	930993..931355	+	120	104774046	-	Ldb1084	-	hypothetical protein
790	 40.00	-2	931394..931888	+	164	104774047	-	Ldb1085	-	hypothetical protein
791	 48.37	0	931901..932299	+	132	104774048	-	Ldb1086	-	putative phosphotyrosine protein phosphatase
792	 47.57	0	932531..932839	+	102	104774049	-	Ldb1087	-	hypothetical protein
793	 49.67	0	933001..933753	+	250	104774050	-	Ldb1088	-	ABC transporter, ATP-binding protein
794	 48.00	0	933776..935650	+	624	104774051	-	Ldb1089	-	ABC transporter, permease protein
795	 48.30	0	935713..935859	-	48	104774052	-	Ldb1090	-	hypothetical protein
796	 40.74	-1	936052..936105	+	17	104774053	-	Ldb1091	-	hypothetical protein
797	 42.59	-1	937083..938552	+	489	104774054	-	Ldb1095	-	putative fumarate reductase (flavoprotein)
798	 43.00	-1	939916..940122	+	68	104774055	-	Ldb1099	-	hypothetical protein
799	 41.46	-1	940240..940485	+	81	104774056	-	Ldb1100	-	hypothetical protein
800	 45.88	0	940744..941301	-	185	104774057	-	Ldb1101	-	putative acetyltransferase
801	 49.83	0	942754..943341	+	195	104774058	ppiB	Ldb1104	-	peptidyl-prolyl cis-trans isomerase (rotamase),cyclophilin type
802	 45.88	0	944135..944692	+	185	104774059	-	Ldb1106	-	putative acetyltransferase
803	 41.46	-1	944951..945196	-	81	104774060	-	Ldb1107	-	hypothetical protein
804	 43.00	-1	945314..945520	-	68	104774061	-	Ldb1108	-	hypothetical protein
805	 42.59	-1	946884..948353	-	489	104774062	-	Ldb1112	-	putative fumarate reductase (flavoprotein)
806	 40.74	-1	949331..949384	-	17	104774063	-	Ldb1116	-	hypothetical protein
807	 48.30	0	949577..949723	+	48	104774064	-	Ldb1117	-	hypothetical protein
808	 48.00	0	949786..951660	-	624	104774065	-	Ldb1118	-	ABC transporter, permease protein
809	 49.67	0	951683..952435	-	250	104774066	-	Ldb1119	-	ABC transporter, ATP-binding protein
810	 47.57	0	952597..952905	-	102	104774067	-	Ldb1120	-	hypothetical protein
811	 48.37	0	953137..953535	-	132	104774068	-	Ldb1121	-	putative phosphotyrosine protein phosphatase
812	 40.00	-2	953548..954042	-	164	104774069	-	Ldb1122	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.