IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
659	 46.46	0	747890..748087	-	65	104773916	-	Ldb0860	-	hypothetical protein
660	 54.06	0	748267..750702	+	811	104773917	-	Ldb0861	-	hypothetical protein
661	 51.74	0	750725..751126	+	133	104773918	-	Ldb0862	-	hypothetical protein
662	 50.70	0	751143..751355	+	70	104773919	-	Ldb0863	-	hypothetical protein
663	 41.67	-1	752943..753146	+	67	104773920	-	Ldb0865	-	hypothetical protein
664	 44.81	-1	753825..754007	+	60	104773921	-	Ldb0867	-	hypothetical protein
665	 44.47	-1	754688..757453	+	921	104773922	cas3	Ldb0868	-	CRISPR-associated helicase Cas3
666	 42.55	-1	757456..759180	+	574	104773923	-	Ldb0869	-	hypothetical protein
667	 46.31	0	759199..759807	+	202	104773924	-	Ldb0870	-	hypothetical protein
668	 47.35	0	759825..760901	+	358	104773925	-	Ldb0871	-	hypothetical protein
669	 48.86	0	760882..761583	+	233	104773926	-	Ldb0872	-	hypothetical protein
670	 48.56	0	761596..762219	+	207	104773927	-	Ldb0873	-	hypothetical protein
671	 46.27	0	762222..763172	+	316	104773928	-	Ldb0874	-	hypothetical protein
672	 42.61	-1	763169..764041	+	290	104773929	-	Ldb0875	-	hypothetical protein
673	 46.99	0	766821..767435	+	204	104773930	-	Ldb0876	-	hypothetical protein
674	 50.22	0	767432..768100	+	222	104773931	-	Ldb0877	-	two-component system, response regulator
675	 47.46	0	768103..769362	+	419	104773932	-	Ldb0878	-	two-component system, sensor histidine kinase
676	 55.50	0	769518..770618	+	366	104773933	-	Ldb0879	-	Acetyl-CoA acetyltransferase
677	 54.26	0	770663..771847	+	394	104773934	mvaA	Ldb0880	-	hydroxymethylglutaryl-CoA reductase
678	 54.30	0	771851..773014	+	387	104773935	mvaS	Ldb0881	-	hydroxymethylglutaryl-coenzyme A synthase
679	 58.43	+1	773179..774537	+	452	104773936	-	Ldb0882	-	hypothetical protein
680	 51.87	0	774595..775101	-	168	104773937	-	Ldb0883	-	hypothetical protein
681	 54.18	0	775182..776126	+	314	104773938	prmA	Ldb0884	-	ribosomal protein L11 methyltransferase
682	 54.82	0	776267..778528	+	753	104773939	relA	Ldb0885	-	GTP pyrophosphokinase
683	 53.65	0	778557..778994	+	145	104773940	dtd	Ldb0886	-	D-tyrosyl-tRNA deacylase
684	 46.49	0	779056..779169	+	37	104773941	-	Ldb0887	-	hypothetical protein
685	 54.08	0	779278..780564	+	428	104773942	hisS	Ldb0888	-	histidyl-tRNA synthetase
686	 55.34	0	780580..782424	+	614	104773943	aspS	Ldb0889	-	aspartyl-tRNA synthetase
687	 48.27	0	782498..783133	-	211	104773944	-	Ldb0890	-	hypothetical protein
688	 42.86	-1	783578..783661	-	27	104773945	-	Ldb0892	-	hypothetical protein
689	 46.43	0	783616..783699	-	27	104773946	-	Ldb0893	-	hypothetical protein
690	 51.97	0	786549..788324	+	591	104773947	-	Ldb0898	-	hypothetical protein
691	 49.81	0	788399..789472	+	357	104773948	-	Ldb0899	-	hypothetical protein
692	 59.27	+1	789756..790715	+	319	104773949	fabH	Ldb0900	-	3-oxoacyl-[acyl-carrier-protein] synthase III
693	 45.12	-1	790788..791033	+	81	104773950	acpP2	Ldb0901	-	Acyl carrier protein (ACP)
694	 55.13	0	791046..791990	+	314	104773951	fabD	Ldb0902	-	malonyl-CoA-[acyl-carrier-protein] transacylase
695	 54.77	0	791974..792696	+	240	104773952	fabG	Ldb0903	-	3-oxoacyl-[acyl-carrier-protein] reductase
696	 55.28	0	792706..793926	+	406	104773953	fabF	Ldb0904	-	3-oxoacyl-[acyl-carrier protein] synthase II
697	 52.17	0	793917..794399	+	160	104773954	accB	Ldb0905	-	Acetyl-CoA carboxylase, biotin carboxyl carrier protein
698	 54.73	0	794401..794844	+	147	104773955	fabZ1	Ldb0906	-	hydroxymyristoyl-[acyl carrier protein] dehydratase
699	 54.23	0	794837..796219	+	460	104773956	accC	Ldb0907	-	Acetyl-CoA carboxylase, biotin carboxylase subunit
700	 54.77	0	796206..797054	+	282	104773957	accD	Ldb0908	-	Acetyl-CoA carboxylase, beta subunit
701	 58.33	+1	797059..797814	+	251	104773958	accA	Ldb0909	-	Acetyl-CoA carboxylase, alpha subunit
702	 54.38	0	797824..798588	+	254	104773959	fabI	Ldb0910	-	enoyl-(acyl carrier protein) reductase
703	 54.35	0	798598..799263	+	221	104773960	birA	Ldb0911	-	biotin-[acetyl-CoA-carboxylase] ligase
704	 52.50	0	799511..800131	-	206	104773961	-	Ldb0913	-	hypothetical protein
705	 55.97	+1	800397..800639	+	80	104773962	-	Ldb0914	-	hypothetical protein
706	 55.76	0	800851..801015	+	54	104773963	-	Ldb0915	-	hypothetical protein
707	 41.67	-1	801034..801201	+	55	104773964	-	Ldb0916	-	hypothetical protein
708	 42.86	-1	801212..801295	-	27	104773965	-	Ldb0917	-	hypothetical protein
709	 45.24	-1	801250..801333	-	27	104773966	-	Ldb0918	-	hypothetical protein
710	 43.79	-1	801444..802667	+	407	104773967	-	Ldb0919	-	transposase
711	 50.00	0	802922..803053	+	43	104773968	-	Ldb0920	-	hypothetical protein
712	 49.86	0	803055..803762	+	235	104773969	-	Ldb0921	-	hypothetical protein
713	 51.26	0	811351..812226	+	291	104773970	-	Ldb0930	-	tRNA/rRNA methyltransferase
714	 44.44	-1	817772..818014	+	80	104773971	-	Ldb0952	-	hypothetical protein
715	 42.18	-1	818975..819268	-	97	104773972	-	Ldb0954	-	hypothetical protein
716	 44.44	-1	819466..819744	-	92	104773973	-	Ldb0955	-	hypothetical protein
717	 53.14	0	820306..821148	+	280	104773974	pstS	Ldb0956	-	phosphate ABC transporter phosphate-binding protein
718	 53.69	0	821168..822076	+	302	104773975	pstC	Ldb0957	-	phosphate ABC transporter permease
719	 51.94	0	822079..822954	+	291	104773976	pstA	Ldb0958	-	phosphate ABC transporter permease
720	 50.33	0	822954..823712	+	252	104773977	pstB	Ldb0959	-	phosphate ABC transporter ATP-binding protein
721	 46.79	0	823731..824369	+	212	104773978	phoU	Ldb0960	-	phosphate uptake regulator
722	 51.42	0	825128..826786	+	552	104773979	phoR	Ldb0963	-	phosphate regulon sensor histidine kinase
723	 53.42	0	828348..829004	-	218	104773980	-	Ldb0967	-	hypothetical protein
724	 50.44	0	829059..830087	+	342	104773981	-	Ldb0968	-	hypothetical protein
725	 52.72	0	830146..830697	-	183	104773982	-	Ldb0969	-	hypothetical protein
726	 53.78	0	832157..832924	-	255	104773983	-	Ldb0973	-	ABC transporter, ATP-binding protein
727	 52.63	0	832914..833732	-	272	104773984	-	Ldb0974	-	ABC transporter, ATP-binding protein
728	 55.34	0	833711..834487	-	258	104773985	-	Ldb0975	-	ABC transporter, permease protein
729	 52.99	0	834484..835119	-	211	104773986	-	Ldb0976	-	hypothetical protein
730	 45.37	-1	835511..835618	+	35	104773987	-	Ldb0977	-	hypothetical protein
731	 50.00	0	837249..837338	+	29	104773988	-	Ldb0980	-	hypothetical protein
732	 47.72	0	837356..838384	+	342	104773989	-	Ldb0981	-	putative signal transduction protein
733	 54.47	0	838391..838972	+	193	104773990	-	Ldb0982	-	hypothetical protein
734	 49.13	0	839090..839893	+	267	104773991	-	Ldb0983	-	HAD superfamily hydrolase
735	 51.49	0	843031..843669	-	212	104773992	-	Ldb0992	-	hypothetical protein
736	 55.28	0	843766..845697	+	643	104773993	parE	Ldb0993	-	DNA topoisomerase IV subunit B
737	 54.47	0	845712..848195	+	827	104773994	parC	Ldb0994	-	DNA topoisomerase IV subunit A
738	 50.00	0	848310..849245	+	311	104773995	ppaC	Ldb0995	-	putative manganese-dependent inorganic pyrophosphatase
739	 53.27	0	849451..850428	-	325	104773996	fni	Ldb0996	-	isopentenyl pyrophosphate isomerase
740	 52.35	0	850487..851569	-	360	104773997	mvaK	Ldb0997	-	phosphomevalonate kinase
741	 52.40	0	851646..852605	-	319	104773998	mvaD	Ldb0998	-	mevalonate diphosphate decarboxylase
742	 51.26	0	852661..853536	-	291	104773999	mvk	Ldb0999	-	mevalonate kinase
743	 53.90	0	853706..857245	+	1179	104774000	addB	Ldb1000	-	ATP-dependent deoxyribonuclease subunit B
744	 53.58	0	857272..860955	+	1227	104774001	addA	Ldb1001	-	ATP-dependent deoxyribonuclease subunit A
745	 53.88	0	860984..863776	+	930	104774002	dinG	Ldb1002	-	ATP-dependent DNA helicase DinG
746	 49.49	0	863769..864263	+	164	104774003	-	Ldb1003	-	hypothetical protein
747	 53.89	0	864325..865623	+	432	104774004	asnC	Ldb1004	-	asparaginyl-tRNA synthetase
748	 52.47	0	865715..866362	+	215	104774005	dnaD	Ldb1005	-	DNA replication protein DnaD
749	 55.56	0	866384..867013	+	209	104774006	nth	Ldb1006	-	endonuclease III
750	 46.77	0	867048..867851	+	267	104774007	-	Ldb1007	-	HAD superfamily hydrolase
751	 52.20	0	868797..869798	-	333	104774008	-	Ldb1010	-	D-isomer specific 2-hydroxyacid dehydrogenase
752	 51.74	0	869848..871776	-	642	104774009	-	Ldb1011	-	putative acylaminoacyl-peptidase
753	 53.73	0	871923..874256	-	777	104774010	pbp1A	Ldb1012	-	penicillin-binding protein 1A
754	 50.55	0	874222..874854	-	210	104774011	recU	Ldb1013	-	Holliday junction-specific endonuclease
755	 52.05	0	875015..875575	+	186	104774012	-	Ldb1014	-	hypothetical protein
756	 46.45	0	875651..876115	+	154	104774013	-	Ldb1015	-	hypothetical protein
757	 53.51	0	876632..877756	+	374	104774014	-	Ldb1016	-	putative DNA methylase
758	 44.82	-1	879155..879511	+	118	104774015	-	Ldb1019	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.