IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
625	 54.77	0	702945..703919	+	324	104773882	-	Ldb0812	-	hypothetical protein
626	 57.69	+1	703903..704871	+	322	104773883	-	Ldb0813	-	D-isomer specific 2-hydroxyacid dehydrogenase
627	 54.63	0	704946..706715	+	589	104773884	recQ	Ldb0814	-	ATP-dependent DNA helicase RecQ
628	 55.48	0	706772..707710	-	312	104773885	-	Ldb0815	-	inosine-uridine preferring nucleoside hydrolase
629	 52.08	0	707984..709786	+	600	104773886	uvrC	Ldb0816	-	excinuclease ABC subunit C
630	 56.69	+1	709855..711177	+	440	104773887	obgE	Ldb0817	-	GTPase ObgE
631	 54.62	0	713210..714139	+	309	104773888	-	Ldb0820	-	beta-lactamase family hydrolase
632	 56.10	+1	714150..714944	+	264	104773889	-	Ldb0821	-	Short-chain dehydrogenase/reductase
633	 50.00	0	715059..715250	+	63	104773890	rpmF	Ldb0822	-	50S ribosomal protein L32
634	 53.90	0	715319..716884	+	521	104773891	-	Ldb0823	-	5'-nucleotidase
635	 53.73	0	716970..718886	+	638	104773892	-	Ldb0824	-	hypothetical protein
636	 56.21	+1	719633..720196	+	187	104773893	-	Ldb0827	-	hypothetical protein
637	 42.86	-1	721767..721850	-	27	104773894	-	Ldb0833	-	hypothetical protein
638	 45.24	-1	721805..721888	-	27	104773895	-	Ldb0834	-	hypothetical protein
639	 43.79	-1	721999..723222	+	407	104773896	-	Ldb0835	-	transposase
640	 46.27	0	723441..723641	-	66	104773897	-	Ldb0836	-	hypothetical protein
641	 55.34	0	723776..727255	+	1159	104773898	dnaE	Ldb0837	-	DNA polymerase III, alpha subunit (DnaE)
642	 53.33	0	727463..728422	+	319	104773899	pfk1	Ldb0838	-	6-phosphofructokinase
643	 48.36	0	728462..730231	+	589	104773900	pyk	Ldb0839	-	pyruvate kinase
644	 52.90	0	731787..732665	+	292	104773901	-	Ldb0842	-	hypothetical protein
645	 55.96	+1	732658..733554	+	298	104773902	xerD	Ldb0843	-	site-specific recombinase
646	 49.44	0	733565..733918	+	117	104773903	-	Ldb0844	-	hypothetical protein
647	 51.97	0	733908..734642	+	244	104773904	-	Ldb0845	-	hypothetical protein
648	 54.39	0	734632..735234	+	200	104773905	scpB	Ldb0846	-	putative segregation and condensation protein B
649	 52.50	0	735234..735953	+	239	104773906	rluB	Ldb0847	-	pseudouridylate synthase
650	 52.20	0	736178..736882	+	234	104773907	-	Ldb0848	-	hypothetical protein
651	 56.82	+1	736992..737387	+	131	104773908	-	Ldb0849	-	hypothetical protein
652	 51.77	0	737441..738118	+	225	104773909	cmk	Ldb0850	-	cytidylate kinase
653	 46.19	0	738206..739411	+	401	104773910	rpsA	Ldb0851	-	30S ribosomal protein S1
654	 56.80	+1	739488..740795	+	435	104773911	engA	Ldb0852	-	GTP-binding protein EngA
655	 46.74	0	740999..741274	+	91	104773912	hlbA	Ldb0853	-	histone-like DNA-binding protein
656	 54.86	0	741390..742643	+	417	104773913	-	Ldb0854	-	hypothetical protein
657	 52.80	0	742771..745626	+	951	104773914	-	Ldb0855	-	hypothetical protein
658	 51.18	0	745704..746639	-	311	104773915	-	Ldb0856	-	LysR family transcriptional regulator
659	 46.46	0	747890..748087	-	65	104773916	-	Ldb0860	-	hypothetical protein
660	 54.06	0	748267..750702	+	811	104773917	-	Ldb0861	-	hypothetical protein
661	 51.74	0	750725..751126	+	133	104773918	-	Ldb0862	-	hypothetical protein
662	 50.70	0	751143..751355	+	70	104773919	-	Ldb0863	-	hypothetical protein
663	 41.67	-1	752943..753146	+	67	104773920	-	Ldb0865	-	hypothetical protein
664	 44.81	-1	753825..754007	+	60	104773921	-	Ldb0867	-	hypothetical protein
665	 44.47	-1	754688..757453	+	921	104773922	cas3	Ldb0868	-	CRISPR-associated helicase Cas3
666	 42.55	-1	757456..759180	+	574	104773923	-	Ldb0869	-	hypothetical protein
667	 46.31	0	759199..759807	+	202	104773924	-	Ldb0870	-	hypothetical protein
668	 47.35	0	759825..760901	+	358	104773925	-	Ldb0871	-	hypothetical protein
669	 48.86	0	760882..761583	+	233	104773926	-	Ldb0872	-	hypothetical protein
670	 48.56	0	761596..762219	+	207	104773927	-	Ldb0873	-	hypothetical protein
671	 46.27	0	762222..763172	+	316	104773928	-	Ldb0874	-	hypothetical protein
672	 42.61	-1	763169..764041	+	290	104773929	-	Ldb0875	-	hypothetical protein
673	 46.99	0	766821..767435	+	204	104773930	-	Ldb0876	-	hypothetical protein
674	 50.22	0	767432..768100	+	222	104773931	-	Ldb0877	-	two-component system, response regulator
675	 47.46	0	768103..769362	+	419	104773932	-	Ldb0878	-	two-component system, sensor histidine kinase
676	 55.50	0	769518..770618	+	366	104773933	-	Ldb0879	-	Acetyl-CoA acetyltransferase
677	 54.26	0	770663..771847	+	394	104773934	mvaA	Ldb0880	-	hydroxymethylglutaryl-CoA reductase
678	 54.30	0	771851..773014	+	387	104773935	mvaS	Ldb0881	-	hydroxymethylglutaryl-coenzyme A synthase
679	 58.43	+1	773179..774537	+	452	104773936	-	Ldb0882	-	hypothetical protein
680	 51.87	0	774595..775101	-	168	104773937	-	Ldb0883	-	hypothetical protein
681	 54.18	0	775182..776126	+	314	104773938	prmA	Ldb0884	-	ribosomal protein L11 methyltransferase
682	 54.82	0	776267..778528	+	753	104773939	relA	Ldb0885	-	GTP pyrophosphokinase
683	 53.65	0	778557..778994	+	145	104773940	dtd	Ldb0886	-	D-tyrosyl-tRNA deacylase
684	 46.49	0	779056..779169	+	37	104773941	-	Ldb0887	-	hypothetical protein
685	 54.08	0	779278..780564	+	428	104773942	hisS	Ldb0888	-	histidyl-tRNA synthetase
686	 55.34	0	780580..782424	+	614	104773943	aspS	Ldb0889	-	aspartyl-tRNA synthetase
687	 48.27	0	782498..783133	-	211	104773944	-	Ldb0890	-	hypothetical protein
688	 42.86	-1	783578..783661	-	27	104773945	-	Ldb0892	-	hypothetical protein
689	 46.43	0	783616..783699	-	27	104773946	-	Ldb0893	-	hypothetical protein
690	 51.97	0	786549..788324	+	591	104773947	-	Ldb0898	-	hypothetical protein
691	 49.81	0	788399..789472	+	357	104773948	-	Ldb0899	-	hypothetical protein
692	 59.27	+1	789756..790715	+	319	104773949	fabH	Ldb0900	-	3-oxoacyl-[acyl-carrier-protein] synthase III
693	 45.12	-1	790788..791033	+	81	104773950	acpP2	Ldb0901	-	Acyl carrier protein (ACP)
694	 55.13	0	791046..791990	+	314	104773951	fabD	Ldb0902	-	malonyl-CoA-[acyl-carrier-protein] transacylase
695	 54.77	0	791974..792696	+	240	104773952	fabG	Ldb0903	-	3-oxoacyl-[acyl-carrier-protein] reductase
696	 55.28	0	792706..793926	+	406	104773953	fabF	Ldb0904	-	3-oxoacyl-[acyl-carrier protein] synthase II
697	 52.17	0	793917..794399	+	160	104773954	accB	Ldb0905	-	Acetyl-CoA carboxylase, biotin carboxyl carrier protein
698	 54.73	0	794401..794844	+	147	104773955	fabZ1	Ldb0906	-	hydroxymyristoyl-[acyl carrier protein] dehydratase
699	 54.23	0	794837..796219	+	460	104773956	accC	Ldb0907	-	Acetyl-CoA carboxylase, biotin carboxylase subunit
700	 54.77	0	796206..797054	+	282	104773957	accD	Ldb0908	-	Acetyl-CoA carboxylase, beta subunit
701	 58.33	+1	797059..797814	+	251	104773958	accA	Ldb0909	-	Acetyl-CoA carboxylase, alpha subunit
702	 54.38	0	797824..798588	+	254	104773959	fabI	Ldb0910	-	enoyl-(acyl carrier protein) reductase
703	 54.35	0	798598..799263	+	221	104773960	birA	Ldb0911	-	biotin-[acetyl-CoA-carboxylase] ligase
704	 52.50	0	799511..800131	-	206	104773961	-	Ldb0913	-	hypothetical protein
705	 55.97	+1	800397..800639	+	80	104773962	-	Ldb0914	-	hypothetical protein
706	 55.76	0	800851..801015	+	54	104773963	-	Ldb0915	-	hypothetical protein
707	 41.67	-1	801034..801201	+	55	104773964	-	Ldb0916	-	hypothetical protein
708	 42.86	-1	801212..801295	-	27	104773965	-	Ldb0917	-	hypothetical protein
709	 45.24	-1	801250..801333	-	27	104773966	-	Ldb0918	-	hypothetical protein
710	 43.79	-1	801444..802667	+	407	104773967	-	Ldb0919	-	transposase
711	 50.00	0	802922..803053	+	43	104773968	-	Ldb0920	-	hypothetical protein
712	 49.86	0	803055..803762	+	235	104773969	-	Ldb0921	-	hypothetical protein
713	 51.26	0	811351..812226	+	291	104773970	-	Ldb0930	-	tRNA/rRNA methyltransferase
714	 44.44	-1	817772..818014	+	80	104773971	-	Ldb0952	-	hypothetical protein
715	 42.18	-1	818975..819268	-	97	104773972	-	Ldb0954	-	hypothetical protein
716	 44.44	-1	819466..819744	-	92	104773973	-	Ldb0955	-	hypothetical protein
717	 53.14	0	820306..821148	+	280	104773974	pstS	Ldb0956	-	phosphate ABC transporter phosphate-binding protein
718	 53.69	0	821168..822076	+	302	104773975	pstC	Ldb0957	-	phosphate ABC transporter permease
719	 51.94	0	822079..822954	+	291	104773976	pstA	Ldb0958	-	phosphate ABC transporter permease
720	 50.33	0	822954..823712	+	252	104773977	pstB	Ldb0959	-	phosphate ABC transporter ATP-binding protein
721	 46.79	0	823731..824369	+	212	104773978	phoU	Ldb0960	-	phosphate uptake regulator
722	 51.42	0	825128..826786	+	552	104773979	phoR	Ldb0963	-	phosphate regulon sensor histidine kinase
723	 53.42	0	828348..829004	-	218	104773980	-	Ldb0967	-	hypothetical protein
724	 50.44	0	829059..830087	+	342	104773981	-	Ldb0968	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.