IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
581	 48.25	0	644211..644552	+	113	104773838	-	Ldb0754	-	hypothetical protein
582	 54.96	0	644557..645684	+	375	104773839	trmU	Ldb0755	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
583	 51.82	0	645784..646443	+	219	104773840	-	Ldb0756	-	putative fructose-2,6-bisphosphatase
584	 53.82	0	646443..647096	+	217	104773841	-	Ldb0757	-	hypothetical protein
585	 55.33	0	647110..649500	+	796	104773842	recD	Ldb0758	-	exodeoxyribonuclease V alpha chain
586	 54.74	0	649666..651015	+	449	104773843	-	Ldb0759	-	putative pyridine nucleotide-disulphide oxidoreductase
587	 55.48	0	651055..652734	-	559	104773844	-	Ldb0760	-	metallo-beta-lactamase family hydrolase
588	 44.87	-1	652724..652957	-	77	104773845	-	Ldb0761	-	hypothetical protein
589	 54.59	0	653136..653690	-	184	104773846	def	Ldb0762	-	peptide deformylase
590	 52.81	0	653936..655783	+	615	104773847	typA	Ldb0763	-	GTP-binding protein TypA
591	 51.62	0	655882..657084	+	400	104773848	ftsW	Ldb0764	-	cell division protein FtsW
592	 46.78	0	657074..657415	+	113	104773849	-	Ldb0765	-	hypothetical protein
593	 54.35	0	657412..657963	+	183	104773850	-	Ldb0766	-	putative methylase
594	 55.89	0	657967..658458	+	163	104773851	coaD	Ldb0767	-	phosphopantetheine adenylyltransferase
595	 54.37	0	658448..659488	+	346	104773852	-	Ldb0768	-	hypothetical protein
596	 53.68	0	659624..660370	+	248	104773853	comEA	Ldb0769	-	competence protein ComEA
597	 53.18	0	660396..662582	+	728	104773854	comEC	Ldb0770	-	competence protein ComEC
598	 55.15	0	662613..663602	+	329	104773855	holA	Ldb0771	-	DNA polymerase III, delta subunit
599	 46.43	0	663695..663946	-	83	104773856	rpsT	Ldb0772	-	30S ribosomal protein S20
600	 44.81	-1	664150..664419	+	89	104773857	rpsO	Ldb0773	-	30S ribosomal protein S15
601	 54.25	0	664621..666465	+	614	104773858	-	Ldb0774	-	metallo-beta-lactamase family hydrolase
602	 52.29	0	666452..667279	+	275	104773859	-	Ldb0775	-	hypothetical protein
603	 47.02	0	667468..668658	+	396	104773860	tuf	Ldb0776	-	elongation factor Tu
604	 47.42	0	668842..670161	+	439	104773861	tig	Ldb0777	-	trigger factor
605	 51.20	0	670313..671566	+	417	104773862	clpX	Ldb0778	-	ATP-dependent protease ATP-binding subunit
606	 51.74	0	671556..672158	+	200	104773863	-	Ldb0779	-	GTPase EngB
607	 48.94	0	673935..674075	-	46	104773864	-	Ldb0782	-	hypothetical protein
608	 55.51	0	674213..674875	+	220	104773865	-	Ldb0783	-	hypothetical protein
609	 53.39	0	675148..676797	+	549	104773866	-	Ldb0784	-	peptide binding protein
610	 57.14	+1	676857..677234	-	125	104773867	-	Ldb0785	-	hypothetical protein
611	 52.25	0	678301..679257	+	318	104773868	thyA	Ldb0787	-	thymidylate synthase
612	 54.40	0	679271..679759	+	162	104773869	folA	Ldb0788	-	dihydrofolate reductase
613	 52.68	0	682647..683468	+	273	104773870	-	Ldb0792	-	ABC transporter, substrate binding protein
614	 53.79	0	683505..684560	+	351	104773871	-	Ldb0793	-	ABC transporter, ATP-binding protein
615	 54.62	0	684557..685270	+	237	104773872	-	Ldb0794	-	ABC transporter, permease protein
616	 53.65	0	685393..686790	+	465	104773873	-	Ldb0795	-	putative fumarate reductase (flavoprotein)
617	 43.71	-1	694455..695678	-	407	104773874	-	Ldb0803	-	transposase
618	 48.81	0	695789..695872	+	27	104773875	-	Ldb0804	-	hypothetical protein
619	 42.86	-1	695827..695910	+	27	104773876	-	Ldb0805	-	hypothetical protein
620	 54.07	0	696673..697926	-	417	104773877	-	Ldb0807	-	aminotransferase
621	 54.97	0	698066..698980	+	304	104773878	-	Ldb0808	-	LysR family transcriptional regulator
622	 51.83	0	699215..700912	+	565	104773879	argS	Ldb0809	-	arginyl-tRNA synthetase
623	 50.00	0	701132..701605	+	157	104773880	argR	Ldb0810	-	arginine repressor
624	 58.25	+1	701617..702816	+	399	104773881	dfp	Ldb0811	-	phosphopantothenoylcysteine synthetase/decarboxylase
625	 54.77	0	702945..703919	+	324	104773882	-	Ldb0812	-	hypothetical protein
626	 57.69	+1	703903..704871	+	322	104773883	-	Ldb0813	-	D-isomer specific 2-hydroxyacid dehydrogenase
627	 54.63	0	704946..706715	+	589	104773884	recQ	Ldb0814	-	ATP-dependent DNA helicase RecQ
628	 55.48	0	706772..707710	-	312	104773885	-	Ldb0815	-	inosine-uridine preferring nucleoside hydrolase
629	 52.08	0	707984..709786	+	600	104773886	uvrC	Ldb0816	-	excinuclease ABC subunit C
630	 56.69	+1	709855..711177	+	440	104773887	obgE	Ldb0817	-	GTPase ObgE
631	 54.62	0	713210..714139	+	309	104773888	-	Ldb0820	-	beta-lactamase family hydrolase
632	 56.10	+1	714150..714944	+	264	104773889	-	Ldb0821	-	Short-chain dehydrogenase/reductase
633	 50.00	0	715059..715250	+	63	104773890	rpmF	Ldb0822	-	50S ribosomal protein L32
634	 53.90	0	715319..716884	+	521	104773891	-	Ldb0823	-	5'-nucleotidase
635	 53.73	0	716970..718886	+	638	104773892	-	Ldb0824	-	hypothetical protein
636	 56.21	+1	719633..720196	+	187	104773893	-	Ldb0827	-	hypothetical protein
637	 42.86	-1	721767..721850	-	27	104773894	-	Ldb0833	-	hypothetical protein
638	 45.24	-1	721805..721888	-	27	104773895	-	Ldb0834	-	hypothetical protein
639	 43.79	-1	721999..723222	+	407	104773896	-	Ldb0835	-	transposase
640	 46.27	0	723441..723641	-	66	104773897	-	Ldb0836	-	hypothetical protein
641	 55.34	0	723776..727255	+	1159	104773898	dnaE	Ldb0837	-	DNA polymerase III, alpha subunit (DnaE)
642	 53.33	0	727463..728422	+	319	104773899	pfk1	Ldb0838	-	6-phosphofructokinase
643	 48.36	0	728462..730231	+	589	104773900	pyk	Ldb0839	-	pyruvate kinase
644	 52.90	0	731787..732665	+	292	104773901	-	Ldb0842	-	hypothetical protein
645	 55.96	+1	732658..733554	+	298	104773902	xerD	Ldb0843	-	site-specific recombinase
646	 49.44	0	733565..733918	+	117	104773903	-	Ldb0844	-	hypothetical protein
647	 51.97	0	733908..734642	+	244	104773904	-	Ldb0845	-	hypothetical protein
648	 54.39	0	734632..735234	+	200	104773905	scpB	Ldb0846	-	putative segregation and condensation protein B
649	 52.50	0	735234..735953	+	239	104773906	rluB	Ldb0847	-	pseudouridylate synthase
650	 52.20	0	736178..736882	+	234	104773907	-	Ldb0848	-	hypothetical protein
651	 56.82	+1	736992..737387	+	131	104773908	-	Ldb0849	-	hypothetical protein
652	 51.77	0	737441..738118	+	225	104773909	cmk	Ldb0850	-	cytidylate kinase
653	 46.19	0	738206..739411	+	401	104773910	rpsA	Ldb0851	-	30S ribosomal protein S1
654	 56.80	+1	739488..740795	+	435	104773911	engA	Ldb0852	-	GTP-binding protein EngA
655	 46.74	0	740999..741274	+	91	104773912	hlbA	Ldb0853	-	histone-like DNA-binding protein
656	 54.86	0	741390..742643	+	417	104773913	-	Ldb0854	-	hypothetical protein
657	 52.80	0	742771..745626	+	951	104773914	-	Ldb0855	-	hypothetical protein
658	 51.18	0	745704..746639	-	311	104773915	-	Ldb0856	-	LysR family transcriptional regulator
659	 46.46	0	747890..748087	-	65	104773916	-	Ldb0860	-	hypothetical protein
660	 54.06	0	748267..750702	+	811	104773917	-	Ldb0861	-	hypothetical protein
661	 51.74	0	750725..751126	+	133	104773918	-	Ldb0862	-	hypothetical protein
662	 50.70	0	751143..751355	+	70	104773919	-	Ldb0863	-	hypothetical protein
663	 41.67	-1	752943..753146	+	67	104773920	-	Ldb0865	-	hypothetical protein
664	 44.81	-1	753825..754007	+	60	104773921	-	Ldb0867	-	hypothetical protein
665	 44.47	-1	754688..757453	+	921	104773922	cas3	Ldb0868	-	CRISPR-associated helicase Cas3
666	 42.55	-1	757456..759180	+	574	104773923	-	Ldb0869	-	hypothetical protein
667	 46.31	0	759199..759807	+	202	104773924	-	Ldb0870	-	hypothetical protein
668	 47.35	0	759825..760901	+	358	104773925	-	Ldb0871	-	hypothetical protein
669	 48.86	0	760882..761583	+	233	104773926	-	Ldb0872	-	hypothetical protein
670	 48.56	0	761596..762219	+	207	104773927	-	Ldb0873	-	hypothetical protein
671	 46.27	0	762222..763172	+	316	104773928	-	Ldb0874	-	hypothetical protein
672	 42.61	-1	763169..764041	+	290	104773929	-	Ldb0875	-	hypothetical protein
673	 46.99	0	766821..767435	+	204	104773930	-	Ldb0876	-	hypothetical protein
674	 50.22	0	767432..768100	+	222	104773931	-	Ldb0877	-	two-component system, response regulator
675	 47.46	0	768103..769362	+	419	104773932	-	Ldb0878	-	two-component system, sensor histidine kinase
676	 55.50	0	769518..770618	+	366	104773933	-	Ldb0879	-	Acetyl-CoA acetyltransferase
677	 54.26	0	770663..771847	+	394	104773934	mvaA	Ldb0880	-	hydroxymethylglutaryl-CoA reductase
678	 54.30	0	771851..773014	+	387	104773935	mvaS	Ldb0881	-	hydroxymethylglutaryl-coenzyme A synthase
679	 58.43	+1	773179..774537	+	452	104773936	-	Ldb0882	-	hypothetical protein
680	 51.87	0	774595..775101	-	168	104773937	-	Ldb0883	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.