IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 52.95	0	578901..579899	+	332	104773773	-	Ldb0685	-	hypothetical protein
517	 50.76	0	579935..581122	+	395	104773774	ack	Ldb0686	-	acetate kinase
518	 46.79	0	581845..582000	+	51	104773775	-	Ldb0687	-	hypothetical protein
519	 51.79	0	582180..582905	+	241	104773776	-	Ldb0688	-	two-component system, response regulator
520	 52.23	0	582902..584467	+	521	104773777	-	Ldb0689	-	two-component system, sensor histidine kinase
521	 50.79	0	584514..586736	-	740	104773778	-	Ldb0690	-	putative phosphoglycerol transferase
522	 48.80	0	586885..587511	+	208	104773779	-	Ldb0691	-	hypothetical protein
523	 51.08	0	587588..588928	+	446	104773780	pgi	Ldb0692	-	glucose-6-phosphate isomerase
524	 53.23	0	590964..591968	+	334	104773781	-	Ldb0697	-	putative penicillin binding protein
525	 50.00	0	591991..592242	+	83	104773782	-	Ldb0698	-	hypothetical protein
526	 53.76	0	592304..593659	-	451	104773783	murE2	Ldb0699	-	putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
527	 54.73	0	593800..594402	+	200	104773784	tdk	Ldb0700	-	thymidine kinase
528	 52.21	0	594426..595511	+	361	104773785	prfA	Ldb0701	-	peptide chain release factor 1
529	 54.38	0	595525..596346	+	273	104773786	hemK	Ldb0702	-	methylase of polypeptide chain release factors
530	 54.02	0	596346..597341	+	331	104773787	-	Ldb0703	-	Sua5 family translation factor
531	 53.33	0	597441..598070	+	209	104773788	upp	Ldb0704	-	Uracil phosphoribosyltransferase
532	 44.58	-1	598180..598899	+	239	104773789	atpB	Ldb0705	-	F0F1 ATP synthase subunit A
533	 44.89	-1	598918..599142	+	74	104773790	atpE	Ldb0706	-	F0F1 ATP synthase subunit C
534	 46.94	0	599196..599702	+	168	104773791	atpF	Ldb0707	-	F0F1 ATP synthase subunit B
535	 45.86	0	599702..600244	+	180	104773792	atpH	Ldb0708	-	F0F1 ATP synthase subunit delta
536	 52.38	0	600267..601778	+	503	104773793	atpA	Ldb0709	-	F0F1 ATP synthase subunit alpha
537	 49.33	0	601789..602751	+	320	104773794	atpG	Ldb0710	-	F0F1 ATP synthase subunit gamma
538	 50.83	0	602771..604210	+	479	104773795	atpD	Ldb0711	-	F0F1 ATP synthase subunit beta
539	 53.51	0	604222..604662	+	146	104773796	atpC	Ldb0712	-	F0F1 ATP synthase subunit epsilon
540	 41.46	-1	604696..604941	+	81	104773797	-	Ldb0713	-	hypothetical protein
541	 53.64	0	605027..606016	+	329	104773798	mreB2	Ldb0714	-	cell-shape-determining protein MreB
542	 48.96	0	606019..606306	+	95	104773799	-	Ldb0715	-	hypothetical protein
543	 50.00	0	606319..606546	+	75	104773800	-	Ldb0716	-	hypothetical protein
544	 52.73	0	606571..607761	+	396	104773801	rodA	Ldb0717	-	rod-shape determining protein
545	 52.60	0	607833..608294	-	153	104773802	usp1	Ldb0718	-	hypothetical protein
546	 50.18	0	608352..608636	-	94	104773803	-	Ldb0719	-	hypothetical protein
547	 58.85	+1	608987..610291	-	434	104773804	-	Ldb0720	-	recombination factor protein RarA
548	 53.33	0	610288..610752	-	154	104773805	-	Ldb0721	-	hypothetical protein
549	 46.90	0	610877..611488	-	203	104773806	rpsD	Ldb0722	-	30S ribosomal protein S4
550	 52.59	0	611784..613502	+	572	104773807	ezrA	Ldb0723	-	septation ring formation regulator EzrA
551	 54.06	0	613588..614745	+	385	104773808	-	Ldb0724	-	putative cysteine sulfinate desulfinase/cysteine desulfurase
552	 53.83	0	614766..615965	+	399	104773809	thiI	Ldb0725	-	thiamine biosynthesis protein ThiI
553	 53.17	0	615965..616690	+	241	104773810	rsuA	Ldb0726	-	pseudouridylate synthase
554	 55.38	0	616951..619590	+	879	104773811	valS	Ldb0727	-	valyl-tRNA synthetase
555	 52.05	0	619595..620860	+	421	104773812	folC1	Ldb0728	-	folylpolyglutamate synthase
556	 53.89	0	620878..621558	+	226	104773813	-	Ldb0729	-	putative phosphatase
557	 54.63	0	621607..622221	+	204	104773814	radC	Ldb0730	-	DNA repair protein RadC
558	 50.75	0	622312..623316	+	334	104773815	mreB1	Ldb0731	-	cell-shape-determining protein MreB
559	 56.48	+1	623394..624218	+	274	104773816	mreC	Ldb0732	-	cell shape determining protein MreC
560	 56.11	+1	624218..624757	+	179	104773817	-	Ldb0733	-	hypothetical protein
561	 47.58	0	625054..625383	+	109	104773818	-	Ldb0734	-	hypothetical protein
562	 51.62	0	625516..625947	+	143	104773819	mraZ	Ldb0735	-	cell division protein MraZ
563	 53.23	0	625950..626894	+	314	104773820	mraW	Ldb0736	-	S-adenosyl-methyltransferase MraW
564	 48.46	0	626906..627262	+	118	104773821	ftsL	Ldb0737	-	cell division protein FtsL
565	 52.89	0	627262..629424	+	720	104773822	ftsI	Ldb0738	-	cell division protein FtsI
566	 54.06	0	629432..630391	+	319	104773823	mraY	Ldb0739	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
567	 52.86	0	630398..631780	+	460	104773824	murD	Ldb0740	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
568	 52.92	0	631782..632894	+	370	104773825	murG	Ldb0741	-	N-acetylglucosaminyl transferase
569	 49.76	0	632918..633763	+	281	104773826	ftsQ	Ldb0742	-	cell division protein FtsQ
570	 51.92	0	633822..635204	+	460	104773827	ftsA	Ldb0743	-	cell division protein FtsA
571	 54.30	0	635220..636578	+	452	104773828	ftsZ	Ldb0744	-	cell division protein FtsZ
572	 51.56	0	636593..637009	+	138	104773829	-	Ldb0745	-	hypothetical protein
573	 49.50	0	637039..637341	+	100	104773830	-	Ldb0746	-	hypothetical protein
574	 53.38	0	637341..638138	+	265	104773831	-	Ldb0747	-	putative RNA binding protein
575	 54.51	0	638488..641283	+	931	104773832	ileS	Ldb0748	-	isoleucyl-tRNA synthetase
576	 45.71	0	641283..641492	+	69	104773833	cspB	Ldb0749	-	cold shock protein B
577	 49.10	0	641508..642065	+	185	104773834	-	Ldb0750	-	ADP-ribose pyrophosphatase
578	 46.38	0	642069..642275	+	68	104773835	-	Ldb0751	-	hypothetical protein
579	 51.50	0	642295..642993	+	232	104773836	pfs	Ldb0752	-	nucleoside phosphorylase
580	 55.24	0	642993..644156	+	387	104773837	-	Ldb0753	-	putative cysteine sulfinate desulfinase/cysteine desulfurase
581	 48.25	0	644211..644552	+	113	104773838	-	Ldb0754	-	hypothetical protein
582	 54.96	0	644557..645684	+	375	104773839	trmU	Ldb0755	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
583	 51.82	0	645784..646443	+	219	104773840	-	Ldb0756	-	putative fructose-2,6-bisphosphatase
584	 53.82	0	646443..647096	+	217	104773841	-	Ldb0757	-	hypothetical protein
585	 55.33	0	647110..649500	+	796	104773842	recD	Ldb0758	-	exodeoxyribonuclease V alpha chain
586	 54.74	0	649666..651015	+	449	104773843	-	Ldb0759	-	putative pyridine nucleotide-disulphide oxidoreductase
587	 55.48	0	651055..652734	-	559	104773844	-	Ldb0760	-	metallo-beta-lactamase family hydrolase
588	 44.87	-1	652724..652957	-	77	104773845	-	Ldb0761	-	hypothetical protein
589	 54.59	0	653136..653690	-	184	104773846	def	Ldb0762	-	peptide deformylase
590	 52.81	0	653936..655783	+	615	104773847	typA	Ldb0763	-	GTP-binding protein TypA
591	 51.62	0	655882..657084	+	400	104773848	ftsW	Ldb0764	-	cell division protein FtsW
592	 46.78	0	657074..657415	+	113	104773849	-	Ldb0765	-	hypothetical protein
593	 54.35	0	657412..657963	+	183	104773850	-	Ldb0766	-	putative methylase
594	 55.89	0	657967..658458	+	163	104773851	coaD	Ldb0767	-	phosphopantetheine adenylyltransferase
595	 54.37	0	658448..659488	+	346	104773852	-	Ldb0768	-	hypothetical protein
596	 53.68	0	659624..660370	+	248	104773853	comEA	Ldb0769	-	competence protein ComEA
597	 53.18	0	660396..662582	+	728	104773854	comEC	Ldb0770	-	competence protein ComEC
598	 55.15	0	662613..663602	+	329	104773855	holA	Ldb0771	-	DNA polymerase III, delta subunit
599	 46.43	0	663695..663946	-	83	104773856	rpsT	Ldb0772	-	30S ribosomal protein S20
600	 44.81	-1	664150..664419	+	89	104773857	rpsO	Ldb0773	-	30S ribosomal protein S15
601	 54.25	0	664621..666465	+	614	104773858	-	Ldb0774	-	metallo-beta-lactamase family hydrolase
602	 52.29	0	666452..667279	+	275	104773859	-	Ldb0775	-	hypothetical protein
603	 47.02	0	667468..668658	+	396	104773860	tuf	Ldb0776	-	elongation factor Tu
604	 47.42	0	668842..670161	+	439	104773861	tig	Ldb0777	-	trigger factor
605	 51.20	0	670313..671566	+	417	104773862	clpX	Ldb0778	-	ATP-dependent protease ATP-binding subunit
606	 51.74	0	671556..672158	+	200	104773863	-	Ldb0779	-	GTPase EngB
607	 48.94	0	673935..674075	-	46	104773864	-	Ldb0782	-	hypothetical protein
608	 55.51	0	674213..674875	+	220	104773865	-	Ldb0783	-	hypothetical protein
609	 53.39	0	675148..676797	+	549	104773866	-	Ldb0784	-	peptide binding protein
610	 57.14	+1	676857..677234	-	125	104773867	-	Ldb0785	-	hypothetical protein
611	 52.25	0	678301..679257	+	318	104773868	thyA	Ldb0787	-	thymidylate synthase
612	 54.40	0	679271..679759	+	162	104773869	folA	Ldb0788	-	dihydrofolate reductase
613	 52.68	0	682647..683468	+	273	104773870	-	Ldb0792	-	ABC transporter, substrate binding protein
614	 53.79	0	683505..684560	+	351	104773871	-	Ldb0793	-	ABC transporter, ATP-binding protein
615	 54.62	0	684557..685270	+	237	104773872	-	Ldb0794	-	ABC transporter, permease protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.