IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
423	 54.70	0	478682..479149	-	155	104773680	-	Ldb0564	-	hypothetical protein
424	 53.96	0	479250..480107	+	285	104773681	-	Ldb0565	-	hypothetical protein
425	 56.23	+1	480114..481685	+	523	104773682	prfC	Ldb0566	-	peptide chain release factor 3
426	 43.92	-1	481787..481975	-	62	104773683	-	Ldb0567	-	hypothetical protein
427	 59.84	+1	481997..482245	-	82	104773684	-	Ldb0568	-	hypothetical protein
428	 45.88	0	483955..484233	-	92	104773685	-	Ldb0573	-	hypothetical protein
429	 54.74	0	484349..486544	-	731	104773686	clpE	Ldb0574	-	ATP-dependent Clp protease, ATP-binding subunit ClpE
430	 47.76	0	486713..486913	+	66	104773687	-	Ldb0575	-	hypothetical protein
431	 43.07	-1	487021..487287	+	88	104773688	ptsH	Ldb0576	-	phosphocarrier protein HPr
432	 51.22	0	487287..489014	+	575	104773689	ptsI	Ldb0577	-	phosphoenolpyruvate-protein phosphotransferase (enzyme I of the phosphotransferase system)
433	 46.17	0	489193..489597	+	134	104773690	spx	Ldb0578	-	hypothetical protein
434	 55.73	0	489701..490450	+	249	104773691	mecA	Ldb0579	-	adaptor protein
435	 47.91	0	491425..492069	-	214	104773692	-	Ldb0582	-	hypothetical protein
436	 54.06	0	492150..492752	-	200	104773693	-	Ldb0583	-	hypothetical protein
437	 52.11	0	492850..493488	+	212	104773694	-	Ldb0584	-	hypothetical protein
438	 56.64	+1	493485..494282	+	265	104773695	ppnK	Ldb0585	-	inorganic polyphosphate/ATP-NAD kinase
439	 57.21	+1	494282..495190	+	302	104773696	-	Ldb0586	-	pseudouridylate synthase
440	 52.29	0	495536..496363	-	275	104773697	upk	Ldb0587	-	undecaprenyl pyrophosphate phosphatase
441	 56.48	+1	496387..497397	-	336	104773698	-	Ldb0588	-	putative 3-carboxymuconate cyclase
442	 49.87	0	497562..497942	+	126	104773699	-	Ldb0589	-	PTS system, enzyme IIA component (putative glucitol/sorbitol-specific)
443	 53.30	0	497952..499088	+	378	104773700	-	Ldb0590	-	hypothetical protein
444	 53.58	0	499134..499691	+	185	104773701	-	Ldb0591	-	rRNA methylase
445	 52.27	0	499723..500118	+	131	104773702	-	Ldb0592	-	hypothetical protein
446	 55.84	0	500138..502456	+	772	104773703	ftsK	Ldb0593	-	cell division protein FtsK
447	 56.45	+1	502462..503685	+	407	104773704	-	Ldb0594	-	putative peptidase
448	 54.47	0	503682..504935	+	417	104773705	-	Ldb0595	-	putative peptidase
449	 55.83	0	504932..505660	+	242	104773706	-	Ldb0596	-	putative dehydrogenase
450	 53.49	0	505729..506904	+	391	104773707	-	Ldb0597	-	hypothetical protein
451	 53.19	0	506931..507494	+	187	104773708	pgsA	Ldb0598	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
452	 58.73	+1	507700..508695	+	331	104773709	recA	Ldb0599	-	recombinase A
453	 55.29	0	508958..510601	+	547	104773710	-	Ldb0600	-	HD family metal-dependent phosphohydrolase
454	 53.83	0	510705..511904	+	399	104773711	rgpG	Ldb0601	-	putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase
455	 52.27	0	511957..512616	-	219	104773712	-	Ldb0602	-	hypothetical protein
456	 58.45	+1	512660..513937	+	425	104773713	comFA	Ldb0603	-	putative competence protein ComFA
457	 46.24	0	514701..515258	+	185	104773714	-	Ldb0606	-	ribosomal protein S30EA
458	 54.39	0	515418..517820	+	800	104773715	secA	Ldb0607	-	preprotein translocase subunit SecA
459	 55.16	0	518027..519025	+	332	104773716	prfB	Ldb0608	-	peptide chain release factor 2
460	 54.46	0	519036..519338	+	100	104773717	mp1	Ldb0609	-	hypothetical protein
461	 55.28	0	519289..520263	+	324	104773718	hprK	Ldb0610	-	HPr kinase/phosphorylase
462	 52.88	0	520273..521106	+	277	104773719	lgt	Ldb0611	-	prolipoprotein diacylglyceryl transferase
463	 56.93	+1	521112..522128	+	338	104773720	gpsA1	Ldb0612	-	glycerol-3-phosphate dehydrogenase
464	 56.59	+1	522200..523132	+	310	104773721	trxB1	Ldb0613	-	thioredoxin reductase
465	 53.74	0	523253..525295	+	680	104773722	uvrB	Ldb0614	-	excinuclease ABC subunit B
466	 56.44	+1	525285..528140	+	951	104773723	uvrA	Ldb0615	-	excinuclease ABC subunit A
467	 50.83	0	528237..528779	+	180	104773724	-	Ldb0616	-	hypothetical protein
468	 59.82	+1	528930..529703	+	257	104773725	dppA	Ldb0617	-	D-aminopeptidase
469	 52.07	0	530840..531757	+	305	104773726	-	Ldb0621	-	hypothetical protein
470	 55.72	0	531767..532789	+	340	104773727	-	Ldb0622	-	hypothetical protein
471	 56.06	+1	532797..533729	+	310	104773728	-	Ldb0623	-	hypothetical protein
472	 50.94	0	533797..534381	-	194	104773729	clpP	Ldb0624	-	ATP-dependent Clp protease proteolytic subunit
473	 54.04	0	537420..538322	+	300	104773730	-	Ldb0631	-	ABC transporter, permease protein
474	 57.12	+1	538315..539079	+	254	104773731	-	Ldb0632	-	ABC transporter, ATP-binding protein
475	 51.96	0	539429..540577	+	382	104773732	cggR	Ldb0634	-	central glycolytic genes regulator
476	 46.80	0	540615..541631	+	338	104773733	gap	Ldb0635	-	glyceraldehyde 3-phosphate dehydrogenase
477	 49.50	0	541728..542939	+	403	104773734	pgk	Ldb0636	-	phosphoglycerate kinase
478	 49.67	0	542958..543716	+	252	104773735	tpiA	Ldb0637	-	triosephosphate isomerase
479	 56.14	+1	544701..545270	-	189	104773736	-	Ldb0640	-	hypothetical protein
480	 53.11	0	545267..546151	-	294	104773737	-	Ldb0641	-	HAD superfamily hydrolase
481	 53.36	0	546313..546996	+	227	104773738	ung	Ldb0642	-	uracil-DNA glycosylase
482	 57.47	+1	547017..548006	+	329	104773739	pta	Ldb0643	-	phosphate acetyltransferase
483	 57.00	+1	548017..548502	+	161	104773740	-	Ldb0644	-	hypothetical protein
484	 56.61	+1	548577..549113	-	178	104773741	-	Ldb0645	-	putative exonuclease
485	 54.14	0	549235..550128	+	297	104773742	murB	Ldb0646	-	UDP-N-acetylenolpyruvoylglucosamine reductase
486	 51.71	0	550115..551257	+	380	104773743	potA1	Ldb0647	-	spermidine/putrescine ABC transporter ATP-binding protein
487	 52.03	0	551260..552072	+	270	104773744	potB1	Ldb0648	-	spermidine/putrescine ABC transporter permease
488	 54.35	0	552069..552872	+	267	104773745	potC1	Ldb0649	-	spermidine/putrescine ABC transporter permease
489	 50.78	0	552869..553951	+	360	104773746	potD1	Ldb0650	-	spermidine/putrescine ABC transporter substrate-binding protein
490	 55.24	0	553984..554823	+	279	104773747	-	Ldb0651	-	hypothetical protein
491	 55.51	0	555799..557151	+	450	104773748	manB	Ldb0654	-	phosphomannomutase
492	 55.97	+1	557300..558112	+	270	104773749	-	Ldb0655	-	HAD superfamily hydrolase
493	 52.25	0	559212..559655	+	147	104773750	-	Ldb0658	-	MarR family transcriptional regulator
494	 52.80	0	559649..560023	+	124	104773751	-	Ldb0659	-	hypothetical protein
495	 56.70	+1	560023..561939	+	638	104773752	-	Ldb0660	-	cation transporting P-type ATPase ( copper transporter)
496	 54.26	0	562091..562477	+	128	104773753	crcB1	Ldb0661	-	CrcB protein
497	 55.28	0	562482..562841	+	119	104773754	crcB2	Ldb0662	-	CrcB protein
498	 49.94	0	562825..563595	+	256	104773755	-	Ldb0663	-	hypothetical protein
499	 48.77	0	565741..565902	+	53	104773756	-	Ldb0666	-	hypothetical protein
500	 50.07	0	565942..567357	+	471	104773757	-	Ldb0667	-	hypothetical protein
501	 48.62	0	567407..567805	+	132	104773758	-	Ldb0668	-	hypothetical protein
502	 53.28	0	567808..568218	+	136	104773759	-	Ldb0669	-	hypothetical protein
503	 54.03	0	568303..568761	+	152	104773760	-	Ldb0670	-	phosphotyrosine protein phosphatase
504	 56.89	+1	568858..569256	+	132	104773761	-	Ldb0671	-	hypothetical protein
505	 52.70	0	569344..570975	-	543	104773762	-	Ldb0672	-	amino-acid transporter
506	 55.30	0	571235..571762	+	175	104773763	msrA	Ldb0673	-	peptide methionine sulfoxide reductase
507	 56.89	+1	571778..572626	+	282	104773764	-	Ldb0674	-	esterase
508	 51.13	0	572712..573593	-	293	104773765	-	Ldb0675	-	substrate binding protein
509	 52.46	0	573702..574229	+	175	104773766	-	Ldb0676	-	hypothetical protein
510	 52.60	0	574306..575037	+	243	104773767	-	Ldb0677	-	hypothetical protein
511	 56.58	+1	575196..576167	+	323	104773768	comGA	Ldb0678	-	putative competence protein ComGA
512	 49.07	0	577160..577483	+	107	104773769	comGC	Ldb0681	-	putative competence protein ComGC
513	 48.40	0	577480..577917	+	145	104773770	comGD	Ldb0682	-	putative competence protein ComGD
514	 53.93	0	577907..578173	+	88	104773771	-	Ldb0683	-	hypothetical protein
515	 47.40	0	578184..578759	+	191	104773772	-	Ldb0684	-	hypothetical protein
516	 52.95	0	578901..579899	+	332	104773773	-	Ldb0685	-	hypothetical protein
517	 50.76	0	579935..581122	+	395	104773774	ack	Ldb0686	-	acetate kinase
518	 46.79	0	581845..582000	+	51	104773775	-	Ldb0687	-	hypothetical protein
519	 51.79	0	582180..582905	+	241	104773776	-	Ldb0688	-	two-component system, response regulator
520	 52.23	0	582902..584467	+	521	104773777	-	Ldb0689	-	two-component system, sensor histidine kinase
521	 50.79	0	584514..586736	-	740	104773778	-	Ldb0690	-	putative phosphoglycerol transferase
522	 48.80	0	586885..587511	+	208	104773779	-	Ldb0691	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.