IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
376	 57.25	+1	427649..428434	+	261	104773633	murI	Ldb0510	-	glutamate racemase
377	 53.94	0	428513..429934	+	473	104773634	pepD1	Ldb0511	-	dipeptidase
378	 54.33	0	429948..431033	+	361	104773635	-	Ldb0512	-	hypothetical protein
379	 52.98	0	431241..431810	+	189	104773636	-	Ldb0513	-	hypothetical protein
380	 46.97	0	431922..432053	+	43	104773637	-	Ldb0514	-	hypothetical protein
381	 51.99	0	432140..432766	-	208	104773638	udk2	Ldb0515	-	uridine kinase
382	 52.29	0	432769..433422	-	217	104773639	udk1	Ldb0516	-	uridine kinase
383	 51.82	0	433972..434712	+	246	104773640	glnQ	Ldb0517	-	glutamine ABC transporter, ATP-binding protein
384	 52.38	0	434734..435573	+	279	104773641	glnH1	Ldb0518	-	glutamine ABC transporter, glutamine-binding protein
385	 50.93	0	435573..436214	+	213	104773642	glnM	Ldb0519	-	glutamine ABC transporter, permease protein
386	 50.52	0	436226..436894	+	222	104773643	glnP	Ldb0520	-	glutamine ABC transporter, permease protein
387	 51.89	0	436936..437781	+	281	104773644	glnH2	Ldb0521	-	glutamine ABC transporter, glutamine-binding protein
388	 52.84	0	437987..439498	+	503	104773645	ppx	Ldb0522	-	exopolyphosphatase
389	 53.79	0	439502..441667	+	721	104773646	ppk	Ldb0523	-	polyphosphate kinase
390	 51.23	0	443099..443422	+	107	104773647	-	Ldb0526	-	hypothetical protein
391	 43.90	-1	444015..444260	+	81	104773648	-	Ldb0527	-	hypothetical protein
392	 50.40	0	444407..444904	+	165	104773649	-	Ldb0528	-	hypothetical protein
393	 56.68	+1	444972..445892	+	306	104773650	rbsK	Ldb0529	-	ribokinase
394	 52.69	0	445908..446558	+	216	104773651	rpe	Ldb0530	-	ribulose-phosphate 3-epimerase
395	 54.40	0	446571..447263	+	230	104773652	rpiA	Ldb0531	-	ribose 5-phosphate isomerase
396	 56.20	+1	447359..448294	+	311	104773653	-	Ldb0532	-	purine nucleosidase
397	 52.84	0	448303..449025	+	240	104773654	-	Ldb0533	-	GntR family transcriptional regulator
398	 53.18	0	449229..451631	+	800	104773655	-	Ldb0534	-	putative phosphoketolase
399	 54.28	0	452052..452600	+	182	104773656	-	Ldb0535	-	hypothetical protein
400	 50.85	0	453094..454440	+	448	104773657	-	Ldb0537	-	hypothetical protein
401	 52.98	0	454550..455119	+	189	104773658	hprT	Ldb0538	-	hypoxanthine-guanine phosphoribosyltransferase
402	 55.14	0	455201..456493	-	430	104773659	-	Ldb0539	-	amino acid permease
403	 55.17	0	456599..457285	+	228	104773660	-	Ldb0540	-	hypothetical protein
404	 52.53	0	457282..458526	+	414	104773661	-	Ldb0541	-	DEAD-box ATP dependent DNA helicase
405	 56.52	+1	458528..459838	+	436	104773662	-	Ldb0542	-	PTS system, enzyme IIC component (putative cellobiose-specific)
406	 53.35	0	460316..461389	+	357	104773663	-	Ldb0544	-	hypothetical protein
407	 54.75	0	461621..462904	+	427	104773664	pyrP	Ldb0545	-	Uracil permease
408	 55.40	0	463017..464267	+	416	104773665	-	Ldb0546	-	hypothetical protein
409	 55.51	0	464351..466438	-	695	104773666	-	Ldb0547	-	ornithine decarboxylase
410	 48.97	0	466478..466720	-	80	104773667	-	Ldb0548	-	hypothetical protein
411	 50.77	0	468694..468888	-	64	104773668	-	Ldb0552	-	hypothetical protein
412	 55.99	+1	468990..470132	+	380	104773669	-	Ldb0553	-	UDP-N-acetylglucosamine 2-epimerase
413	 50.21	0	470174..470653	-	159	104773670	-	Ldb0554	-	hypothetical protein
414	 51.90	0	470646..471092	-	148	104773671	flaV	Ldb0555	-	flavodoxin
415	 53.74	0	471239..472066	+	275	104773672	pepM	Ldb0556	-	methionine aminopeptidase
416	 49.51	0	472069..472983	+	304	104773673	-	Ldb0557	-	hypothetical protein
417	 51.48	0	473107..474021	+	304	104773674	galU	Ldb0558	-	UTP-glucose-1-phosphate uridylyltransferase
418	 56.03	+1	474082..474363	-	93	104773675	-	Ldb0559	-	hypothetical protein
419	 50.46	0	474479..475447	+	322	104773676	-	Ldb0560	-	hypothetical protein
420	 57.70	+1	475829..477211	-	460	104773677	-	Ldb0561	-	methyltransferase
421	 55.51	0	477372..478187	+	271	104773678	recX	Ldb0562	-	recombination regulator RecX
422	 54.51	0	478209..478685	+	158	104773679	-	Ldb0563	-	hypothetical protein
423	 54.70	0	478682..479149	-	155	104773680	-	Ldb0564	-	hypothetical protein
424	 53.96	0	479250..480107	+	285	104773681	-	Ldb0565	-	hypothetical protein
425	 56.23	+1	480114..481685	+	523	104773682	prfC	Ldb0566	-	peptide chain release factor 3
426	 43.92	-1	481787..481975	-	62	104773683	-	Ldb0567	-	hypothetical protein
427	 59.84	+1	481997..482245	-	82	104773684	-	Ldb0568	-	hypothetical protein
428	 45.88	0	483955..484233	-	92	104773685	-	Ldb0573	-	hypothetical protein
429	 54.74	0	484349..486544	-	731	104773686	clpE	Ldb0574	-	ATP-dependent Clp protease, ATP-binding subunit ClpE
430	 47.76	0	486713..486913	+	66	104773687	-	Ldb0575	-	hypothetical protein
431	 43.07	-1	487021..487287	+	88	104773688	ptsH	Ldb0576	-	phosphocarrier protein HPr
432	 51.22	0	487287..489014	+	575	104773689	ptsI	Ldb0577	-	phosphoenolpyruvate-protein phosphotransferase (enzyme I of the phosphotransferase system)
433	 46.17	0	489193..489597	+	134	104773690	spx	Ldb0578	-	hypothetical protein
434	 55.73	0	489701..490450	+	249	104773691	mecA	Ldb0579	-	adaptor protein
435	 47.91	0	491425..492069	-	214	104773692	-	Ldb0582	-	hypothetical protein
436	 54.06	0	492150..492752	-	200	104773693	-	Ldb0583	-	hypothetical protein
437	 52.11	0	492850..493488	+	212	104773694	-	Ldb0584	-	hypothetical protein
438	 56.64	+1	493485..494282	+	265	104773695	ppnK	Ldb0585	-	inorganic polyphosphate/ATP-NAD kinase
439	 57.21	+1	494282..495190	+	302	104773696	-	Ldb0586	-	pseudouridylate synthase
440	 52.29	0	495536..496363	-	275	104773697	upk	Ldb0587	-	undecaprenyl pyrophosphate phosphatase
441	 56.48	+1	496387..497397	-	336	104773698	-	Ldb0588	-	putative 3-carboxymuconate cyclase
442	 49.87	0	497562..497942	+	126	104773699	-	Ldb0589	-	PTS system, enzyme IIA component (putative glucitol/sorbitol-specific)
443	 53.30	0	497952..499088	+	378	104773700	-	Ldb0590	-	hypothetical protein
444	 53.58	0	499134..499691	+	185	104773701	-	Ldb0591	-	rRNA methylase
445	 52.27	0	499723..500118	+	131	104773702	-	Ldb0592	-	hypothetical protein
446	 55.84	0	500138..502456	+	772	104773703	ftsK	Ldb0593	-	cell division protein FtsK
447	 56.45	+1	502462..503685	+	407	104773704	-	Ldb0594	-	putative peptidase
448	 54.47	0	503682..504935	+	417	104773705	-	Ldb0595	-	putative peptidase
449	 55.83	0	504932..505660	+	242	104773706	-	Ldb0596	-	putative dehydrogenase
450	 53.49	0	505729..506904	+	391	104773707	-	Ldb0597	-	hypothetical protein
451	 53.19	0	506931..507494	+	187	104773708	pgsA	Ldb0598	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
452	 58.73	+1	507700..508695	+	331	104773709	recA	Ldb0599	-	recombinase A
453	 55.29	0	508958..510601	+	547	104773710	-	Ldb0600	-	HD family metal-dependent phosphohydrolase
454	 53.83	0	510705..511904	+	399	104773711	rgpG	Ldb0601	-	putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase
455	 52.27	0	511957..512616	-	219	104773712	-	Ldb0602	-	hypothetical protein
456	 58.45	+1	512660..513937	+	425	104773713	comFA	Ldb0603	-	putative competence protein ComFA
457	 46.24	0	514701..515258	+	185	104773714	-	Ldb0606	-	ribosomal protein S30EA
458	 54.39	0	515418..517820	+	800	104773715	secA	Ldb0607	-	preprotein translocase subunit SecA
459	 55.16	0	518027..519025	+	332	104773716	prfB	Ldb0608	-	peptide chain release factor 2
460	 54.46	0	519036..519338	+	100	104773717	mp1	Ldb0609	-	hypothetical protein
461	 55.28	0	519289..520263	+	324	104773718	hprK	Ldb0610	-	HPr kinase/phosphorylase
462	 52.88	0	520273..521106	+	277	104773719	lgt	Ldb0611	-	prolipoprotein diacylglyceryl transferase
463	 56.93	+1	521112..522128	+	338	104773720	gpsA1	Ldb0612	-	glycerol-3-phosphate dehydrogenase
464	 56.59	+1	522200..523132	+	310	104773721	trxB1	Ldb0613	-	thioredoxin reductase
465	 53.74	0	523253..525295	+	680	104773722	uvrB	Ldb0614	-	excinuclease ABC subunit B
466	 56.44	+1	525285..528140	+	951	104773723	uvrA	Ldb0615	-	excinuclease ABC subunit A
467	 50.83	0	528237..528779	+	180	104773724	-	Ldb0616	-	hypothetical protein
468	 59.82	+1	528930..529703	+	257	104773725	dppA	Ldb0617	-	D-aminopeptidase
469	 52.07	0	530840..531757	+	305	104773726	-	Ldb0621	-	hypothetical protein
470	 55.72	0	531767..532789	+	340	104773727	-	Ldb0622	-	hypothetical protein
471	 56.06	+1	532797..533729	+	310	104773728	-	Ldb0623	-	hypothetical protein
472	 50.94	0	533797..534381	-	194	104773729	clpP	Ldb0624	-	ATP-dependent Clp protease proteolytic subunit
473	 54.04	0	537420..538322	+	300	104773730	-	Ldb0631	-	ABC transporter, permease protein
474	 57.12	+1	538315..539079	+	254	104773731	-	Ldb0632	-	ABC transporter, ATP-binding protein
475	 51.96	0	539429..540577	+	382	104773732	cggR	Ldb0634	-	central glycolytic genes regulator
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.