IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
326	 56.34	+1	371800..372855	+	351	104773583	-	Ldb0442	-	hypothetical protein
327	 50.64	0	373616..373771	+	51	104773584	-	Ldb0446	-	hypothetical protein
328	 55.08	0	373917..375029	+	370	104773585	-	Ldb0447	-	hypothetical protein
329	 52.62	0	375044..376111	+	355	104773586	-	Ldb0448	-	hypothetical protein
330	 57.69	+1	376178..376879	+	233	104773587	-	Ldb0449	-	GntR family transcriptional regulator
331	 53.42	0	377042..378181	+	379	104773588	tarB	Ldb0450	-	putative CDP-glycerol:glycerophosphate glycerophosphotransferase
332	 51.33	0	378185..379612	+	475	104773589	-	Ldb0451	-	polysaccharide repeat-containing transporter
333	 56.46	+1	379664..380398	+	244	104773590	-	Ldb0452	-	glycosyltransferase
334	 53.41	0	380398..381498	+	366	104773591	-	Ldb0453	-	glycosyltransferase
335	 49.57	0	381495..382196	+	233	104773592	-	Ldb0454	-	glycosyltransferase
336	 53.55	0	382301..383131	+	276	104773593	nadE	Ldb0455	-	NAD synthetase
337	 53.62	0	383337..386003	+	888	104773594	-	Ldb0456	-	cation transporting P-type ATPase ( Ca2+ transporter)
338	 36.39	-2	386217..386543	+	108	104773595	-	Ldb0457	-	hypothetical protein
339	 52.27	0	386687..386950	+	87	104773596	-	Ldb0458	-	hypothetical protein
340	 45.20	-1	386971..387147	-	58	104773597	-	Ldb0459	-	hypothetical protein
341	 51.08	0	387255..387857	+	200	104773598	-	Ldb0460	-	ABC transporter, ATP-binding protein
342	 52.81	0	387861..388358	+	165	104773599	-	Ldb0461	-	hypothetical protein
343	 56.09	+1	388592..389215	+	207	104773600	-	Ldb0463	-	hypothetical protein
344	 53.67	0	389229..389882	+	217	104773601	-	Ldb0464	-	putative muramidase
345	 55.48	0	389971..392232	+	753	104773602	pcrA	Ldb0465	-	ATP-dependent DNA helicase PcrA
346	 54.96	0	392243..394258	+	671	104773603	ligA	Ldb0466	-	NAD-dependent DNA ligase
347	 54.42	0	394282..395400	+	372	104773604	-	Ldb0467	-	hypothetical protein
348	 45.42	-1	395412..395717	+	101	104773605	gatC	Ldb0468	-	glutamyl-tRNA(Gln) amidotransferase subunit C
349	 52.11	0	395717..397159	+	480	104773606	gatA	Ldb0469	-	glutamyl-tRNA(Gln) amidotransferase subunit A
350	 51.29	0	397165..398595	+	476	104773607	gatB	Ldb0470	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
351	 55.12	0	398631..399557	+	308	104773608	-	Ldb0471	-	putative lipid kinase
352	 47.30	0	399618..400340	+	240	104773609	-	Ldb0472	-	hypothetical protein
353	 51.84	0	400343..401698	+	451	104773610	-	Ldb0473	-	methyltransferase
354	 43.36	-1	401882..402739	+	285	104773611	-	Ldb0474	-	putative restriction endonuclease
355	 56.60	+1	402993..403628	+	211	104773612	-	Ldb0475	-	carbonate dehydratase
356	 57.23	+1	403802..404119	-	105	104773613	-	Ldb0476	-	hypothetical protein
357	 49.12	0	406465..406692	+	75	104773614	copZ	Ldb0480	-	putative metal binding protein ( copper chaperone CopZ)
358	 50.90	0	406730..407008	+	92	104773615	-	Ldb0481	-	hypothetical protein
359	 53.76	0	407033..407683	+	216	104773616	-	Ldb0482	-	Crp family transcriptional regulator
360	 54.74	0	407738..409078	-	446	104773617	brnQ	Ldb0483	-	branched chain amino acid ABC transporter carrier protein
361	 51.73	0	409224..409886	+	220	104773618	-	Ldb0484	-	hypothetical protein
362	 48.52	0	409930..410436	+	168	104773619	-	Ldb0485	-	NUDIX family hydrolase
363	 49.22	0	410732..411241	+	169	104773620	-	Ldb0486	-	hypothetical protein
364	 55.26	0	411294..411740	+	148	104773621	-	Ldb0487	-	hypothetical protein
365	 51.45	0	411709..411984	+	91	104773622	-	Ldb0488	-	hypothetical protein
366	 50.14	0	412715..413071	+	118	104773623	-	Ldb0492	-	hypothetical protein
367	 51.03	0	413189..413674	+	161	104773624	-	Ldb0493	-	AsnC family transcriptional regulator
368	 52.15	0	413883..415694	+	603	104773625	glmS	Ldb0494	-	D-fructose-6-phosphate amidotransferase
369	 53.22	0	417056..419785	-	909	104773626	ppc	Ldb0501	-	phosphoenolpyruvate carboxylase
370	 54.39	0	419952..420896	-	314	104773627	-	Ldb0502	-	putative permease
371	 53.23	0	421077..422699	+	540	104773628	-	Ldb0503	-	ABC transporter, ATP-binding protein
372	 49.05	0	424455..424664	+	69	104773629	-	Ldb0506	-	hypothetical protein
373	 53.01	0	424721..425086	-	121	104773630	-	Ldb0507	-	hypothetical protein
374	 54.08	0	425329..426528	-	399	104773631	-	Ldb0508	-	permease
375	 54.06	0	426668..427381	-	237	104773632	-	Ldb0509	-	hypothetical protein
376	 57.25	+1	427649..428434	+	261	104773633	murI	Ldb0510	-	glutamate racemase
377	 53.94	0	428513..429934	+	473	104773634	pepD1	Ldb0511	-	dipeptidase
378	 54.33	0	429948..431033	+	361	104773635	-	Ldb0512	-	hypothetical protein
379	 52.98	0	431241..431810	+	189	104773636	-	Ldb0513	-	hypothetical protein
380	 46.97	0	431922..432053	+	43	104773637	-	Ldb0514	-	hypothetical protein
381	 51.99	0	432140..432766	-	208	104773638	udk2	Ldb0515	-	uridine kinase
382	 52.29	0	432769..433422	-	217	104773639	udk1	Ldb0516	-	uridine kinase
383	 51.82	0	433972..434712	+	246	104773640	glnQ	Ldb0517	-	glutamine ABC transporter, ATP-binding protein
384	 52.38	0	434734..435573	+	279	104773641	glnH1	Ldb0518	-	glutamine ABC transporter, glutamine-binding protein
385	 50.93	0	435573..436214	+	213	104773642	glnM	Ldb0519	-	glutamine ABC transporter, permease protein
386	 50.52	0	436226..436894	+	222	104773643	glnP	Ldb0520	-	glutamine ABC transporter, permease protein
387	 51.89	0	436936..437781	+	281	104773644	glnH2	Ldb0521	-	glutamine ABC transporter, glutamine-binding protein
388	 52.84	0	437987..439498	+	503	104773645	ppx	Ldb0522	-	exopolyphosphatase
389	 53.79	0	439502..441667	+	721	104773646	ppk	Ldb0523	-	polyphosphate kinase
390	 51.23	0	443099..443422	+	107	104773647	-	Ldb0526	-	hypothetical protein
391	 43.90	-1	444015..444260	+	81	104773648	-	Ldb0527	-	hypothetical protein
392	 50.40	0	444407..444904	+	165	104773649	-	Ldb0528	-	hypothetical protein
393	 56.68	+1	444972..445892	+	306	104773650	rbsK	Ldb0529	-	ribokinase
394	 52.69	0	445908..446558	+	216	104773651	rpe	Ldb0530	-	ribulose-phosphate 3-epimerase
395	 54.40	0	446571..447263	+	230	104773652	rpiA	Ldb0531	-	ribose 5-phosphate isomerase
396	 56.20	+1	447359..448294	+	311	104773653	-	Ldb0532	-	purine nucleosidase
397	 52.84	0	448303..449025	+	240	104773654	-	Ldb0533	-	GntR family transcriptional regulator
398	 53.18	0	449229..451631	+	800	104773655	-	Ldb0534	-	putative phosphoketolase
399	 54.28	0	452052..452600	+	182	104773656	-	Ldb0535	-	hypothetical protein
400	 50.85	0	453094..454440	+	448	104773657	-	Ldb0537	-	hypothetical protein
401	 52.98	0	454550..455119	+	189	104773658	hprT	Ldb0538	-	hypoxanthine-guanine phosphoribosyltransferase
402	 55.14	0	455201..456493	-	430	104773659	-	Ldb0539	-	amino acid permease
403	 55.17	0	456599..457285	+	228	104773660	-	Ldb0540	-	hypothetical protein
404	 52.53	0	457282..458526	+	414	104773661	-	Ldb0541	-	DEAD-box ATP dependent DNA helicase
405	 56.52	+1	458528..459838	+	436	104773662	-	Ldb0542	-	PTS system, enzyme IIC component (putative cellobiose-specific)
406	 53.35	0	460316..461389	+	357	104773663	-	Ldb0544	-	hypothetical protein
407	 54.75	0	461621..462904	+	427	104773664	pyrP	Ldb0545	-	Uracil permease
408	 55.40	0	463017..464267	+	416	104773665	-	Ldb0546	-	hypothetical protein
409	 55.51	0	464351..466438	-	695	104773666	-	Ldb0547	-	ornithine decarboxylase
410	 48.97	0	466478..466720	-	80	104773667	-	Ldb0548	-	hypothetical protein
411	 50.77	0	468694..468888	-	64	104773668	-	Ldb0552	-	hypothetical protein
412	 55.99	+1	468990..470132	+	380	104773669	-	Ldb0553	-	UDP-N-acetylglucosamine 2-epimerase
413	 50.21	0	470174..470653	-	159	104773670	-	Ldb0554	-	hypothetical protein
414	 51.90	0	470646..471092	-	148	104773671	flaV	Ldb0555	-	flavodoxin
415	 53.74	0	471239..472066	+	275	104773672	pepM	Ldb0556	-	methionine aminopeptidase
416	 49.51	0	472069..472983	+	304	104773673	-	Ldb0557	-	hypothetical protein
417	 51.48	0	473107..474021	+	304	104773674	galU	Ldb0558	-	UTP-glucose-1-phosphate uridylyltransferase
418	 56.03	+1	474082..474363	-	93	104773675	-	Ldb0559	-	hypothetical protein
419	 50.46	0	474479..475447	+	322	104773676	-	Ldb0560	-	hypothetical protein
420	 57.70	+1	475829..477211	-	460	104773677	-	Ldb0561	-	methyltransferase
421	 55.51	0	477372..478187	+	271	104773678	recX	Ldb0562	-	recombination regulator RecX
422	 54.51	0	478209..478685	+	158	104773679	-	Ldb0563	-	hypothetical protein
423	 54.70	0	478682..479149	-	155	104773680	-	Ldb0564	-	hypothetical protein
424	 53.96	0	479250..480107	+	285	104773681	-	Ldb0565	-	hypothetical protein
425	 56.23	+1	480114..481685	+	523	104773682	prfC	Ldb0566	-	peptide chain release factor 3
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.