IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
284	 45.95	0	346607..346915	+	102	104773541	rpsJ	Ldb0395	-	30S ribosomal protein S10
285	 45.08	-1	346941..347570	+	209	104773542	rplC	Ldb0396	-	50S ribosomal protein L3
286	 48.06	0	347585..348202	+	205	104773543	rplD	Ldb0397	-	50S ribosomal protein L4
287	 44.78	-1	348202..348498	+	98	104773544	rplW	Ldb0398	-	50S ribosomal protein L23
288	 47.67	0	348524..349360	+	278	104773545	rplB	Ldb0399	-	50S ribosomal protein L2
289	 46.74	0	349378..349653	+	91	104773546	rpsS	Ldb0400	-	30S ribosomal protein S19
290	 43.79	-1	349675..350028	+	117	104773547	rplV	Ldb0401	-	50S ribosomal protein L22
291	 47.77	0	350042..350713	+	223	104773548	rpsC	Ldb0402	-	30S ribosomal protein S3
292	 48.42	0	350713..351156	+	147	104773549	rplP	Ldb0403	-	50S ribosomal protein L16
293	 39.39	-2	351146..351343	+	65	104773550	rpmC	Ldb0404	-	50S ribosomal protein L29
294	 42.32	-1	351362..351628	+	88	104773551	rpsQ	Ldb0405	-	30S ribosomal protein S17
295	 48.24	0	351659..352027	+	122	104773552	rplN	Ldb0406	-	50S ribosomal protein L14
296	 44.17	-1	352044..352283	+	79	104773553	rplX	Ldb0407	-	50S ribosomal protein L24
297	 44.38	-1	352303..352845	+	180	104773554	rplE	Ldb0408	-	50S ribosomal protein L5
298	 46.77	0	352860..353045	+	61	104773555	rpsN	Ldb0409	-	30S ribosomal protein S14
299	 43.86	-1	353068..353466	+	132	104773556	rpsH	Ldb0410	-	30S ribosomal protein S8
300	 46.33	0	353491..354021	+	176	104773557	rplF	Ldb0411	-	50S ribosomal protein L6
301	 47.50	0	354048..354407	+	119	104773558	rplR	Ldb0412	-	50S ribosomal protein L18
302	 47.95	0	354424..354936	+	170	104773559	rpsE	Ldb0413	-	30S ribosomal protein S5
303	 39.78	-2	354948..355133	+	61	104773560	rpmD	Ldb0414	-	50S ribosomal protein L30
304	 47.39	0	355154..355594	+	146	104773561	rplO	Ldb0415	-	50S ribosomal protein L15
305	 44.83	-1	355594..356889	+	431	104773562	secY	Ldb0416	-	preprotein translocase subunit SecY
306	 46.33	0	356900..357553	+	217	104773563	adk	Ldb0417	-	adenylate kinase
307	 41.89	-1	357629..357850	+	73	104773564	infA	Ldb0418	-	translation initiation factor IF-1
308	 41.88	-1	357865..357981	+	38	104773565	rpmJ	Ldb0419	-	50S ribosomal protein L36
309	 45.87	0	358007..358357	+	116	104773566	rpsM	Ldb0420	-	30S ribosomal protein S13
310	 48.46	0	358386..358775	+	129	104773567	rpsK	Ldb0421	-	30S ribosomal protein S11
311	 46.96	0	358819..359757	+	312	104773568	rpoA	Ldb0422	-	DNA-directed RNA polymerase subunit alpha
312	 47.14	0	359781..360164	+	127	104773569	rplQ	Ldb0423	-	50S ribosomal protein L17
313	 53.00	0	360354..361202	+	282	104773570	cbiO1	Ldb0424	-	cobalt transporter ATP-binding subunit
314	 55.44	0	361178..362041	+	287	104773571	cbiO2	Ldb0425	-	cobalt transporter ATP-binding subunit
315	 53.51	0	362034..362831	+	265	104773572	cbiQ	Ldb0426	-	cobalt ABC transporter permease
316	 53.16	0	362828..363619	+	263	104773573	truA	Ldb0427	-	tRNA pseudouridine synthase A
317	 42.57	-1	363725..364168	+	147	104773574	rplM	Ldb0428	-	50S ribosomal protein L13
318	 48.99	0	364181..364576	+	131	104773575	rpsI	Ldb0429	-	30S ribosomal protein S9
319	 40.30	-1	365059..365259	+	66	104773576	-	Ldb0430	-	hypothetical protein
320	 37.94	-2	365249..365530	+	93	104773577	-	Ldb0431	-	hypothetical protein
321	 40.97	-1	365564..365707	+	47	104773578	-	Ldb0432	-	hypothetical protein
322	 52.33	0	367398..368018	+	206	104773579	-	Ldb0435	-	MutT/NUDIX family hydrolase
323	 52.85	0	369356..369847	+	163	104773580	-	Ldb0438	-	hypothetical protein
324	 46.20	0	370137..370307	+	56	104773581	-	Ldb0440	-	hypothetical protein
325	 54.40	0	370632..371813	+	393	104773582	-	Ldb0441	-	aromatic amino acid aminotransferase
326	 56.34	+1	371800..372855	+	351	104773583	-	Ldb0442	-	hypothetical protein
327	 50.64	0	373616..373771	+	51	104773584	-	Ldb0446	-	hypothetical protein
328	 55.08	0	373917..375029	+	370	104773585	-	Ldb0447	-	hypothetical protein
329	 52.62	0	375044..376111	+	355	104773586	-	Ldb0448	-	hypothetical protein
330	 57.69	+1	376178..376879	+	233	104773587	-	Ldb0449	-	GntR family transcriptional regulator
331	 53.42	0	377042..378181	+	379	104773588	tarB	Ldb0450	-	putative CDP-glycerol:glycerophosphate glycerophosphotransferase
332	 51.33	0	378185..379612	+	475	104773589	-	Ldb0451	-	polysaccharide repeat-containing transporter
333	 56.46	+1	379664..380398	+	244	104773590	-	Ldb0452	-	glycosyltransferase
334	 53.41	0	380398..381498	+	366	104773591	-	Ldb0453	-	glycosyltransferase
335	 49.57	0	381495..382196	+	233	104773592	-	Ldb0454	-	glycosyltransferase
336	 53.55	0	382301..383131	+	276	104773593	nadE	Ldb0455	-	NAD synthetase
337	 53.62	0	383337..386003	+	888	104773594	-	Ldb0456	-	cation transporting P-type ATPase ( Ca2+ transporter)
338	 36.39	-2	386217..386543	+	108	104773595	-	Ldb0457	-	hypothetical protein
339	 52.27	0	386687..386950	+	87	104773596	-	Ldb0458	-	hypothetical protein
340	 45.20	-1	386971..387147	-	58	104773597	-	Ldb0459	-	hypothetical protein
341	 51.08	0	387255..387857	+	200	104773598	-	Ldb0460	-	ABC transporter, ATP-binding protein
342	 52.81	0	387861..388358	+	165	104773599	-	Ldb0461	-	hypothetical protein
343	 56.09	+1	388592..389215	+	207	104773600	-	Ldb0463	-	hypothetical protein
344	 53.67	0	389229..389882	+	217	104773601	-	Ldb0464	-	putative muramidase
345	 55.48	0	389971..392232	+	753	104773602	pcrA	Ldb0465	-	ATP-dependent DNA helicase PcrA
346	 54.96	0	392243..394258	+	671	104773603	ligA	Ldb0466	-	NAD-dependent DNA ligase
347	 54.42	0	394282..395400	+	372	104773604	-	Ldb0467	-	hypothetical protein
348	 45.42	-1	395412..395717	+	101	104773605	gatC	Ldb0468	-	glutamyl-tRNA(Gln) amidotransferase subunit C
349	 52.11	0	395717..397159	+	480	104773606	gatA	Ldb0469	-	glutamyl-tRNA(Gln) amidotransferase subunit A
350	 51.29	0	397165..398595	+	476	104773607	gatB	Ldb0470	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
351	 55.12	0	398631..399557	+	308	104773608	-	Ldb0471	-	putative lipid kinase
352	 47.30	0	399618..400340	+	240	104773609	-	Ldb0472	-	hypothetical protein
353	 51.84	0	400343..401698	+	451	104773610	-	Ldb0473	-	methyltransferase
354	 43.36	-1	401882..402739	+	285	104773611	-	Ldb0474	-	putative restriction endonuclease
355	 56.60	+1	402993..403628	+	211	104773612	-	Ldb0475	-	carbonate dehydratase
356	 57.23	+1	403802..404119	-	105	104773613	-	Ldb0476	-	hypothetical protein
357	 49.12	0	406465..406692	+	75	104773614	copZ	Ldb0480	-	putative metal binding protein ( copper chaperone CopZ)
358	 50.90	0	406730..407008	+	92	104773615	-	Ldb0481	-	hypothetical protein
359	 53.76	0	407033..407683	+	216	104773616	-	Ldb0482	-	Crp family transcriptional regulator
360	 54.74	0	407738..409078	-	446	104773617	brnQ	Ldb0483	-	branched chain amino acid ABC transporter carrier protein
361	 51.73	0	409224..409886	+	220	104773618	-	Ldb0484	-	hypothetical protein
362	 48.52	0	409930..410436	+	168	104773619	-	Ldb0485	-	NUDIX family hydrolase
363	 49.22	0	410732..411241	+	169	104773620	-	Ldb0486	-	hypothetical protein
364	 55.26	0	411294..411740	+	148	104773621	-	Ldb0487	-	hypothetical protein
365	 51.45	0	411709..411984	+	91	104773622	-	Ldb0488	-	hypothetical protein
366	 50.14	0	412715..413071	+	118	104773623	-	Ldb0492	-	hypothetical protein
367	 51.03	0	413189..413674	+	161	104773624	-	Ldb0493	-	AsnC family transcriptional regulator
368	 52.15	0	413883..415694	+	603	104773625	glmS	Ldb0494	-	D-fructose-6-phosphate amidotransferase
369	 53.22	0	417056..419785	-	909	104773626	ppc	Ldb0501	-	phosphoenolpyruvate carboxylase
370	 54.39	0	419952..420896	-	314	104773627	-	Ldb0502	-	putative permease
371	 53.23	0	421077..422699	+	540	104773628	-	Ldb0503	-	ABC transporter, ATP-binding protein
372	 49.05	0	424455..424664	+	69	104773629	-	Ldb0506	-	hypothetical protein
373	 53.01	0	424721..425086	-	121	104773630	-	Ldb0507	-	hypothetical protein
374	 54.08	0	425329..426528	-	399	104773631	-	Ldb0508	-	permease
375	 54.06	0	426668..427381	-	237	104773632	-	Ldb0509	-	hypothetical protein
376	 57.25	+1	427649..428434	+	261	104773633	murI	Ldb0510	-	glutamate racemase
377	 53.94	0	428513..429934	+	473	104773634	pepD1	Ldb0511	-	dipeptidase
378	 54.33	0	429948..431033	+	361	104773635	-	Ldb0512	-	hypothetical protein
379	 52.98	0	431241..431810	+	189	104773636	-	Ldb0513	-	hypothetical protein
380	 46.97	0	431922..432053	+	43	104773637	-	Ldb0514	-	hypothetical protein
381	 51.99	0	432140..432766	-	208	104773638	udk2	Ldb0515	-	uridine kinase
382	 52.29	0	432769..433422	-	217	104773639	udk1	Ldb0516	-	uridine kinase
383	 51.82	0	433972..434712	+	246	104773640	glnQ	Ldb0517	-	glutamine ABC transporter, ATP-binding protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.