IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 56.55	+1	261781..262383	+	200	104773469	-	Ldb0306	-	Pnp/Udp family phosphorylase
213	 52.10	0	262463..263725	-	420	104773470	-	Ldb0307	-	hypothetical protein
214	 54.76	0	263819..264784	-	321	104773471	-	Ldb0308	-	CRP family transcriptional regulator
215	 57.98	+1	266275..267207	+	310	104773472	mmuM	Ldb0311	-	homocysteine methyltransferase
216	 54.44	0	267263..267712	+	149	104773473	-	Ldb0312	-	hypothetical protein
217	 52.94	0	267948..268151	+	67	104773474	-	Ldb0313	-	hypothetical protein
218	 52.00	0	268210..268659	+	149	104773475	-	Ldb0314	-	MarR family transcriptional regulator
219	 56.87	+1	268674..269663	+	329	104773476	ansA	Ldb0315	-	asparaginase
220	 51.15	0	270702..271178	+	158	104773477	mscL	Ldb0318	-	large-conductance mechanosensitive channel
221	 53.67	0	271258..272781	-	507	104773478	pncB	Ldb0319	-	nicotinate phosphoribosyltransferase
222	 56.58	+1	273997..274551	-	184	104773479	pncA	Ldb0322	-	nicotinamidase
223	 54.43	0	274806..275663	+	285	104773480	-	Ldb0323	-	hypothetical protein
224	 54.31	0	275656..275922	-	88	104773481	-	Ldb0324	-	hypothetical protein
225	 55.98	+1	276018..276794	-	258	104773482	-	Ldb0325	-	NUDIX family hydrolase
226	 43.65	-1	276961..278259	+	432	104773483	-	Ldb0326	-	putative transposase
227	 45.49	-1	278529..278816	+	95	104773484	-	Ldb0327	-	hypothetical protein
228	 50.40	0	279004..279255	+	83	104773485	-	Ldb0328	-	hypothetical protein
229	 35.59	-2	279389..280009	-	206	104773486	-	Ldb0329	-	hypothetical protein
230	 39.70	-2	280011..280811	-	266	104773487	-	Ldb0330	-	ABC transporter, permease protein
231	 41.07	-1	280808..281518	-	236	104773488	-	Ldb0331	-	ABC transporter, ATP-binding protein
232	 36.59	-2	281643..281888	+	81	104773489	-	Ldb0332	-	hypothetical protein
233	 32.63	-2	281910..282194	+	94	104773490	-	Ldb0333	-	hypothetical protein
234	 52.62	0	283792..284460	+	222	104773491	-	Ldb0336	-	hypothetical protein
235	 53.80	0	284781..285806	+	341	104773492	trpS	Ldb0338	-	tryptophanyl-tRNA synthetase II
236	 53.42	0	285808..286290	+	160	104773493	-	Ldb0339	-	putative dCMP deaminase
237	 51.87	0	286163..286885	+	240	104773494	-	Ldb0340	-	hypothetical protein
238	 54.14	0	287244..289934	+	896	104773495	-	Ldb0341	-	cation transporting P-type ATPase ( Mg2+ transporter)
239	 53.30	0	290070..292052	+	660	104773496	metS	Ldb0342	-	methionyl-tRNA synthetase
240	 53.21	0	292052..292831	+	259	104773497	-	Ldb0343	-	TatD family deoxyribonuclease
241	 53.93	0	292815..293387	+	190	104773498	-	Ldb0344	-	hypothetical protein
242	 56.45	+1	293362..294252	+	296	104773499	ksgA	Ldb0345	-	dimethyladenosine transferase
243	 46.43	0	294312..294563	+	83	104773500	-	Ldb0346	-	hypothetical protein
244	 54.03	0	294669..295499	+	276	104773501	purR	Ldb0347	-	purine operon repressor
245	 53.54	0	295561..296946	+	461	104773502	gcaD	Ldb0348	-	UDP-N-acetylglucosamine pyrophosphorylase
246	 46.21	0	297116..297814	+	232	104773503	-	Ldb0349	-	hypothetical protein
247	 53.62	0	298044..299024	+	326	104773504	prs1	Ldb0350	-	ribose-phosphate pyrophosphokinase
248	 55.78	0	299096..300409	-	437	104773505	-	Ldb0351	-	HD superfamily phosphohydrolase
249	 49.12	0	300549..300947	+	132	104773506	-	Ldb0352	-	hypothetical protein
250	 50.53	0	300993..301562	+	189	104773507	rpoE	Ldb0353	-	DNA-directed RNA polymerase subunit delta
251	 53.33	0	301679..303298	+	539	104773508	pyrG	Ldb0354	-	CTP synthetase
252	 57.08	+1	303418..304689	+	423	104773509	murA	Ldb0355	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
253	 42.46	-1	304789..305040	+	83	104773510	rpmE2	Ldb0356	-	50S ribosomal protein L31 type B
254	 55.56	0	305148..306515	+	455	104773511	murF	Ldb0357	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase
255	 57.71	+1	306525..307976	+	483	104773512	-	Ldb0358	-	DEAD-box ATP dependent DNA helicase
256	 57.00	+1	308061..308474	+	137	104773513	acpS	Ldb0359	-	Holo-[acyl-carrier protein] synthase
257	 57.56	+1	308471..309601	+	376	104773514	alr	Ldb0360	-	alanine racemase
258	 53.22	0	309655..310353	-	232	104773515	-	Ldb0361	-	hypothetical protein
259	 54.30	0	310577..311134	+	185	104773516	pth	Ldb0362	-	peptidyl-tRNA hydrolase
260	 56.43	+1	311151..314627	+	1158	104773517	mfd	Ldb0363	-	transcription-repair coupling factor
261	 53.09	0	314696..314938	+	80	104773518	-	Ldb0364	-	putative ribosome-associated heat shock protein
262	 54.86	0	315004..315384	+	126	104773519	-	Ldb0365	-	hypothetical protein
263	 58.47	+1	315384..315737	+	117	104773520	-	Ldb0366	-	putative RNA-binding protein
264	 55.63	0	315784..317079	+	431	104773521	-	Ldb0367	-	hypothetical protein
265	 54.70	0	317150..319363	+	737	104773522	ftsH	Ldb0368	-	cell division protein FtsH
266	 54.65	0	319408..320289	+	293	104773523	hslO	Ldb0369	-	chaperonin HSP33
267	 53.63	0	320743..322368	+	541	104773524	-	Ldb0370	-	peptide binding protein
268	 54.39	0	322378..323664	+	428	104773525	pepT2	Ldb0371	-	peptidase T
269	 55.85	0	323778..324812	+	344	104773526	-	Ldb0372	-	putative tRNA-dihydrouridine synthase
270	 53.45	0	324829..326334	+	501	104773527	lysS	Ldb0373	-	lysyl-tRNA synthetase
271	 54.81	0	326486..326890	+	134	104773528	-	Ldb0374	-	hypothetical protein
272	 53.97	0	326908..327663	+	251	104773529	-	Ldb0375	-	hypothetical protein
273	 53.37	0	329764..330372	-	202	104773530	-	Ldb0378	-	hypothetical protein
274	 54.55	0	330996..331457	+	153	104773531	-	Ldb0382	-	hypothetical protein
275	 56.26	+1	331481..333940	+	819	104773532	clpC	Ldb0383	-	ATP-dependent Clp protease, ATP-binding subunit
276	 51.32	0	333965..334153	+	62	104773533	-	Ldb0384	-	hypothetical protein
277	 59.12	+1	334150..334308	+	52	104773534	-	Ldb0385	-	hypothetical protein
278	 53.96	0	334519..338184	+	1221	104773535	rpoB	Ldb0386	-	DNA-directed RNA polymerase subunit beta
279	 53.14	0	338200..341865	+	1221	104773536	rpoC	Ldb0387	-	DNA-directed RNA polymerase subunit beta'
280	 48.13	0	341933..342493	-	186	104773537	-	Ldb0388	-	hypothetical protein
281	 49.26	0	343209..343616	+	135	104773538	rpsL	Ldb0392	-	30S ribosomal protein S12
282	 45.44	-1	343632..344102	+	156	104773539	rpsG	Ldb0393	-	30S ribosomal protein S7
283	 49.11	0	344136..346220	+	694	104773540	fusA	Ldb0394	-	elongation factor G
284	 45.95	0	346607..346915	+	102	104773541	rpsJ	Ldb0395	-	30S ribosomal protein S10
285	 45.08	-1	346941..347570	+	209	104773542	rplC	Ldb0396	-	50S ribosomal protein L3
286	 48.06	0	347585..348202	+	205	104773543	rplD	Ldb0397	-	50S ribosomal protein L4
287	 44.78	-1	348202..348498	+	98	104773544	rplW	Ldb0398	-	50S ribosomal protein L23
288	 47.67	0	348524..349360	+	278	104773545	rplB	Ldb0399	-	50S ribosomal protein L2
289	 46.74	0	349378..349653	+	91	104773546	rpsS	Ldb0400	-	30S ribosomal protein S19
290	 43.79	-1	349675..350028	+	117	104773547	rplV	Ldb0401	-	50S ribosomal protein L22
291	 47.77	0	350042..350713	+	223	104773548	rpsC	Ldb0402	-	30S ribosomal protein S3
292	 48.42	0	350713..351156	+	147	104773549	rplP	Ldb0403	-	50S ribosomal protein L16
293	 39.39	-2	351146..351343	+	65	104773550	rpmC	Ldb0404	-	50S ribosomal protein L29
294	 42.32	-1	351362..351628	+	88	104773551	rpsQ	Ldb0405	-	30S ribosomal protein S17
295	 48.24	0	351659..352027	+	122	104773552	rplN	Ldb0406	-	50S ribosomal protein L14
296	 44.17	-1	352044..352283	+	79	104773553	rplX	Ldb0407	-	50S ribosomal protein L24
297	 44.38	-1	352303..352845	+	180	104773554	rplE	Ldb0408	-	50S ribosomal protein L5
298	 46.77	0	352860..353045	+	61	104773555	rpsN	Ldb0409	-	30S ribosomal protein S14
299	 43.86	-1	353068..353466	+	132	104773556	rpsH	Ldb0410	-	30S ribosomal protein S8
300	 46.33	0	353491..354021	+	176	104773557	rplF	Ldb0411	-	50S ribosomal protein L6
301	 47.50	0	354048..354407	+	119	104773558	rplR	Ldb0412	-	50S ribosomal protein L18
302	 47.95	0	354424..354936	+	170	104773559	rpsE	Ldb0413	-	30S ribosomal protein S5
303	 39.78	-2	354948..355133	+	61	104773560	rpmD	Ldb0414	-	50S ribosomal protein L30
304	 47.39	0	355154..355594	+	146	104773561	rplO	Ldb0415	-	50S ribosomal protein L15
305	 44.83	-1	355594..356889	+	431	104773562	secY	Ldb0416	-	preprotein translocase subunit SecY
306	 46.33	0	356900..357553	+	217	104773563	adk	Ldb0417	-	adenylate kinase
307	 41.89	-1	357629..357850	+	73	104773564	infA	Ldb0418	-	translation initiation factor IF-1
308	 41.88	-1	357865..357981	+	38	104773565	rpmJ	Ldb0419	-	50S ribosomal protein L36
309	 45.87	0	358007..358357	+	116	104773566	rpsM	Ldb0420	-	30S ribosomal protein S13
310	 48.46	0	358386..358775	+	129	104773567	rpsK	Ldb0421	-	30S ribosomal protein S11
311	 46.96	0	358819..359757	+	312	104773568	rpoA	Ldb0422	-	DNA-directed RNA polymerase subunit alpha
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.