IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
171	 45.24	-1	209229..209312	+	27	104773428	-	Ldb0241	-	hypothetical protein
172	 42.86	-1	209267..209350	+	27	104773429	-	Ldb0242	-	hypothetical protein
173	 32.79	-2	209936..210118	+	60	104773430	-	Ldb0245	-	hypothetical protein
174	 40.17	-2	210198..210548	+	116	104773431	folB	Ldb0246	-	dihydroneopterin aldolase
175	 41.06	-1	210545..211618	+	357	104773432	folKE	Ldb0247	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase / GTP cyclohydrolase I
176	 39.91	-2	211602..212939	+	445	104773433	folC2	Ldb0248	-	folylpolyglutamate synthase
177	 38.96	-2	212920..214020	+	366	104773434	folP	Ldb0249	-	dihydropteroate synthase
178	 44.51	-1	214032..214568	+	178	104773435	-	Ldb0250	-	hypothetical protein
179	 35.91	-2	215392..216051	+	219	104773436	-	Ldb0251	-	amino acid ABC transporter permease
180	 36.22	-2	216014..216706	+	230	104773437	-	Ldb0252	-	amino acid ABC transporter permease
181	 36.03	-2	216716..217456	+	246	104773438	-	Ldb0253	-	amino acid ABC transporter ATP-binding protein
182	 36.82	-2	217468..218328	+	286	104773439	-	Ldb0254	-	amino acid ABC transporter substrate-binding protein
183	 56.57	+1	218562..218759	+	65	104773440	-	Ldb0255	-	hypothetical protein
184	 55.06	0	219425..220690	+	421	104773441	tyrS	Ldb0256	-	tyrosyl-tRNA synthetase
185	 37.70	-2	222084..222449	+	121	104773442	-	Ldb0262	-	hypothetical protein
186	 38.80	-2	223501..224688	+	395	104773443	-	Ldb0265	-	aminoacylase
187	 33.81	-2	227158..228405	+	415	104773444	-	Ldb0271	-	hypothetical protein
188	 50.08	0	228505..229155	+	216	104773445	-	Ldb0272	-	HD family hydrolase
189	 49.23	0	231233..232861	+	542	104773446	oppA3II	Ldb0276	-	oligopeptide ABC transporter, substrate binding protein
190	 52.67	0	234845..236437	+	530	104773447	oppA1II	Ldb0281	-	oligopeptide ABC transporter, substrate binding protein
191	 49.51	0	236861..237781	+	306	104773448	oppBII	Ldb0282	-	oligopeptide ABC transporter, permease protein
192	 51.45	0	237803..238834	+	343	104773449	oppCII	Ldb0283	-	oligopeptide ABC transporter, permease protein
193	 50.38	0	238848..239891	+	347	104773450	oppDII	Ldb0284	-	oligopeptide ABC transporter, ATP-binding protein
194	 52.83	0	239906..240859	+	317	104773451	oppFII	Ldb0285	-	oligopeptide ABC transporter, ATP-binding protein
195	 53.96	0	241211..242524	-	437	104773452	pepG	Ldb0287	-	aminopeptidase G
196	 55.48	0	242576..243889	-	437	104773453	pepW	Ldb0288	-	aminopeptidase W
197	 49.53	0	243986..244411	-	141	104773454	-	Ldb0289	-	small heat shock protein
198	 55.84	0	244639..245100	+	153	104773455	greA	Ldb0290	-	transcription elongation factor GreA
199	 53.95	0	245184..246473	-	429	104773456	purA	Ldb0291	-	adenylosuccinate synthetase
200	 53.68	0	246659..247651	+	330	104773457	guaC	Ldb0292	-	guanosine 5'-monophosphate oxidoreductase
201	 54.97	0	247780..249087	+	435	104773458	-	Ldb0293	-	UmuC-like DNA-repair protein
202	 54.93	0	249065..249439	+	124	104773459	-	Ldb0294	-	hypothetical protein
203	 55.53	0	249509..250801	-	430	104773460	pbuX	Ldb0295	-	xanthine permease
204	 55.44	0	250831..251400	-	189	104773461	xpt	Ldb0296	-	xanthine phosphoribosyltransferase
205	 55.79	0	251755..252912	+	385	104773462	guaB	Ldb0297	-	inosine-5-monophosphate dehydrogenase
206	 53.80	0	252912..254465	+	517	104773463	guaA	Ldb0298	-	bifunctional GMP synthase/glutamine amidotransferase protein
207	 38.49	-2	254790..255041	+	83	104773464	-	Ldb0299	-	hypothetical protein
208	 47.85	0	255028..255399	+	123	104773465	-	Ldb0300	-	hypothetical protein
209	 32.45	-2	255833..258085	+	750	104773466	-	Ldb0301	-	hypothetical protein
210	 44.32	-1	258099..259709	+	536	104773467	-	Ldb0302	-	ABC transporter, ATP-binding/permease protein
211	 42.77	-1	259794..260588	-	264	104773468	-	Ldb0303	-	AraC family transcriptional regulator
212	 56.55	+1	261781..262383	+	200	104773469	-	Ldb0306	-	Pnp/Udp family phosphorylase
213	 52.10	0	262463..263725	-	420	104773470	-	Ldb0307	-	hypothetical protein
214	 54.76	0	263819..264784	-	321	104773471	-	Ldb0308	-	CRP family transcriptional regulator
215	 57.98	+1	266275..267207	+	310	104773472	mmuM	Ldb0311	-	homocysteine methyltransferase
216	 54.44	0	267263..267712	+	149	104773473	-	Ldb0312	-	hypothetical protein
217	 52.94	0	267948..268151	+	67	104773474	-	Ldb0313	-	hypothetical protein
218	 52.00	0	268210..268659	+	149	104773475	-	Ldb0314	-	MarR family transcriptional regulator
219	 56.87	+1	268674..269663	+	329	104773476	ansA	Ldb0315	-	asparaginase
220	 51.15	0	270702..271178	+	158	104773477	mscL	Ldb0318	-	large-conductance mechanosensitive channel
221	 53.67	0	271258..272781	-	507	104773478	pncB	Ldb0319	-	nicotinate phosphoribosyltransferase
222	 56.58	+1	273997..274551	-	184	104773479	pncA	Ldb0322	-	nicotinamidase
223	 54.43	0	274806..275663	+	285	104773480	-	Ldb0323	-	hypothetical protein
224	 54.31	0	275656..275922	-	88	104773481	-	Ldb0324	-	hypothetical protein
225	 55.98	+1	276018..276794	-	258	104773482	-	Ldb0325	-	NUDIX family hydrolase
226	 43.65	-1	276961..278259	+	432	104773483	-	Ldb0326	-	putative transposase
227	 45.49	-1	278529..278816	+	95	104773484	-	Ldb0327	-	hypothetical protein
228	 50.40	0	279004..279255	+	83	104773485	-	Ldb0328	-	hypothetical protein
229	 35.59	-2	279389..280009	-	206	104773486	-	Ldb0329	-	hypothetical protein
230	 39.70	-2	280011..280811	-	266	104773487	-	Ldb0330	-	ABC transporter, permease protein
231	 41.07	-1	280808..281518	-	236	104773488	-	Ldb0331	-	ABC transporter, ATP-binding protein
232	 36.59	-2	281643..281888	+	81	104773489	-	Ldb0332	-	hypothetical protein
233	 32.63	-2	281910..282194	+	94	104773490	-	Ldb0333	-	hypothetical protein
234	 52.62	0	283792..284460	+	222	104773491	-	Ldb0336	-	hypothetical protein
235	 53.80	0	284781..285806	+	341	104773492	trpS	Ldb0338	-	tryptophanyl-tRNA synthetase II
236	 53.42	0	285808..286290	+	160	104773493	-	Ldb0339	-	putative dCMP deaminase
237	 51.87	0	286163..286885	+	240	104773494	-	Ldb0340	-	hypothetical protein
238	 54.14	0	287244..289934	+	896	104773495	-	Ldb0341	-	cation transporting P-type ATPase ( Mg2+ transporter)
239	 53.30	0	290070..292052	+	660	104773496	metS	Ldb0342	-	methionyl-tRNA synthetase
240	 53.21	0	292052..292831	+	259	104773497	-	Ldb0343	-	TatD family deoxyribonuclease
241	 53.93	0	292815..293387	+	190	104773498	-	Ldb0344	-	hypothetical protein
242	 56.45	+1	293362..294252	+	296	104773499	ksgA	Ldb0345	-	dimethyladenosine transferase
243	 46.43	0	294312..294563	+	83	104773500	-	Ldb0346	-	hypothetical protein
244	 54.03	0	294669..295499	+	276	104773501	purR	Ldb0347	-	purine operon repressor
245	 53.54	0	295561..296946	+	461	104773502	gcaD	Ldb0348	-	UDP-N-acetylglucosamine pyrophosphorylase
246	 46.21	0	297116..297814	+	232	104773503	-	Ldb0349	-	hypothetical protein
247	 53.62	0	298044..299024	+	326	104773504	prs1	Ldb0350	-	ribose-phosphate pyrophosphokinase
248	 55.78	0	299096..300409	-	437	104773505	-	Ldb0351	-	HD superfamily phosphohydrolase
249	 49.12	0	300549..300947	+	132	104773506	-	Ldb0352	-	hypothetical protein
250	 50.53	0	300993..301562	+	189	104773507	rpoE	Ldb0353	-	DNA-directed RNA polymerase subunit delta
251	 53.33	0	301679..303298	+	539	104773508	pyrG	Ldb0354	-	CTP synthetase
252	 57.08	+1	303418..304689	+	423	104773509	murA	Ldb0355	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
253	 42.46	-1	304789..305040	+	83	104773510	rpmE2	Ldb0356	-	50S ribosomal protein L31 type B
254	 55.56	0	305148..306515	+	455	104773511	murF	Ldb0357	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase
255	 57.71	+1	306525..307976	+	483	104773512	-	Ldb0358	-	DEAD-box ATP dependent DNA helicase
256	 57.00	+1	308061..308474	+	137	104773513	acpS	Ldb0359	-	Holo-[acyl-carrier protein] synthase
257	 57.56	+1	308471..309601	+	376	104773514	alr	Ldb0360	-	alanine racemase
258	 53.22	0	309655..310353	-	232	104773515	-	Ldb0361	-	hypothetical protein
259	 54.30	0	310577..311134	+	185	104773516	pth	Ldb0362	-	peptidyl-tRNA hydrolase
260	 56.43	+1	311151..314627	+	1158	104773517	mfd	Ldb0363	-	transcription-repair coupling factor
261	 53.09	0	314696..314938	+	80	104773518	-	Ldb0364	-	putative ribosome-associated heat shock protein
262	 54.86	0	315004..315384	+	126	104773519	-	Ldb0365	-	hypothetical protein
263	 58.47	+1	315384..315737	+	117	104773520	-	Ldb0366	-	putative RNA-binding protein
264	 55.63	0	315784..317079	+	431	104773521	-	Ldb0367	-	hypothetical protein
265	 54.70	0	317150..319363	+	737	104773522	ftsH	Ldb0368	-	cell division protein FtsH
266	 54.65	0	319408..320289	+	293	104773523	hslO	Ldb0369	-	chaperonin HSP33
267	 53.63	0	320743..322368	+	541	104773524	-	Ldb0370	-	peptide binding protein
268	 54.39	0	322378..323664	+	428	104773525	pepT2	Ldb0371	-	peptidase T
269	 55.85	0	323778..324812	+	344	104773526	-	Ldb0372	-	putative tRNA-dihydrouridine synthase
270	 53.45	0	324829..326334	+	501	104773527	lysS	Ldb0373	-	lysyl-tRNA synthetase
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.