IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1463	 54.96	0	1734709..1735212	-	167	104774720	-	Ldb2071	-	TetR family transcriptional regulator
1464	 55.28	0	1736895..1737632	-	245	104774721	-	Ldb2075	-	hypothetical protein
1465	 54.25	0	1737697..1738332	+	211	104774722	-	Ldb2076	-	hypothetical protein
1466	 54.74	0	1738426..1739616	+	396	104774723	-	Ldb2077	-	hypothetical protein
1467	 52.53	0	1740264..1742795	-	843	104774724	pepN	Ldb2080	-	aminopeptidase N
1468	 50.19	0	1743204..1744010	+	268	104774725	-	Ldb2081	-	hypothetical protein
1469	 53.80	0	1744181..1745128	+	315	104774726	-	Ldb2082	-	DeoR family transcriptional regulator
1470	 55.18	0	1747115..1748533	-	472	104774727	citT	Ldb2085	-	2-oxoglutarate/malate translocator
1471	 50.43	0	1748558..1749961	-	467	104774728	fumC	Ldb2086	-	fumarate hydratase
1472	 50.83	0	1750406..1750645	-	79	104774729	-	Ldb2087	-	hypothetical protein
1473	 55.13	0	1750642..1750953	-	103	104774730	-	Ldb2088	-	hypothetical protein
1474	 56.32	+1	1751043..1751129	-	28	104774731	-	Ldb2089	-	hypothetical protein
1475	 55.01	0	1751403..1752311	+	302	104774732	-	Ldb2090	-	hypothetical protein
1476	 48.33	0	1752376..1752615	-	79	104774733	-	Ldb2091	-	hypothetical protein
1477	 58.68	+1	1752712..1753212	-	166	104774734	-	Ldb2092	-	hypothetical protein
1478	 53.63	0	1753212..1754024	-	270	104774735	-	Ldb2093	-	putative protein tyrosine/serine phosphatase
1479	 37.63	-2	1754106..1755686	-	526	104774736	-	Ldb2094	-	ABC transporter, ATP-binding/permease protein
1480	 34.29	-2	1755673..1757868	-	731	104774737	-	Ldb2095	-	hypothetical protein
1481	 57.05	+1	1758193..1758951	-	252	104774738	-	Ldb2096	-	putative protein tyrosine/serine phosphatase
1482	 54.71	0	1760532..1761200	+	222	104774739	-	Ldb2100	-	putative glutamine amidotransferase
1483	 49.79	0	1761394..1761630	+	78	104774740	-	Ldb2101	-	hypothetical protein
1484	 55.14	0	1761754..1763844	+	696	104774741	clpL	Ldb2102	-	ATP-dependent Clp protease, ATP-binding subunit
1485	 42.45	-1	1770654..1771739	-	361	104774742	carA1	Ldb2110	-	carbamoyl phosphate synthase small subunit
1486	 40.61	-1	1771739..1773016	-	425	104774743	pyrC	Ldb2111	-	dihydroorotase
1487	 39.60	-2	1773016..1773972	-	318	104774744	pyrB	Ldb2112	-	aspartate carbamoyltransferase catalytic subunit
1488	 40.33	-1	1774117..1774659	-	180	104774745	pyrR1	Ldb2113	-	pyrimidine regulatory protein PyrR
1489	 41.45	-1	1774819..1775742	-	307	104774746	pyrD1	Ldb2114	-	dihydroorotate dehydrogenase 1B
1490	 36.87	-2	1777087..1777284	+	65	104774747	cspA	Ldb2117	-	cold shock protein A
1491	 56.80	+1	1778574..1779485	-	303	104774748	-	Ldb2119	-	putative permease
1492	 56.80	+1	1779639..1780388	-	249	104774749	-	Ldb2120	-	putative glutamine amidotransferase
1493	 54.65	0	1780393..1781199	-	268	104774750	-	Ldb2121	-	HAD superfamily hydrolase
1494	 49.55	0	1781264..1782151	-	295	104774751	-	Ldb2122	-	hypothetical protein
1495	 53.99	0	1782135..1783451	-	438	104774752	-	Ldb2123	-	PTS system, enzyme IIC component (putative cellobiose-specific)
1496	 55.18	0	1796718..1797344	-	208	104774753	-	Ldb2141	-	TetR family transcriptional regulator
1497	 54.30	0	1797348..1799345	-	665	104774754	-	Ldb2142	-	ABC transporter, ATP-binding/permease protein
1498	 51.54	0	1799482..1799871	-	129	104774755	-	Ldb2143	-	hypothetical protein
1499	 45.10	-1	1800031..1800081	+	16	104774756	-	Ldb2144	-	hypothetical protein
1500	 54.08	0	1800430..1801716	-	428	104774757	dltD	Ldb2145	-	D-alanyl transfer protein DltD
1501	 46.09	0	1801706..1801948	-	80	104774758	dltC	Ldb2146	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1502	 53.53	0	1802030..1803262	-	410	104774759	dltB	Ldb2147	-	D-alanyl transfer protein DltB
1503	 54.56	0	1803259..1804761	-	500	104774760	dltA	Ldb2148	-	D-alanine--D-alanyl carrier protein ligase
1504	 40.67	-1	1804777..1804926	-	49	104774761	-	Ldb2149	-	hypothetical protein
1505	 55.78	0	1805122..1805424	-	100	104774762	-	Ldb2150	-	hypothetical protein
1506	 55.33	0	1805461..1806669	-	402	104774763	-	Ldb2151	-	hypothetical protein
1507	 43.95	-1	1807589..1808812	-	407	104774764	-	Ldb2153	-	transposase
1508	 45.24	-1	1808923..1809006	+	27	104774765	-	Ldb2154	-	hypothetical protein
1509	 42.86	-1	1808961..1809044	+	27	104774766	-	Ldb2155	-	hypothetical protein
1510	 50.40	0	1809808..1810305	+	165	104774767	-	Ldb2157	-	hypothetical protein
1511	 55.76	0	1810438..1812252	+	604	104774768	-	Ldb2158	-	cation transporting P-type ATPase ( metal transporter)
1512	 54.09	0	1812414..1813574	+	386	104774769	-	Ldb2159	-	Na(+)/H(+) antiporter
1513	 53.42	0	1813668..1814324	-	218	104774770	-	Ldb2160	-	hypothetical protein
1514	 56.04	+1	1814417..1815517	+	366	104774771	-	Ldb2161	-	hypothetical protein
1515	 54.98	0	1815723..1816817	+	364	104774772	-	Ldb2162	-	putative lipoprotein
1516	 48.58	0	1816737..1817300	-	187	104774773	-	Ldb2163	-	hypothetical protein
1517	 46.72	0	1817343..1817753	-	136	104774774	-	Ldb2164	-	hypothetical protein
1518	 43.27	-1	1819022..1819192	+	56	104774775	-	Ldb2167	-	hypothetical protein
1519	 43.63	-1	1819211..1819414	+	67	104774776	-	Ldb2168	-	hypothetical protein
1520	 40.96	-1	1819422..1819919	+	165	104774777	-	Ldb2169	-	hypothetical protein
1521	 49.82	0	1820226..1821323	+	365	104774778	-	Ldb2170	-	putative lipoprotein
1522	 39.93	-2	1821436..1822011	+	191	104774779	-	Ldb2171	-	hypothetical protein
1523	 43.11	-1	1822923..1823147	-	74	104774780	-	Ldb2174	-	hypothetical protein
1524	 37.67	-2	1825346..1826176	+	276	104774781	potB2	Ldb2178	-	spermidine/putrescine ABC transporter permease
1525	 37.01	-2	1826169..1826957	+	262	104774782	potC2	Ldb2179	-	spermidine/putrescine ABC transporter permease
1526	 37.78	-2	1826967..1828001	+	344	104774783	potA2	Ldb2180	-	spermidine/putrescine ABC transporter ATP-binding protein
1527	 39.27	-2	1828034..1829095	+	353	104774784	potD2	Ldb2181	-	spermidine/putrescine ABC transporter substrate-binding protein
1528	 38.10	-2	1829157..1830854	+	565	104774785	adeC	Ldb2182	-	adenine deaminase
1529	 52.21	0	1831449..1832534	+	361	104774786	-	Ldb2183	-	putative lipoprotein
1530	 54.43	0	1832622..1834166	+	514	104774787	-	Ldb2184	-	ABC transporter, ATP-binding protein
1531	 56.32	+1	1834159..1835298	+	379	104774788	-	Ldb2185	-	ABC transporter, permease protein
1532	 54.55	0	1835298..1836254	+	318	104774789	-	Ldb2186	-	ABC transporter, permease protein
1533	 56.06	+1	1836490..1836687	+	65	104774790	-	Ldb2187	-	hypothetical protein
1534	 57.26	+1	1836728..1837099	-	123	104774791	-	Ldb2188	-	hypothetical protein
1535	 56.23	+1	1837192..1838034	-	280	104774792	-	Ldb2189	-	aldo/keto reductase family oxidoreductase
1536	 53.19	0	1838234..1838938	+	234	104774793	nagB	Ldb2190	-	glucosamine-6-phosphate deaminase
1537	 41.90	-1	1839090..1839194	+	34	104774794	-	Ldb2191	-	hypothetical protein
1538	 39.29	-2	1839470..1839721	-	83	104774795	-	Ldb2193	-	hypothetical protein
1539	 40.14	-2	1840362..1841330	-	322	104774796	-	Ldb2194	-	hypothetical protein
1540	 48.63	0	1841320..1841574	-	84	104774797	-	Ldb2195	-	hypothetical protein
1541	 50.08	0	1841771..1842433	+	220	104774798	dak	Ldb2196	-	deoxyadenosine kinase
1542	 52.22	0	1842451..1843149	+	232	104774799	dgk	Ldb2197	-	deoxyguanosine kinase
1543	 53.73	0	1843441..1844901	+	486	104774800	-	Ldb2198	-	glutamine ABC transporter, substrate binding / permease protein
1544	 54.62	0	1844921..1845667	+	248	104774801	-	Ldb2199	-	glutamine ABC transporter, ATP-binding protein
1545	 54.23	0	1845886..1847196	+	436	104774802	-	Ldb2200	-	permease
1546	 56.27	+1	1847273..1848811	-	512	104774803	-	Ldb2201	-	putative chloride channel protein
1547	 46.33	0	1848881..1849357	-	158	104774804	-	Ldb2202	-	hypothetical protein
1548	 51.13	0	1849887..1850459	+	190	104774805	-	Ldb2204	-	hypothetical protein
1549	 42.44	-1	1850632..1851180	-	182	104774806	-	Ldb2205	-	hypothetical protein
1550	 45.89	0	1851629..1852297	+	222	104774807	-	Ldb2206	-	hypothetical protein
1551	 50.69	0	1852434..1853009	+	191	104774808	-	Ldb2207	-	hypothetical protein
1552	 44.92	-1	1853020..1853649	+	209	104774809	-	Ldb2208	-	ABC transporter, ATP-binding protein
1553	 45.69	0	1853639..1854148	+	169	104774810	-	Ldb2209	-	hypothetical protein
1554	 42.61	-1	1854145..1854942	+	265	104774811	-	Ldb2210	-	hypothetical protein
1555	 38.65	-2	1855698..1856111	+	137	104774812	-	Ldb2211	-	hypothetical protein
1556	 53.17	0	1856366..1857751	-	461	104774813	gnd	Ldb2212	-	6-phosphogluconate dehydrogenase
1557	 49.22	0	1857850..1859700	-	616	104774814	pox1	Ldb2213	-	pyruvate oxidase
1558	 57.59	+1	1860007..1861902	-	631	104774815	gidA	Ldb2214	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1559	 57.65	+1	1861929..1863314	-	461	104774816	trmE	Ldb2215	-	tRNA modification GTPase TrmE
1560	 54.71	0	1863422..1864291	-	289	104774817	-	Ldb2216	-	hypothetical protein
1561	 50.27	0	1864291..1864656	-	121	104774818	rnpA	Ldb2217	-	ribonuclease P
1562	 47.52	0	1864705..1864845	-	46	104774819	rpmH	Ldb2218	-	50S ribosomal protein L34
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.