IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1409	 47.03	0	1678389..1679162	-	257	104774666	epsIC	Ldb2009	-	hypothetical protein
1410	 46.07	0	1679172..1680011	-	279	104774667	epsIB	Ldb2010	-	hypothetical protein
1411	 49.22	0	1680011..1681042	-	343	104774668	epsIA	Ldb2011	-	eps operon transcriptional regulator EpsIA
1412	 55.97	+1	1681368..1682648	+	426	104774669	-	Ldb2012	-	putative GTP-binding protein
1413	 52.82	0	1682697..1683476	-	259	104774670	-	Ldb2013	-	hypothetical protein
1414	 54.67	0	1684378..1685127	-	249	104774671	-	Ldb2015	-	hypothetical protein
1415	 54.22	0	1686583..1687056	-	157	104774672	-	Ldb2020	-	hypothetical protein
1416	 52.91	0	1687227..1688273	-	348	104774673	-	Ldb2021	-	D-isomer specific 2-hydroxyacid dehydrogenase
1417	 52.88	0	1688557..1689042	-	161	104774674	-	Ldb2022	-	hypothetical protein
1418	 51.57	0	1689167..1689709	-	180	104774675	gmk2	Ldb2023	-	guanylate kinase
1419	 52.08	0	1689816..1690151	+	111	104774676	-	Ldb2024	-	hypothetical protein
1420	 54.06	0	1690215..1691753	+	512	104774677	-	Ldb2025	-	hypothetical protein
1421	 54.55	0	1691809..1692435	-	208	104774678	-	Ldb2026	-	hypothetical protein
1422	 52.13	0	1692438..1692953	-	171	104774679	-	Ldb2027	-	hypothetical protein
1423	 55.08	0	1693541..1694032	-	163	104774680	-	Ldb2028	-	hypothetical protein
1424	 56.83	+1	1694035..1694766	-	243	104774681	-	Ldb2029	-	hypothetical protein
1425	 53.20	0	1694844..1696388	-	514	104774682	-	Ldb2030	-	ABC transporter, ATP-binding protein
1426	 54.50	0	1696403..1696780	-	125	104774683	-	Ldb2031	-	hypothetical protein
1427	 54.77	0	1696899..1698041	-	380	104774684	-	Ldb2032	-	LytR family transcriptional regulator
1428	 43.49	-1	1698382..1699680	+	432	104774685	-	Ldb2033	-	putative transposase
1429	 56.13	+1	1700003..1701805	+	600	104774686	pepF	Ldb2034	-	oligoendopeptidase F
1430	 51.35	0	1702774..1703328	-	184	104774687	-	Ldb2036	-	hypothetical protein
1431	 55.76	0	1703465..1704262	-	265	104774688	-	Ldb2037	-	ABC transporter, permease protein
1432	 52.45	0	1704262..1704915	-	217	104774689	-	Ldb2038	-	ABC transporter, ATP-binding protein
1433	 55.31	0	1704941..1705741	-	266	104774690	-	Ldb2039	-	HAD superfamily hydrolase
1434	 53.63	0	1706007..1707977	-	656	104774691	-	Ldb2040	-	PTS system, fructose-specific enzyme IIABC component
1435	 56.07	+1	1708026..1708940	-	304	104774692	fruK	Ldb2041	-	1-phosphofructokinase
1436	 56.27	+1	1708940..1709689	-	249	104774693	fruR	Ldb2042	-	fructose repressor
1437	 54.80	0	1709851..1710600	-	249	104774694	racD	Ldb2043	-	aspartate racemase
1438	 56.54	+1	1710614..1712164	-	516	104774695	murE	Ldb2044	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1439	 54.26	0	1712201..1713409	-	402	104774696	-	Ldb2045	-	two-component system, sensor histidine kinase
1440	 52.84	0	1713399..1714085	-	228	104774697	-	Ldb2046	-	two-component system, response regulator
1441	 55.46	0	1714214..1716025	-	603	104774698	-	Ldb2047	-	ABC transporter, ATP-binding/permease protein
1442	 56.68	+1	1717932..1718702	-	256	104774699	-	Ldb2050	-	hypothetical protein
1443	 55.31	0	1718717..1719817	-	366	104774700	-	Ldb2051	-	translation-associated GTPase
1444	 52.65	0	1719894..1720157	-	87	104774701	-	Ldb2052	-	hypothetical protein
1445	 55.78	0	1720150..1721040	-	296	104774702	parB1	Ldb2053	-	chromosome partitioning protein ParB
1446	 54.87	0	1721018..1721797	-	259	104774703	parA	Ldb2054	-	chromosome partitioning protein ParA
1447	 54.79	0	1721799..1722623	-	274	104774704	parB2	Ldb2055	-	chromosome partitioning protein ParB
1448	 55.42	0	1722642..1723361	-	239	104774705	gidB	Ldb2056	-	glucose-inhibited division protein B
1449	 56.19	+1	1723525..1724049	+	174	104774706	-	Ldb2057	-	hypothetical protein
1450	 57.71	+1	1724095..1725054	-	319	104774707	apbE	Ldb2058	-	thiamine biosynthesis protein ApbE
1451	 56.70	+1	1725066..1725848	-	260	104774708	-	Ldb2059	-	putative protein tyrosine/serine phosphatase
1452	 54.10	0	1726001..1726549	-	182	104774709	-	Ldb2060	-	putative oxidoreductase
1453	 51.85	0	1726566..1727105	-	179	104774710	-	Ldb2061	-	putative oxidoreductase
1454	 53.05	0	1727233..1727790	-	185	104774711	-	Ldb2062	-	TetR family transcriptional regulator
1455	 55.46	0	1728056..1729456	+	466	104774712	pepD2	Ldb2063	-	dipeptidase
1456	 45.78	0	1729633..1729857	+	74	104774713	-	Ldb2064	-	hypothetical protein
1457	 53.41	0	1729915..1730412	-	165	104774714	-	Ldb2065	-	PTS system, glucose/glucoside-specific enzyme IIA component
1458	 45.02	-1	1730527..1730817	-	96	104774715	-	Ldb2066	-	hypothetical protein
1459	 49.62	0	1731208..1731600	-	130	104774716	-	Ldb2067	-	FMN-binding protein
1460	 48.98	0	1731692..1732618	+	308	104774717	-	Ldb2068	-	DeoR family transcriptional regulator
1461	 54.59	0	1732932..1733618	-	228	104774718	-	Ldb2069	-	ABC transporter, ATP-binding protein
1462	 51.37	0	1733608..1734666	-	352	104774719	-	Ldb2070	-	ABC transporter, permease protein
1463	 54.96	0	1734709..1735212	-	167	104774720	-	Ldb2071	-	TetR family transcriptional regulator
1464	 55.28	0	1736895..1737632	-	245	104774721	-	Ldb2075	-	hypothetical protein
1465	 54.25	0	1737697..1738332	+	211	104774722	-	Ldb2076	-	hypothetical protein
1466	 54.74	0	1738426..1739616	+	396	104774723	-	Ldb2077	-	hypothetical protein
1467	 52.53	0	1740264..1742795	-	843	104774724	pepN	Ldb2080	-	aminopeptidase N
1468	 50.19	0	1743204..1744010	+	268	104774725	-	Ldb2081	-	hypothetical protein
1469	 53.80	0	1744181..1745128	+	315	104774726	-	Ldb2082	-	DeoR family transcriptional regulator
1470	 55.18	0	1747115..1748533	-	472	104774727	citT	Ldb2085	-	2-oxoglutarate/malate translocator
1471	 50.43	0	1748558..1749961	-	467	104774728	fumC	Ldb2086	-	fumarate hydratase
1472	 50.83	0	1750406..1750645	-	79	104774729	-	Ldb2087	-	hypothetical protein
1473	 55.13	0	1750642..1750953	-	103	104774730	-	Ldb2088	-	hypothetical protein
1474	 56.32	+1	1751043..1751129	-	28	104774731	-	Ldb2089	-	hypothetical protein
1475	 55.01	0	1751403..1752311	+	302	104774732	-	Ldb2090	-	hypothetical protein
1476	 48.33	0	1752376..1752615	-	79	104774733	-	Ldb2091	-	hypothetical protein
1477	 58.68	+1	1752712..1753212	-	166	104774734	-	Ldb2092	-	hypothetical protein
1478	 53.63	0	1753212..1754024	-	270	104774735	-	Ldb2093	-	putative protein tyrosine/serine phosphatase
1479	 37.63	-2	1754106..1755686	-	526	104774736	-	Ldb2094	-	ABC transporter, ATP-binding/permease protein
1480	 34.29	-2	1755673..1757868	-	731	104774737	-	Ldb2095	-	hypothetical protein
1481	 57.05	+1	1758193..1758951	-	252	104774738	-	Ldb2096	-	putative protein tyrosine/serine phosphatase
1482	 54.71	0	1760532..1761200	+	222	104774739	-	Ldb2100	-	putative glutamine amidotransferase
1483	 49.79	0	1761394..1761630	+	78	104774740	-	Ldb2101	-	hypothetical protein
1484	 55.14	0	1761754..1763844	+	696	104774741	clpL	Ldb2102	-	ATP-dependent Clp protease, ATP-binding subunit
1485	 42.45	-1	1770654..1771739	-	361	104774742	carA1	Ldb2110	-	carbamoyl phosphate synthase small subunit
1486	 40.61	-1	1771739..1773016	-	425	104774743	pyrC	Ldb2111	-	dihydroorotase
1487	 39.60	-2	1773016..1773972	-	318	104774744	pyrB	Ldb2112	-	aspartate carbamoyltransferase catalytic subunit
1488	 40.33	-1	1774117..1774659	-	180	104774745	pyrR1	Ldb2113	-	pyrimidine regulatory protein PyrR
1489	 41.45	-1	1774819..1775742	-	307	104774746	pyrD1	Ldb2114	-	dihydroorotate dehydrogenase 1B
1490	 36.87	-2	1777087..1777284	+	65	104774747	cspA	Ldb2117	-	cold shock protein A
1491	 56.80	+1	1778574..1779485	-	303	104774748	-	Ldb2119	-	putative permease
1492	 56.80	+1	1779639..1780388	-	249	104774749	-	Ldb2120	-	putative glutamine amidotransferase
1493	 54.65	0	1780393..1781199	-	268	104774750	-	Ldb2121	-	HAD superfamily hydrolase
1494	 49.55	0	1781264..1782151	-	295	104774751	-	Ldb2122	-	hypothetical protein
1495	 53.99	0	1782135..1783451	-	438	104774752	-	Ldb2123	-	PTS system, enzyme IIC component (putative cellobiose-specific)
1496	 55.18	0	1796718..1797344	-	208	104774753	-	Ldb2141	-	TetR family transcriptional regulator
1497	 54.30	0	1797348..1799345	-	665	104774754	-	Ldb2142	-	ABC transporter, ATP-binding/permease protein
1498	 51.54	0	1799482..1799871	-	129	104774755	-	Ldb2143	-	hypothetical protein
1499	 45.10	-1	1800031..1800081	+	16	104774756	-	Ldb2144	-	hypothetical protein
1500	 54.08	0	1800430..1801716	-	428	104774757	dltD	Ldb2145	-	D-alanyl transfer protein DltD
1501	 46.09	0	1801706..1801948	-	80	104774758	dltC	Ldb2146	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1502	 53.53	0	1802030..1803262	-	410	104774759	dltB	Ldb2147	-	D-alanyl transfer protein DltB
1503	 54.56	0	1803259..1804761	-	500	104774760	dltA	Ldb2148	-	D-alanine--D-alanyl carrier protein ligase
1504	 40.67	-1	1804777..1804926	-	49	104774761	-	Ldb2149	-	hypothetical protein
1505	 55.78	0	1805122..1805424	-	100	104774762	-	Ldb2150	-	hypothetical protein
1506	 55.33	0	1805461..1806669	-	402	104774763	-	Ldb2151	-	hypothetical protein
1507	 43.95	-1	1807589..1808812	-	407	104774764	-	Ldb2153	-	transposase
1508	 45.24	-1	1808923..1809006	+	27	104774765	-	Ldb2154	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.