IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1338	 45.64	0	1599849..1600295	+	148	104774595	-	Ldb1902	-	hypothetical protein
1339	 55.08	0	1601554..1603149	-	531	104774596	-	Ldb1906	-	ABC transporter, ATP-binding/permease protein
1340	 46.24	0	1603426..1604448	+	340	104774597	-	Ldb1907	-	transposase
1341	 54.03	0	1604587..1605654	+	355	104774598	-	Ldb1908	-	hypothetical protein
1342	 54.54	0	1605723..1606637	+	304	104774599	pepPN	Ldb1909	-	prolyl aminopeptidase
1343	 54.44	0	1606793..1607569	+	258	104774600	-	Ldb1910	-	hypothetical protein
1344	 52.15	0	1607625..1608182	-	185	104774601	efp2	Ldb1911	-	elongation factor P (EF-P)
1345	 52.79	0	1608236..1609150	-	304	104774602	coaA	Ldb1912	-	pantothenate kinase
1346	 56.49	+1	1609253..1609822	+	189	104774603	-	Ldb1913	-	putative lipase
1347	 52.48	0	1609960..1610403	+	147	104774604	-	Ldb1914	-	hypothetical protein
1348	 51.20	0	1610409..1611158	+	249	104774605	-	Ldb1915	-	hypothetical protein
1349	 53.73	0	1612353..1614632	-	759	104774606	-	Ldb1919	-	putative helicase
1350	 51.13	0	1614828..1615490	+	220	104774607	-	Ldb1920	-	hypothetical protein
1351	 52.75	0	1615505..1616158	+	217	104774608	-	Ldb1921	-	putative fructose-2,6-bisphosphatase
1352	 53.39	0	1616275..1616967	+	230	104774609	glpQ	Ldb1922	-	glycerophosphoryl diester phosphodiesterase
1353	 45.78	0	1617544..1618965	-	473	104774610	-	Ldb1925	-	hypothetical protein
1354	 48.21	0	1619108..1619275	-	55	104774611	-	Ldb1926	-	hypothetical protein
1355	 52.08	0	1619858..1620097	-	79	104774612	-	Ldb1928	-	hypothetical protein
1356	 52.12	0	1620645..1621352	-	235	104774613	-	Ldb1930	-	hypothetical protein
1357	 47.32	0	1621540..1621968	+	142	104774614	gtcA	Ldb1931	-	teichoic acid glycosylation protein
1358	 54.00	0	1622078..1622527	+	149	104774615	-	Ldb1932	-	hypothetical protein
1359	 45.32	-1	1622769..1623035	+	88	104774616	-	Ldb1933	-	hypothetical protein
1360	 43.63	-1	1623400..1624623	-	407	104774617	-	Ldb1934	-	transposase
1361	 45.24	-1	1624734..1624817	+	27	104774618	-	Ldb1935	-	hypothetical protein
1362	 41.67	-1	1624772..1624855	+	27	104774619	-	Ldb1936	-	hypothetical protein
1363	 46.45	0	1624895..1625359	-	154	104774620	tagD	Ldb1937	-	EpsIIN, glycerol-3-phosphate cytidylyltransferase
1364	 45.61	0	1625377..1626288	-	303	104774621	epsIIM	Ldb1938	-	hypothetical protein
1365	 47.77	0	1626309..1627742	-	477	104774622	epsIIL	Ldb1939	-	polysaccharide repeat-containing transporter
1366	 36.72	-2	1628711..1629919	-	402	104774623	epsIIJ	Ldb1942	-	hypothetical protein
1367	 34.65	-2	1629961..1630719	-	252	104774624	epsII-I	Ldb1943	-	EpsII-I, putative glycosyltransferase
1368	 38.61	-2	1630740..1631858	-	372	104774625	epsIIH	Ldb1944	-	EpsIIH, putative glycosyltransferase
1369	 40.40	-1	1631851..1632756	-	301	104774626	epsIIG	Ldb1945	-	EpsIIG, putative glycosyltransferase
1370	 49.82	0	1634136..1635251	-	371	104774627	glf1	Ldb1949	-	EpsIIE, UDP-galactopyranose mutase
1371	 49.42	0	1635272..1636048	-	258	104774628	epsIID	Ldb1950	-	EpsIID, putative glycosyltransferase
1372	 47.09	0	1636065..1636733	-	222	104774629	epsIIC	Ldb1951	-	EpsIIC, putative glycosyltransferase
1373	 50.45	0	1636923..1637705	-	260	104774630	epsIIB	Ldb1952	-	EpsIIB, putative glycosyltransferase
1374	 51.12	0	1637819..1638982	-	387	104774631	epsIIA	Ldb1953	-	eps operon transcriptional regulator EpsIIA
1375	 50.00	0	1640436..1640765	-	109	104774632	-	Ldb1956	-	hypothetical protein
1376	 57.93	+1	1640771..1641205	-	144	104774633	-	Ldb1957	-	hypothetical protein
1377	 55.00	0	1641309..1641668	-	119	104774634	-	Ldb1958	-	XRE family transcriptional regulator
1378	 54.24	0	1641805..1642818	-	337	104774635	gpsA2	Ldb1959	-	glycerol-3-phosphate dehydrogenase
1379	 44.37	-1	1644433..1645275	-	280	104774636	-	Ldb1963	-	hypothetical protein
1380	 47.31	0	1646804..1646989	+	61	104774637	-	Ldb1967	-	hypothetical protein
1381	 52.53	0	1647486..1648475	+	329	104774638	-	Ldb1968	-	ABC transporter, substrate-binding protein
1382	 56.10	+1	1649160..1649585	-	141	104774639	msrB	Ldb1971	-	methionine sulfoxide reductase B
1383	 53.03	0	1650453..1651427	-	324	104774640	rmlD	Ldb1974	-	dTDP-4-dehydrorhamnose reductase
1384	 46.58	0	1652086..1652961	-	291	104774641	-	Ldb1976	-	hypothetical protein
1385	 50.51	0	1652961..1653350	-	129	104774642	-	Ldb1977	-	hypothetical protein
1386	 52.73	0	1653328..1653492	-	54	104774643	-	Ldb1978	-	hypothetical protein
1387	 43.79	-1	1653730..1654953	-	407	104774644	-	Ldb1979	-	transposase
1388	 46.43	0	1655064..1655147	+	27	104774645	-	Ldb1980	-	hypothetical protein
1389	 42.86	-1	1655102..1655185	+	27	104774646	-	Ldb1981	-	hypothetical protein
1390	 41.06	-1	1655201..1655446	-	81	104774647	-	Ldb1982	-	hypothetical protein
1391	 51.69	0	1656725..1657612	+	295	104774648	-	Ldb1984	-	LysR family transcriptional regulator
1392	 33.96	-2	1657684..1661331	-	1215	104774649	-	Ldb1985	-	hypothetical protein
1393	 44.00	-1	1661731..1661955	-	74	104774650	-	Ldb1986	-	hypothetical protein
1394	 47.03	0	1661927..1663678	-	583	104774651	-	Ldb1987	-	putative transposase
1395	 39.66	-2	1663852..1664025	-	57	104774652	-	Ldb1988	-	hypothetical protein
1396	 33.77	-2	1664111..1665031	-	306	104774653	-	Ldb1989	-	hypothetical protein
1397	 32.99	-2	1665040..1665618	-	192	104774654	-	Ldb1990	-	hypothetical protein
1398	 32.69	-2	1665620..1666087	-	155	104774655	-	Ldb1991	-	hypothetical protein
1399	 45.36	-1	1666382..1666564	+	60	104774656	-	Ldb1993	-	hypothetical protein
1400	 37.12	-2	1668565..1669647	-	360	104774657	epsIM	Ldb1998	-	EpsIM, putative glycosyltransferase
1401	 40.04	-2	1670765..1672195	-	476	104774658	epsIK	Ldb2001	-	polysaccharide repeat-containing transporter
1402	 50.81	0	1672198..1673313	-	371	104774659	glf2	Ldb2002	-	EpsIJ, UDP-galactopyranose mutase
1403	 34.23	-2	1673535..1674989	-	484	104774660	epsI-I	Ldb2003	-	hypothetical protein
1404	 32.84	-2	1675025..1675828	-	267	104774661	epsIH	Ldb2004	-	EpsIH, putative glycosyltransferase
1405	 34.92	-2	1675885..1676388	-	167	104774662	epsIG	Ldb2005	-	EpsIG, putative glycosyltransferase
1406	 36.56	-2	1676397..1676861	-	154	104774663	epsIF	Ldb2006	-	hypothetical protein
1407	 48.03	0	1676919..1677578	-	219	104774664	epsIE	Ldb2007	-	EpsIE, putative glycosyltransferase
1408	 46.20	0	1677609..1678385	-	258	104774665	epsID	Ldb2008	-	hypothetical protein
1409	 47.03	0	1678389..1679162	-	257	104774666	epsIC	Ldb2009	-	hypothetical protein
1410	 46.07	0	1679172..1680011	-	279	104774667	epsIB	Ldb2010	-	hypothetical protein
1411	 49.22	0	1680011..1681042	-	343	104774668	epsIA	Ldb2011	-	eps operon transcriptional regulator EpsIA
1412	 55.97	+1	1681368..1682648	+	426	104774669	-	Ldb2012	-	putative GTP-binding protein
1413	 52.82	0	1682697..1683476	-	259	104774670	-	Ldb2013	-	hypothetical protein
1414	 54.67	0	1684378..1685127	-	249	104774671	-	Ldb2015	-	hypothetical protein
1415	 54.22	0	1686583..1687056	-	157	104774672	-	Ldb2020	-	hypothetical protein
1416	 52.91	0	1687227..1688273	-	348	104774673	-	Ldb2021	-	D-isomer specific 2-hydroxyacid dehydrogenase
1417	 52.88	0	1688557..1689042	-	161	104774674	-	Ldb2022	-	hypothetical protein
1418	 51.57	0	1689167..1689709	-	180	104774675	gmk2	Ldb2023	-	guanylate kinase
1419	 52.08	0	1689816..1690151	+	111	104774676	-	Ldb2024	-	hypothetical protein
1420	 54.06	0	1690215..1691753	+	512	104774677	-	Ldb2025	-	hypothetical protein
1421	 54.55	0	1691809..1692435	-	208	104774678	-	Ldb2026	-	hypothetical protein
1422	 52.13	0	1692438..1692953	-	171	104774679	-	Ldb2027	-	hypothetical protein
1423	 55.08	0	1693541..1694032	-	163	104774680	-	Ldb2028	-	hypothetical protein
1424	 56.83	+1	1694035..1694766	-	243	104774681	-	Ldb2029	-	hypothetical protein
1425	 53.20	0	1694844..1696388	-	514	104774682	-	Ldb2030	-	ABC transporter, ATP-binding protein
1426	 54.50	0	1696403..1696780	-	125	104774683	-	Ldb2031	-	hypothetical protein
1427	 54.77	0	1696899..1698041	-	380	104774684	-	Ldb2032	-	LytR family transcriptional regulator
1428	 43.49	-1	1698382..1699680	+	432	104774685	-	Ldb2033	-	putative transposase
1429	 56.13	+1	1700003..1701805	+	600	104774686	pepF	Ldb2034	-	oligoendopeptidase F
1430	 51.35	0	1702774..1703328	-	184	104774687	-	Ldb2036	-	hypothetical protein
1431	 55.76	0	1703465..1704262	-	265	104774688	-	Ldb2037	-	ABC transporter, permease protein
1432	 52.45	0	1704262..1704915	-	217	104774689	-	Ldb2038	-	ABC transporter, ATP-binding protein
1433	 55.31	0	1704941..1705741	-	266	104774690	-	Ldb2039	-	HAD superfamily hydrolase
1434	 53.63	0	1706007..1707977	-	656	104774691	-	Ldb2040	-	PTS system, fructose-specific enzyme IIABC component
1435	 56.07	+1	1708026..1708940	-	304	104774692	fruK	Ldb2041	-	1-phosphofructokinase
1436	 56.27	+1	1708940..1709689	-	249	104774693	fruR	Ldb2042	-	fructose repressor
1437	 54.80	0	1709851..1710600	-	249	104774694	racD	Ldb2043	-	aspartate racemase
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.