IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1297	 55.10	0	1548017..1548457	-	146	104774554	iscU	Ldb1818	-	NifU homolog involved in Fe-S cluster formation
1298	 55.06	0	1548444..1549658	-	404	104774555	sufS	Ldb1819	-	cysteine desulfurase / selenocysteine lyase
1299	 56.11	+1	1549639..1550775	-	378	104774556	sufD	Ldb1820	-	hypothetical protein
1300	 55.64	0	1550812..1551591	-	259	104774557	sufC	Ldb1821	-	ATP-binding protein involved in Fe/S cluster assembly
1301	 51.72	0	1551778..1552299	+	173	104774558	-	Ldb1822	-	putative acetyltransferase
1302	 54.22	0	1552473..1552970	-	165	104774559	-	Ldb1823	-	PTS system, glucose/glucoside-specific enzyme IIA component
1303	 53.49	0	1552967..1553467	-	166	104774560	-	Ldb1824	-	hypothetical protein
1304	 49.67	0	1554059..1554211	-	50	104774561	-	Ldb1827	-	hypothetical protein
1305	 44.64	-1	1554229..1554909	-	226	104774562	-	Ldb1828	-	ABC transporter, ATP-binding protein
1306	 41.59	-1	1554909..1556144	-	411	104774563	-	Ldb1829	-	hypothetical protein
1307	 40.25	-2	1556156..1556632	-	158	104774564	-	Ldb1830	-	hypothetical protein
1308	 37.94	-2	1556632..1557000	-	122	104774565	-	Ldb1831	-	hypothetical protein
1309	 51.08	0	1557166..1557627	-	153	104774566	smpB	Ldb1832	-	SsrA-binding protein
1310	 55.32	0	1557650..1560019	-	789	104774567	rnr	Ldb1833	-	exoribonuclease R
1311	 42.74	-1	1560086..1560319	-	77	104774568	secG	Ldb1834	-	preprotein translocase subunit SecG
1312	 52.39	0	1560374..1562446	-	690	104774569	-	Ldb1835	-	putative phosphoglycerol transferase
1313	 54.44	0	1562465..1563478	-	337	104774570	-	Ldb1836	-	hypothetical protein
1314	 55.46	0	1563471..1564505	-	344	104774571	-	Ldb1837	-	putative glycosyltransferase
1315	 54.70	0	1564513..1565682	-	389	104774572	-	Ldb1838	-	putative glycosyltransferase
1316	 42.86	-1	1571739..1571822	-	27	104774573	-	Ldb1872	-	hypothetical protein
1317	 45.24	-1	1571777..1571860	-	27	104774574	-	Ldb1873	-	hypothetical protein
1318	 43.95	-1	1571971..1573194	+	407	104774575	-	Ldb1874	-	transposase
1319	 52.71	0	1579097..1579963	-	288	104774576	-	Ldb1880	-	putative anti-sigma factor
1320	 52.66	0	1579977..1580540	-	187	104774577	-	Ldb1881	-	RNA polymerase ECF-subfamily sigma factor
1321	 52.22	0	1580698..1582005	-	435	104774578	serS	Ldb1882	-	seryl-tRNA synthetase
1322	 54.01	0	1582249..1582722	-	157	104774579	-	Ldb1883	-	putative acetyltransferase
1323	 52.69	0	1582743..1583336	-	197	104774580	-	Ldb1884	-	hypothetical protein
1324	 56.72	+1	1583543..1584346	+	267	104774581	-	Ldb1885	-	putative esterase
1325	 50.64	0	1584349..1585209	+	286	104774582	-	Ldb1886	-	XRE family transcriptional regulator
1326	 53.41	0	1585250..1585747	-	165	104774583	ndt2	Ldb1887	-	nucleoside deoxyribosyltransferase
1327	 55.80	0	1585756..1586427	-	223	104774584	-	Ldb1888	-	putative glutamine amidotransferase
1328	 52.71	0	1587959..1589047	-	362	104774585	-	Ldb1890	-	hypothetical protein
1329	 53.50	0	1589160..1592342	-	1060	104774586	-	Ldb1891	-	permease
1330	 54.62	0	1592386..1592958	-	190	104774587	-	Ldb1892	-	TetR family transcriptional regulator
1331	 41.87	-1	1593130..1593375	+	81	104774588	-	Ldb1893	-	hypothetical protein
1332	 52.68	0	1593414..1594328	-	304	104774589	-	Ldb1894	-	hypothetical protein
1333	 48.58	0	1594360..1595277	-	305	104774590	-	Ldb1895	-	putative cation transporter
1334	 56.31	+1	1595372..1596259	+	295	104774591	pepIP	Ldb1896	-	proline iminopeptidase
1335	 54.93	0	1596814..1597401	-	195	104774592	-	Ldb1898	-	hypothetical protein
1336	 54.02	0	1597920..1598765	-	281	104774593	-	Ldb1900	-	hypothetical protein
1337	 54.39	0	1598892..1599722	+	276	104774594	-	Ldb1901	-	2,5-didehydrogluconate reductase
1338	 45.64	0	1599849..1600295	+	148	104774595	-	Ldb1902	-	hypothetical protein
1339	 55.08	0	1601554..1603149	-	531	104774596	-	Ldb1906	-	ABC transporter, ATP-binding/permease protein
1340	 46.24	0	1603426..1604448	+	340	104774597	-	Ldb1907	-	transposase
1341	 54.03	0	1604587..1605654	+	355	104774598	-	Ldb1908	-	hypothetical protein
1342	 54.54	0	1605723..1606637	+	304	104774599	pepPN	Ldb1909	-	prolyl aminopeptidase
1343	 54.44	0	1606793..1607569	+	258	104774600	-	Ldb1910	-	hypothetical protein
1344	 52.15	0	1607625..1608182	-	185	104774601	efp2	Ldb1911	-	elongation factor P (EF-P)
1345	 52.79	0	1608236..1609150	-	304	104774602	coaA	Ldb1912	-	pantothenate kinase
1346	 56.49	+1	1609253..1609822	+	189	104774603	-	Ldb1913	-	putative lipase
1347	 52.48	0	1609960..1610403	+	147	104774604	-	Ldb1914	-	hypothetical protein
1348	 51.20	0	1610409..1611158	+	249	104774605	-	Ldb1915	-	hypothetical protein
1349	 53.73	0	1612353..1614632	-	759	104774606	-	Ldb1919	-	putative helicase
1350	 51.13	0	1614828..1615490	+	220	104774607	-	Ldb1920	-	hypothetical protein
1351	 52.75	0	1615505..1616158	+	217	104774608	-	Ldb1921	-	putative fructose-2,6-bisphosphatase
1352	 53.39	0	1616275..1616967	+	230	104774609	glpQ	Ldb1922	-	glycerophosphoryl diester phosphodiesterase
1353	 45.78	0	1617544..1618965	-	473	104774610	-	Ldb1925	-	hypothetical protein
1354	 48.21	0	1619108..1619275	-	55	104774611	-	Ldb1926	-	hypothetical protein
1355	 52.08	0	1619858..1620097	-	79	104774612	-	Ldb1928	-	hypothetical protein
1356	 52.12	0	1620645..1621352	-	235	104774613	-	Ldb1930	-	hypothetical protein
1357	 47.32	0	1621540..1621968	+	142	104774614	gtcA	Ldb1931	-	teichoic acid glycosylation protein
1358	 54.00	0	1622078..1622527	+	149	104774615	-	Ldb1932	-	hypothetical protein
1359	 45.32	-1	1622769..1623035	+	88	104774616	-	Ldb1933	-	hypothetical protein
1360	 43.63	-1	1623400..1624623	-	407	104774617	-	Ldb1934	-	transposase
1361	 45.24	-1	1624734..1624817	+	27	104774618	-	Ldb1935	-	hypothetical protein
1362	 41.67	-1	1624772..1624855	+	27	104774619	-	Ldb1936	-	hypothetical protein
1363	 46.45	0	1624895..1625359	-	154	104774620	tagD	Ldb1937	-	EpsIIN, glycerol-3-phosphate cytidylyltransferase
1364	 45.61	0	1625377..1626288	-	303	104774621	epsIIM	Ldb1938	-	hypothetical protein
1365	 47.77	0	1626309..1627742	-	477	104774622	epsIIL	Ldb1939	-	polysaccharide repeat-containing transporter
1366	 36.72	-2	1628711..1629919	-	402	104774623	epsIIJ	Ldb1942	-	hypothetical protein
1367	 34.65	-2	1629961..1630719	-	252	104774624	epsII-I	Ldb1943	-	EpsII-I, putative glycosyltransferase
1368	 38.61	-2	1630740..1631858	-	372	104774625	epsIIH	Ldb1944	-	EpsIIH, putative glycosyltransferase
1369	 40.40	-1	1631851..1632756	-	301	104774626	epsIIG	Ldb1945	-	EpsIIG, putative glycosyltransferase
1370	 49.82	0	1634136..1635251	-	371	104774627	glf1	Ldb1949	-	EpsIIE, UDP-galactopyranose mutase
1371	 49.42	0	1635272..1636048	-	258	104774628	epsIID	Ldb1950	-	EpsIID, putative glycosyltransferase
1372	 47.09	0	1636065..1636733	-	222	104774629	epsIIC	Ldb1951	-	EpsIIC, putative glycosyltransferase
1373	 50.45	0	1636923..1637705	-	260	104774630	epsIIB	Ldb1952	-	EpsIIB, putative glycosyltransferase
1374	 51.12	0	1637819..1638982	-	387	104774631	epsIIA	Ldb1953	-	eps operon transcriptional regulator EpsIIA
1375	 50.00	0	1640436..1640765	-	109	104774632	-	Ldb1956	-	hypothetical protein
1376	 57.93	+1	1640771..1641205	-	144	104774633	-	Ldb1957	-	hypothetical protein
1377	 55.00	0	1641309..1641668	-	119	104774634	-	Ldb1958	-	XRE family transcriptional regulator
1378	 54.24	0	1641805..1642818	-	337	104774635	gpsA2	Ldb1959	-	glycerol-3-phosphate dehydrogenase
1379	 44.37	-1	1644433..1645275	-	280	104774636	-	Ldb1963	-	hypothetical protein
1380	 47.31	0	1646804..1646989	+	61	104774637	-	Ldb1967	-	hypothetical protein
1381	 52.53	0	1647486..1648475	+	329	104774638	-	Ldb1968	-	ABC transporter, substrate-binding protein
1382	 56.10	+1	1649160..1649585	-	141	104774639	msrB	Ldb1971	-	methionine sulfoxide reductase B
1383	 53.03	0	1650453..1651427	-	324	104774640	rmlD	Ldb1974	-	dTDP-4-dehydrorhamnose reductase
1384	 46.58	0	1652086..1652961	-	291	104774641	-	Ldb1976	-	hypothetical protein
1385	 50.51	0	1652961..1653350	-	129	104774642	-	Ldb1977	-	hypothetical protein
1386	 52.73	0	1653328..1653492	-	54	104774643	-	Ldb1978	-	hypothetical protein
1387	 43.79	-1	1653730..1654953	-	407	104774644	-	Ldb1979	-	transposase
1388	 46.43	0	1655064..1655147	+	27	104774645	-	Ldb1980	-	hypothetical protein
1389	 42.86	-1	1655102..1655185	+	27	104774646	-	Ldb1981	-	hypothetical protein
1390	 41.06	-1	1655201..1655446	-	81	104774647	-	Ldb1982	-	hypothetical protein
1391	 51.69	0	1656725..1657612	+	295	104774648	-	Ldb1984	-	LysR family transcriptional regulator
1392	 33.96	-2	1657684..1661331	-	1215	104774649	-	Ldb1985	-	hypothetical protein
1393	 44.00	-1	1661731..1661955	-	74	104774650	-	Ldb1986	-	hypothetical protein
1394	 47.03	0	1661927..1663678	-	583	104774651	-	Ldb1987	-	putative transposase
1395	 39.66	-2	1663852..1664025	-	57	104774652	-	Ldb1988	-	hypothetical protein
1396	 33.77	-2	1664111..1665031	-	306	104774653	-	Ldb1989	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.