IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1262	 44.04	-1	1493538..1494761	-	407	104774519	-	Ldb1752	-	transposase
1263	 45.24	-1	1494872..1494955	+	27	104774520	-	Ldb1753	-	hypothetical protein
1264	 42.86	-1	1494910..1494993	+	27	104774521	-	Ldb1754	-	hypothetical protein
1265	 49.21	0	1495110..1495991	-	293	104774522	-	Ldb1755	-	aggregation promoting factor
1266	 57.87	+1	1496784..1497647	-	287	104774523	thrB	Ldb1760	-	homoserine kinase
1267	 55.38	0	1497815..1499293	+	492	104774524	thrC	Ldb1761	-	threonine synthase
1268	 54.99	0	1499902..1500432	+	176	104774525	-	Ldb1765	-	putative acetyltransferase
1269	 51.49	0	1500362..1501066	-	234	104774526	-	Ldb1766	-	hypothetical protein
1270	 48.09	0	1501211..1501393	-	60	104774527	-	Ldb1767	-	hypothetical protein
1271	 53.11	0	1503384..1503833	+	149	104774528	-	Ldb1771	-	PTS system, sucrose-specific enzyme IIA component
1272	 56.20	+1	1504020..1505099	+	359	104774529	pfk2	Ldb1772	-	6-phosphofructokinase
1273	 53.54	0	1505181..1506902	-	573	104774530	pgm	Ldb1773	-	phosphoglucomutase
1274	 35.42	-2	1508502..1510607	-	701	104774531	-	Ldb1775	-	ornithine decarboxylase
1275	 36.36	-2	1513394..1514548	-	384	104774532	-	Ldb1779	-	hypothetical protein
1276	 38.03	-2	1515018..1516187	-	389	104774533	-	Ldb1781	-	hypothetical protein
1277	 38.95	-2	1516392..1517441	+	349	104774534	-	Ldb1782	-	transposase
1278	 54.77	0	1519474..1520709	+	411	104774535	-	Ldb1787	-	putative oxalate:formate antiporter
1279	 46.73	0	1521279..1521584	-	101	104774536	-	Ldb1790	-	hypothetical protein
1280	 52.79	0	1521724..1524858	+	1044	104774537	-	Ldb1791	-	putative helicase
1281	 52.53	0	1524939..1525928	+	329	104774538	galE	Ldb1792	-	UDP-glucose 4-epimerase
1282	 43.30	-1	1525981..1526331	-	116	104774539	-	Ldb1793	-	XRE family transcriptional regulator
1283	 35.29	-2	1526407..1526610	-	67	104774540	-	Ldb1794	-	hypothetical protein
1284	 53.38	0	1526790..1527632	-	280	104774541	dpp	Ldb1795	-	putative dipeptidyl-peptidase
1285	 51.35	0	1527825..1529195	+	456	104774542	-	Ldb1796	-	amino acid permease
1286	 45.45	-1	1529246..1529608	-	120	104774543	-	Ldb1797	-	hypothetical protein
1287	 46.34	0	1529766..1530134	-	122	104774544	-	Ldb1798	-	hypothetical protein
1288	 48.42	0	1530144..1531058	-	304	104774545	-	Ldb1799	-	PTS system, mannose-specific enzyme IID component
1289	 50.80	0	1531087..1531899	-	270	104774546	-	Ldb1800	-	PTS system, mannose-specific enzyme IIC component
1290	 49.12	0	1531902..1532921	-	339	104774547	-	Ldb1801	-	PTS system, mannose-specific enzyme IIAB component
1291	 44.12	-1	1534496..1535719	-	407	104774548	-	Ldb1803	-	transposase
1292	 45.24	-1	1535830..1535913	+	27	104774549	-	Ldb1804	-	hypothetical protein
1293	 42.86	-1	1535868..1535951	+	27	104774550	-	Ldb1805	-	hypothetical protein
1294	 53.70	0	1538330..1539709	+	459	104774551	-	Ldb1810	-	Na(+)/H(+) antiporter
1295	 54.60	0	1546406..1546579	-	57	104774552	-	Ldb1816	-	hypothetical protein
1296	 56.09	+1	1546589..1548016	-	475	104774553	sufB	Ldb1817	-	hypothetical protein
1297	 55.10	0	1548017..1548457	-	146	104774554	iscU	Ldb1818	-	NifU homolog involved in Fe-S cluster formation
1298	 55.06	0	1548444..1549658	-	404	104774555	sufS	Ldb1819	-	cysteine desulfurase / selenocysteine lyase
1299	 56.11	+1	1549639..1550775	-	378	104774556	sufD	Ldb1820	-	hypothetical protein
1300	 55.64	0	1550812..1551591	-	259	104774557	sufC	Ldb1821	-	ATP-binding protein involved in Fe/S cluster assembly
1301	 51.72	0	1551778..1552299	+	173	104774558	-	Ldb1822	-	putative acetyltransferase
1302	 54.22	0	1552473..1552970	-	165	104774559	-	Ldb1823	-	PTS system, glucose/glucoside-specific enzyme IIA component
1303	 53.49	0	1552967..1553467	-	166	104774560	-	Ldb1824	-	hypothetical protein
1304	 49.67	0	1554059..1554211	-	50	104774561	-	Ldb1827	-	hypothetical protein
1305	 44.64	-1	1554229..1554909	-	226	104774562	-	Ldb1828	-	ABC transporter, ATP-binding protein
1306	 41.59	-1	1554909..1556144	-	411	104774563	-	Ldb1829	-	hypothetical protein
1307	 40.25	-2	1556156..1556632	-	158	104774564	-	Ldb1830	-	hypothetical protein
1308	 37.94	-2	1556632..1557000	-	122	104774565	-	Ldb1831	-	hypothetical protein
1309	 51.08	0	1557166..1557627	-	153	104774566	smpB	Ldb1832	-	SsrA-binding protein
1310	 55.32	0	1557650..1560019	-	789	104774567	rnr	Ldb1833	-	exoribonuclease R
1311	 42.74	-1	1560086..1560319	-	77	104774568	secG	Ldb1834	-	preprotein translocase subunit SecG
1312	 52.39	0	1560374..1562446	-	690	104774569	-	Ldb1835	-	putative phosphoglycerol transferase
1313	 54.44	0	1562465..1563478	-	337	104774570	-	Ldb1836	-	hypothetical protein
1314	 55.46	0	1563471..1564505	-	344	104774571	-	Ldb1837	-	putative glycosyltransferase
1315	 54.70	0	1564513..1565682	-	389	104774572	-	Ldb1838	-	putative glycosyltransferase
1316	 42.86	-1	1571739..1571822	-	27	104774573	-	Ldb1872	-	hypothetical protein
1317	 45.24	-1	1571777..1571860	-	27	104774574	-	Ldb1873	-	hypothetical protein
1318	 43.95	-1	1571971..1573194	+	407	104774575	-	Ldb1874	-	transposase
1319	 52.71	0	1579097..1579963	-	288	104774576	-	Ldb1880	-	putative anti-sigma factor
1320	 52.66	0	1579977..1580540	-	187	104774577	-	Ldb1881	-	RNA polymerase ECF-subfamily sigma factor
1321	 52.22	0	1580698..1582005	-	435	104774578	serS	Ldb1882	-	seryl-tRNA synthetase
1322	 54.01	0	1582249..1582722	-	157	104774579	-	Ldb1883	-	putative acetyltransferase
1323	 52.69	0	1582743..1583336	-	197	104774580	-	Ldb1884	-	hypothetical protein
1324	 56.72	+1	1583543..1584346	+	267	104774581	-	Ldb1885	-	putative esterase
1325	 50.64	0	1584349..1585209	+	286	104774582	-	Ldb1886	-	XRE family transcriptional regulator
1326	 53.41	0	1585250..1585747	-	165	104774583	ndt2	Ldb1887	-	nucleoside deoxyribosyltransferase
1327	 55.80	0	1585756..1586427	-	223	104774584	-	Ldb1888	-	putative glutamine amidotransferase
1328	 52.71	0	1587959..1589047	-	362	104774585	-	Ldb1890	-	hypothetical protein
1329	 53.50	0	1589160..1592342	-	1060	104774586	-	Ldb1891	-	permease
1330	 54.62	0	1592386..1592958	-	190	104774587	-	Ldb1892	-	TetR family transcriptional regulator
1331	 41.87	-1	1593130..1593375	+	81	104774588	-	Ldb1893	-	hypothetical protein
1332	 52.68	0	1593414..1594328	-	304	104774589	-	Ldb1894	-	hypothetical protein
1333	 48.58	0	1594360..1595277	-	305	104774590	-	Ldb1895	-	putative cation transporter
1334	 56.31	+1	1595372..1596259	+	295	104774591	pepIP	Ldb1896	-	proline iminopeptidase
1335	 54.93	0	1596814..1597401	-	195	104774592	-	Ldb1898	-	hypothetical protein
1336	 54.02	0	1597920..1598765	-	281	104774593	-	Ldb1900	-	hypothetical protein
1337	 54.39	0	1598892..1599722	+	276	104774594	-	Ldb1901	-	2,5-didehydrogluconate reductase
1338	 45.64	0	1599849..1600295	+	148	104774595	-	Ldb1902	-	hypothetical protein
1339	 55.08	0	1601554..1603149	-	531	104774596	-	Ldb1906	-	ABC transporter, ATP-binding/permease protein
1340	 46.24	0	1603426..1604448	+	340	104774597	-	Ldb1907	-	transposase
1341	 54.03	0	1604587..1605654	+	355	104774598	-	Ldb1908	-	hypothetical protein
1342	 54.54	0	1605723..1606637	+	304	104774599	pepPN	Ldb1909	-	prolyl aminopeptidase
1343	 54.44	0	1606793..1607569	+	258	104774600	-	Ldb1910	-	hypothetical protein
1344	 52.15	0	1607625..1608182	-	185	104774601	efp2	Ldb1911	-	elongation factor P (EF-P)
1345	 52.79	0	1608236..1609150	-	304	104774602	coaA	Ldb1912	-	pantothenate kinase
1346	 56.49	+1	1609253..1609822	+	189	104774603	-	Ldb1913	-	putative lipase
1347	 52.48	0	1609960..1610403	+	147	104774604	-	Ldb1914	-	hypothetical protein
1348	 51.20	0	1610409..1611158	+	249	104774605	-	Ldb1915	-	hypothetical protein
1349	 53.73	0	1612353..1614632	-	759	104774606	-	Ldb1919	-	putative helicase
1350	 51.13	0	1614828..1615490	+	220	104774607	-	Ldb1920	-	hypothetical protein
1351	 52.75	0	1615505..1616158	+	217	104774608	-	Ldb1921	-	putative fructose-2,6-bisphosphatase
1352	 53.39	0	1616275..1616967	+	230	104774609	glpQ	Ldb1922	-	glycerophosphoryl diester phosphodiesterase
1353	 45.78	0	1617544..1618965	-	473	104774610	-	Ldb1925	-	hypothetical protein
1354	 48.21	0	1619108..1619275	-	55	104774611	-	Ldb1926	-	hypothetical protein
1355	 52.08	0	1619858..1620097	-	79	104774612	-	Ldb1928	-	hypothetical protein
1356	 52.12	0	1620645..1621352	-	235	104774613	-	Ldb1930	-	hypothetical protein
1357	 47.32	0	1621540..1621968	+	142	104774614	gtcA	Ldb1931	-	teichoic acid glycosylation protein
1358	 54.00	0	1622078..1622527	+	149	104774615	-	Ldb1932	-	hypothetical protein
1359	 45.32	-1	1622769..1623035	+	88	104774616	-	Ldb1933	-	hypothetical protein
1360	 43.63	-1	1623400..1624623	-	407	104774617	-	Ldb1934	-	transposase
1361	 45.24	-1	1624734..1624817	+	27	104774618	-	Ldb1935	-	hypothetical protein
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.