IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1149	 51.05	0	1372245..1372865	-	206	104774406	-	Ldb1600	-	xanthosine triphosphate pyrophosphatase
1150	 52.27	0	1373104..1373499	+	131	104774407	-	Ldb1601	-	hypothetical protein
1151	 48.40	0	1373581..1373892	-	103	104774408	trxA1	Ldb1602	-	thioredoxin
1152	 56.56	+1	1373986..1376349	-	787	104774409	mutS2	Ldb1603	-	DNA mismatch repair protein MutS2
1153	 46.60	0	1376413..1376736	-	107	104774410	-	Ldb1604	-	hypothetical protein
1154	 56.18	+1	1376739..1377167	-	142	104774411	ruvX	Ldb1605	-	putative Hollyday junction resolvase
1155	 50.00	0	1377167..1377424	-	85	104774412	-	Ldb1606	-	hypothetical protein
1156	 53.75	0	1377490..1380090	-	866	104774413	alaS	Ldb1607	-	alanyl-tRNA synthetase
1157	 57.34	+1	1380362..1381723	-	453	104774414	-	Ldb1608	-	DEAD-box ATP dependent DNA helicase
1158	 54.17	0	1381716..1382675	-	319	104774415	-	Ldb1609	-	DHH family phosphoesterase
1159	 55.38	0	1382738..1383853	-	371	104774416	dinB	Ldb1610	-	DNA polymerase IV
1160	 53.29	0	1383853..1385280	-	475	104774417	gpd	Ldb1611	-	glucose-6-phosphate 1-dehydrogenase
1161	 48.74	0	1385394..1385789	-	131	104774418	yajC	Ldb1612	-	preprotein translocase, YajC subunit
1162	 57.47	+1	1385878..1386888	-	336	104774419	ruvB	Ldb1613	-	Holliday junction DNA helicase B
1163	 54.21	0	1386902..1387495	-	197	104774420	ruvA	Ldb1614	-	Holliday junction DNA helicase RuvA
1164	 53.57	0	1387505..1389466	-	653	104774421	mutL	Ldb1615	-	DNA mismatch repair protein MutL
1165	 55.04	0	1389466..1392036	-	856	104774422	mutS1	Ldb1616	-	DNA mismatch repair protein
1166	 52.29	0	1392354..1393967	-	537	104774423	groEL	Ldb1617	-	chaperonin GroEL
1167	 44.21	-1	1393994..1394278	-	94	104774424	groES	Ldb1618	-	co-chaperonin GroES
1168	 51.09	0	1394434..1395120	-	228	104774425	-	Ldb1619	-	redox-sensing transcriptional repressor Rex
1169	 54.36	0	1395401..1397317	+	638	104774426	-	Ldb1620	-	ABC transporter, ATP-binding protein
1170	 57.35	+1	1397384..1398424	-	346	104774427	gcp	Ldb1621	-	putative glycoprotein endopeptidase
1171	 53.30	0	1398427..1398957	-	176	104774428	-	Ldb1622	-	putative acetyltransferase
1172	 53.94	0	1398962..1399684	-	240	104774429	-	Ldb1623	-	putative peptidase
1173	 53.48	0	1399702..1400232	-	176	104774430	-	Ldb1624	-	hypothetical protein
1174	 53.30	0	1400317..1400847	-	176	104774431	-	Ldb1625	-	hypothetical protein
1175	 51.47	0	1400890..1401639	-	249	104774432	-	Ldb1626	-	putative acyl-ACP (acyl-carrier-protein) thioesterase
1176	 54.51	0	1401636..1402499	-	287	104774433	-	Ldb1627	-	putative methyltransferase
1177	 50.15	0	1402499..1402831	-	110	104774434	-	Ldb1628	-	DNA replication intiation control protein YabA
1178	 54.98	0	1402846..1403718	-	290	104774435	-	Ldb1629	-	hypothetical protein
1179	 52.91	0	1403718..1404044	-	108	104774436	-	Ldb1630	-	hypothetical protein
1180	 55.71	0	1404056..1404694	-	212	104774437	tmk	Ldb1631	-	thymidylate kinase
1181	 48.10	0	1404824..1405060	-	78	104774438	-	Ldb1632	-	hypothetical protein
1182	 56.17	+1	1405062..1405661	-	199	104774439	recR	Ldb1633	-	recombination protein RecR
1183	 52.73	0	1405663..1405992	-	109	104774440	-	Ldb1634	-	hypothetical protein
1184	 56.69	+1	1406074..1407897	-	607	104774441	dnaX	Ldb1635	-	DNA polymerase III, gamma/tau subunit
1185	 54.90	0	1408057..1408566	-	169	104774442	-	Ldb1636	-	cytosine/adenosine deaminase
1186	 53.57	0	1408566..1409168	-	200	104774443	-	Ldb1637	-	putative methyltransferase
1187	 56.69	+1	1409170..1409700	-	176	104774444	pyrR2	Ldb1638	-	pyrimidine operon regulatory protein / Uracil phosphoribosyltransferase
1188	 53.52	0	1409791..1412619	-	942	104774445	-	Ldb1639	-	hypothetical protein
1189	 55.56	0	1412715..1412993	-	92	104774446	-	Ldb1640	-	hypothetical protein
1190	 51.92	0	1413797..1413952	+	51	104774447	-	Ldb1643	-	hypothetical protein
1191	 50.58	0	1414083..1415201	-	372	104774448	-	Ldb1644	-	putative penicillin binding protein
1192	 52.57	0	1415301..1416428	-	375	104774449	-	Ldb1645	-	putative penicillin binding protein
1193	 47.62	0	1416585..1416857	-	90	104774450	hlbB	Ldb1646	-	histone-like DNA-binding protein
1194	 45.53	0	1417684..1417806	+	40	104774451	-	Ldb1650	-	hypothetical protein
1195	 52.15	0	1418211..1418651	+	146	104774452	-	Ldb1651	-	hypothetical protein
1196	 50.85	0	1418677..1418910	+	77	104774453	-	Ldb1652	-	hypothetical protein
1197	 52.03	0	1421064..1421186	+	40	104774454	-	Ldb1656	-	hypothetical protein
1198	 45.63	0	1421353..1421718	-	121	104774455	rplL	Ldb1657	-	50S ribosomal protein L7/L12
1199	 46.27	0	1421771..1422280	-	169	104774456	rplJ	Ldb1658	-	50S ribosomal protein L10
1200	 57.97	+1	1424202..1424270	+	22	104774457	-	Ldb1661	-	hypothetical protein
1201	 50.40	0	1424233..1424853	+	206	104774458	-	Ldb1662	-	hypothetical protein
1202	 55.96	+1	1425077..1426327	+	416	104774459	amtB	Ldb1663	-	ammonia permease
1203	 53.13	0	1426424..1427428	-	334	104774460	-	Ldb1664	-	glycosyltransferase
1204	 48.42	0	1427591..1428286	-	231	104774461	rplA	Ldb1665	-	50S ribosomal protein L1
1205	 46.01	0	1428370..1428795	-	141	104774462	rplK	Ldb1666	-	50S ribosomal protein L11
1206	 49.91	0	1428921..1429475	-	184	104774463	nusG	Ldb1667	-	transcription antitermination protein nusG
1207	 42.11	-1	1429567..1429737	-	56	104774464	secE	Ldb1668	-	preprotein translocase subunit SecE
1208	 50.67	0	1429744..1429893	-	49	104774465	rpmG	Ldb1669	-	50S ribosomal protein L33
1209	 43.98	-1	1432831..1433046	-	71	104774466	-	Ldb1676	-	hypothetical protein
1210	 51.58	0	1433114..1433683	-	189	104774467	-	Ldb1677	-	putative RNA polymerase sigma factor
1211	 54.69	0	1433795..1434562	-	255	104774468	-	Ldb1678	-	tRNA/rRNA methyltransferase
1212	 52.03	0	1434531..1434974	-	147	104774469	-	Ldb1679	-	hypothetical protein
1213	 54.32	0	1434967..1436391	-	474	104774470	cysS	Ldb1680	-	cysteinyl-tRNA synthetase
1214	 51.32	0	1436533..1437099	+	188	104774471	-	Ldb1681	-	hypothetical protein
1215	 55.33	0	1437291..1437581	+	96	104774472	-	Ldb1682	-	hypothetical protein
1216	 55.71	0	1437636..1438511	-	291	104774473	-	Ldb1683	-	LysR family transcriptional regulator
1217	 57.02	+1	1438630..1439655	+	341	104774474	-	Ldb1684	-	hypothetical protein
1218	 51.36	0	1439737..1441239	-	500	104774475	gltX	Ldb1685	-	glutamyl-tRNA synthetase
1219	 53.88	0	1441385..1442221	-	278	104774476	-	Ldb1686	-	ABC transporter permease
1220	 51.76	0	1442920..1443288	-	122	104774477	-	Ldb1689	-	GntR family transcriptional regulator
1221	 52.00	0	1445403..1445927	+	174	104774478	-	Ldb1691	-	NUDIX family hydrolase
1222	 45.72	0	1445968..1447194	-	408	104774479	-	Ldb1692	-	hypothetical protein
1223	 46.61	0	1447185..1447523	-	112	104774480	-	Ldb1693	-	hypothetical protein
1224	 42.47	-1	1447516..1447701	-	61	104774481	-	Ldb1694	-	hypothetical protein
1225	 38.34	-2	1447698..1448555	-	285	104774482	rfbA	Ldb1695	-	putative glucose-1-phosphate thymidylyltransferase
1226	 36.61	-2	1448571..1449638	-	355	104774483	-	Ldb1696	-	hypothetical protein
1227	 42.64	-1	1450483..1451685	-	400	104774484	-	Ldb1699	-	permease
1228	 56.42	+1	1451970..1453091	-	373	104774485	pepZ	Ldb1700	-	X-Pro dipeptidase PepZ
1229	 51.82	0	1453355..1453765	+	136	104774486	-	Ldb1701	-	hypothetical protein
1230	 52.15	0	1455151..1455336	+	61	104774487	-	Ldb1705	-	hypothetical protein
1231	 56.15	+1	1455432..1455935	-	167	104774488	-	Ldb1706	-	hypothetical protein
1232	 54.34	0	1456097..1457491	-	464	104774489	-	Ldb1707	-	acetaldehyde dehydrogenase
1233	 51.09	0	1457920..1458747	-	275	104774490	-	Ldb1708	-	ABC transporter, permease protein
1234	 53.64	0	1458740..1460458	-	572	104774491	-	Ldb1709	-	ABC transporter, ATP-binding protein
1235	 54.01	0	1460470..1461030	-	186	104774492	-	Ldb1710	-	hypothetical protein
1236	 55.28	0	1461054..1461905	-	283	104774493	-	Ldb1711	-	hypothetical protein
1237	 52.48	0	1462109..1463497	-	462	104774494	-	Ldb1712	-	amino acid permease
1238	 47.70	0	1463605..1465407	-	600	104774495	-	Ldb1713	-	hypothetical protein
1239	 51.88	0	1465355..1466260	-	301	104774496	-	Ldb1714	-	ABC transporter, ATP-binding protein
1240	 50.40	0	1466247..1466621	-	124	104774497	-	Ldb1715	-	GntR family transcriptional regulator
1241	 50.74	0	1474093..1475040	-	315	104774498	-	Ldb1726	-	glycosyltransferase
1242	 55.77	0	1475150..1476526	-	458	104774499	sms	Ldb1727	-	DNA repair protein RadA
1243	 52.43	0	1476526..1477080	-	184	104774500	dut	Ldb1728	-	dUTP diphosphatase
1244	 47.22	0	1477187..1477474	+	95	104774501	-	Ldb1729	-	hypothetical protein
1245	 50.96	0	1477560..1478909	+	449	104774502	pepC	Ldb1730	-	aminopeptidase C
1246	 42.86	-1	1478975..1479268	-	97	104774503	-	Ldb1731	-	hypothetical protein
1247	 49.68	0	1479262..1480197	-	311	104774504	-	Ldb1732	-	hypothetical protein
1248	 53.25	0	1480310..1480771	-	153	104774505	fabZ2	Ldb1733	-	hydroxymyristoyl-[acyl carrier protein] dehydratase
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.