IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1044	 54.23	0	1236011..1237489	-	492	104774301	purF	Ldb1439	-	amidophosphoribosyltransferase
1045	 54.75	0	1237465..1239687	-	740	104774302	purL	Ldb1440	-	phosphoribosylformylglycinamidine synthase II
1046	 53.04	0	1239687..1240361	-	224	104774303	purQ	Ldb1441	-	phosphoribosylformylglycinamidine synthase I
1047	 43.78	-1	1240361..1240609	-	82	104774304	purS	Ldb1442	-	phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
1048	 49.52	0	1240614..1241336	-	240	104774305	purC	Ldb1443	-	phosphoribosylaminoimidazole- succinocarboxamidesynthetase
1049	 53.16	0	1241660..1242955	-	431	104774306	purB	Ldb1444	-	adenylosuccinate lyase
1050	 53.70	0	1242999..1244132	-	377	104774307	purK	Ldb1445	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1051	 53.86	0	1244113..1244604	-	163	104774308	purE	Ldb1446	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1052	 50.59	0	1244763..1245017	-	84	104774309	-	Ldb1447	-	hypothetical protein
1053	 47.65	0	1245018..1246232	-	404	104774310	-	Ldb1448	-	putative permease
1054	 49.94	0	1248108..1249919	-	603	104774311	-	Ldb1451	-	hypothetical protein
1055	 55.61	0	1252729..1255107	+	792	104774312	pepX	Ldb1455	-	x-prolyl-dipeptidyl aminopeptidase
1056	 54.39	0	1255219..1256562	+	447	104774313	-	Ldb1456	-	putative permease
1057	 55.63	0	1257695..1258618	+	307	104774314	cysK1	Ldb1458	-	cysteine synthase
1058	 37.39	-2	1259758..1260939	+	393	104774315	cfa	Ldb1461	-	cyclopropane-fatty-acyl-phospholipid synthase
1059	 52.97	0	1262377..1263369	-	330	104774316	add	Ldb1463	-	adenosine deaminase
1060	 50.88	0	1263591..1263932	-	113	104774317	-	Ldb1464	-	hypothetical protein
1061	 43.79	-1	1265571..1266794	-	407	104774318	-	Ldb1466	-	transposase
1062	 45.24	-1	1266905..1266988	+	27	104774319	-	Ldb1467	-	hypothetical protein
1063	 42.86	-1	1266943..1267026	+	27	104774320	-	Ldb1468	-	hypothetical protein
1064	 45.70	0	1267332..1267703	-	123	104774321	-	Ldb1470	-	hypothetical protein
1065	 54.63	0	1267804..1269024	-	406	104774322	-	Ldb1471	-	permease
1066	 50.60	0	1269274..1270611	-	445	104774323	glnA	Ldb1472	-	glutamine synthetase (glutamate-ammonia ligase)
1067	 54.15	0	1272003..1272929	-	308	104774324	miaA	Ldb1476	-	tRNA isopentenyltransferase
1068	 53.98	0	1273010..1273411	-	133	104774325	-	Ldb1477	-	hypothetical protein
1069	 41.13	-1	1273474..1273704	-	76	104774326	-	Ldb1478	-	hypothetical protein
1070	 55.71	0	1273701..1274348	-	215	104774327	-	Ldb1479	-	hypothetical protein
1071	 42.67	-1	1274993..1275142	-	49	104774328	rpmG	Ldb1482	-	50S ribosomal protein L33
1072	 53.33	0	1275229..1277343	-	704	104774329	pbp	Ldb1483	-	penicillin-binding protein
1073	 51.62	0	1277512..1280010	+	832	104774330	-	Ldb1484	-	hypothetical protein
1074	 49.69	0	1280062..1280550	-	162	104774331	greA1	Ldb1485	-	transcription elongation factor GreA
1075	 53.86	0	1280621..1283032	-	803	104774332	pheT	Ldb1486	-	phenylalanyl-tRNA synthetase, beta subunit
1076	 53.90	0	1283032..1284081	-	349	104774333	pheS	Ldb1487	-	phenylalanyl-tRNA synthetase, alpha subunit
1077	 54.99	0	1284363..1284713	-	116	104774334	-	Ldb1488	-	MarR family transcriptional regulator
1078	 54.02	0	1284795..1285577	-	260	104774335	-	Ldb1489	-	tRNA/rRNA methyltransferase
1079	 49.82	0	1285643..1285915	+	90	104774336	-	Ldb1490	-	putative acylphosphatase
1080	 55.14	0	1285949..1286911	+	320	104774337	-	Ldb1491	-	hypothetical protein
1081	 52.61	0	1287005..1288597	-	530	104774338	-	Ldb1492	-	two-component system, sensor histidine kinase
1082	 52.94	0	1288590..1289303	-	237	104774339	-	Ldb1493	-	two-component system, response regulator
1083	 50.95	0	1289482..1290060	-	192	104774340	-	Ldb1494	-	hypothetical protein
1084	 53.16	0	1290060..1291214	-	384	104774341	-	Ldb1495	-	hypothetical protein
1085	 53.74	0	1291217..1291564	-	115	104774342	-	Ldb1496	-	hypothetical protein
1086	 52.53	0	1291606..1292199	-	197	104774343	-	Ldb1497	-	HD superfamily hydrolase
1087	 53.21	0	1292192..1292830	-	212	104774344	nadD	Ldb1498	-	nicotinate-nucleotide adenylyltransferase
1088	 55.05	0	1292841..1293950	-	369	104774345	-	Ldb1499	-	GTP-binding protein YqeH
1089	 47.90	0	1294059..1294415	-	118	104774346	rplT	Ldb1500	-	50S ribosomal protein L20
1090	 50.75	0	1294460..1294660	-	66	104774347	rpmI	Ldb1501	-	50S ribosomal protein L35
1091	 47.32	0	1294681..1295202	-	173	104774348	infC	Ldb1502	-	translation initiation factor IF-3
1092	 48.18	0	1295755..1297155	+	466	104774349	-	Ldb1503	-	hypothetical protein
1093	 34.13	-2	1297236..1297487	-	83	104774350	-	Ldb1504	-	hypothetical protein
1094	 36.23	-2	1297492..1298112	-	206	104774351	-	Ldb1505	-	hypothetical protein
1095	 50.93	0	1298299..1300230	-	643	104774352	thrS	Ldb1506	-	threonyl-tRNA synthetase
1096	 56.93	+1	1300531..1301454	-	307	104774353	dnaI	Ldb1507	-	primosomal protein DnaI
1097	 54.16	0	1301465..1302799	-	444	104774354	dnaB	Ldb1508	-	chromosome replication initiation/membrane attachment protein DnaB
1098	 56.41	+1	1302803..1303270	-	155	104774355	-	Ldb1509	-	transcriptional regulator NrdR
1099	 49.74	0	1303284..1303868	-	194	104774356	coaE	Ldb1510	-	dephospho-CoA kinase
1100	 52.43	0	1303877..1304698	-	273	104774357	fpg	Ldb1511	-	DNA-formamidopyrimidine glycosylase
1101	 51.60	0	1304709..1307369	-	886	104774358	polA	Ldb1512	-	DNA polymerase I
1102	 51.80	0	1310876..1311097	+	73	104774359	-	Ldb1520	-	hypothetical protein
1103	 52.80	0	1311708..1313027	-	439	104774360	murC	Ldb1522	-	UDP-N-acetylmuramate--L-alanine ligase
1104	 53.86	0	1313147..1313794	-	215	104774361	-	Ldb1523	-	hypothetical protein
1105	 48.29	0	1313817..1314137	-	106	104774362	trxA2	Ldb1524	-	thioredoxin
1106	 53.27	0	1314216..1314872	-	218	104774363	-	Ldb1525	-	tRNA (guanine-N(7)-)-methyltransferase
1107	 52.96	0	1314949..1316166	-	405	104774364	-	Ldb1526	-	ABC transporter, permease protein
1108	 52.23	0	1316159..1316920	-	253	104774365	-	Ldb1527	-	ABC transporter, ATP-binding protein
1109	 49.77	0	1317003..1317440	+	145	104774366	-	Ldb1528	-	hydrolase (HIT family)
1110	 54.99	0	1317457..1317807	+	116	104774367	-	Ldb1529	-	hypothetical protein
1111	 55.91	0	1317887..1318816	-	309	104774368	pyrD2	Ldb1530	-	dihydroorotate dehydrogenase
1112	 55.05	0	1319089..1319811	+	240	104774369	pyrF	Ldb1531	-	orotidine-5'-phosphate decarboxylase
1113	 53.53	0	1319801..1320424	+	207	104774370	pyrE	Ldb1532	-	orotate phosphoribosyltransferase
1114	 47.37	0	1320551..1321462	+	303	104774371	prsA	Ldb1533	-	peptidylprolyl isomerase
1115	 53.15	0	1323859..1326285	-	808	104774372	-	Ldb1539	-	hypothetical protein
1116	 53.48	0	1326282..1327487	-	401	104774373	-	Ldb1540	-	hypothetical protein
1117	 49.15	0	1327490..1327843	-	117	104774374	-	Ldb1541	-	hypothetical protein
1118	 54.60	0	1327885..1329972	-	695	104774375	pbp2A	Ldb1542	-	penicillin-binding protein 2A
1119	 52.30	0	1330113..1330961	+	282	104774376	-	Ldb1543	-	pseudouridylate synthase
1120	 47.15	0	1331056..1331967	-	303	104774377	fba	Ldb1544	-	fructose-bisphosphate aldolase
1121	 42.64	-1	1332962..1333090	-	42	104774378	-	Ldb1546	-	hypothetical protein
1122	 52.69	0	1333160..1333531	-	123	104774379	-	Ldb1547	-	hypothetical protein
1123	 48.09	0	1333922..1334287	-	121	104774380	-	Ldb1548	-	hypothetical protein
1124	 48.10	0	1336385..1336594	-	69	104774381	-	Ldb1552	-	hypothetical protein
1125	 53.94	0	1336710..1338257	-	515	104774382	-	Ldb1553	-	hypothetical protein
1126	 54.69	0	1338273..1339124	-	283	104774383	-	Ldb1554	-	hypothetical protein
1127	 54.93	0	1339126..1340412	-	428	104774384	dacA	Ldb1555	-	D-alanyl-D-alanine carboxypeptidase
1128	 48.50	0	1342607..1343470	-	287	104774385	-	Ldb1560	-	hypothetical protein
1129	 53.33	0	1343507..1343671	-	54	104774386	-	Ldb1561	-	hypothetical protein
1130	 44.44	-1	1343690..1343761	-	23	104774387	-	Ldb1562	-	hypothetical protein
1131	 54.38	0	1346594..1348213	-	539	104774388	-	Ldb1569	-	polysaccharide transporter
1132	 52.63	0	1348308..1350722	-	804	104774389	leuS	Ldb1570	-	leucyl-tRNA synthetase
1133	 48.33	0	1352257..1352916	+	219	104774390	-	Ldb1573	-	putative membrane-associated phosphatase
1134	 52.09	0	1352971..1354404	-	477	104774391	-	Ldb1574	-	permease
1135	 58.56	+1	1354482..1355678	-	398	104774392	metK	Ldb1575	-	S-adenosylmethionine synthetase
1136	 55.77	0	1362051..1362977	+	308	104774393	trxB2	Ldb1586	-	thioredoxin reductase
1137	 51.82	0	1363012..1363671	+	219	104774394	-	Ldb1587	-	hypothetical protein
1138	 51.49	0	1363743..1364348	-	201	104774395	-	Ldb1588	-	hypothetical protein
1139	 54.09	0	1364345..1365115	-	256	104774396	-	Ldb1589	-	HAD family sugar phosphatase
1140	 53.66	0	1365112..1365657	-	181	104774397	-	Ldb1590	-	hypothetical protein
1141	 52.97	0	1365605..1367035	-	476	104774398	-	Ldb1591	-	putative 5'-nucleotidase
1142	 48.35	0	1367046..1367378	-	110	104774399	-	Ldb1592	-	hypothetical protein
1143	 52.40	0	1367485..1368486	-	333	104774400	ccpA	Ldb1593	-	catabolite control protein A (CcpA)
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.