IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 73.23	0	1009320..1010264	+	314	184200572	-	KRH_09260	-	hypothetical protein
927	 71.11	0	1010306..1010530	+	74	184200573	-	KRH_09270	-	hypothetical protein
928	 70.66	0	1010562..1010912	+	116	184200574	-	KRH_09280	-	hypothetical protein
929	 75.32	+1	1010890..1011444	+	184	184200575	-	KRH_09290	-	hypothetical protein
930	 75.47	+1	1011534..1012010	+	158	184200576	-	KRH_09300	-	hypothetical protein
931	 74.44	0	1012249..1012608	+	119	184200577	-	KRH_09310	-	hypothetical protein
932	 76.97	+1	1012803..1012967	-	54	184200578	-	KRH_09320	-	hypothetical protein
933	 69.65	0	1012995..1014167	-	390	184200579	glgC	KRH_09330	-	glucose-1-phosphate adenylyltransferase
934	 67.83	0	1014252..1015370	+	372	184200580	prfB	KRH_09340	-	peptide chain release factor 2
935	 67.89	0	1015445..1015933	+	162	184200581	smpB	KRH_09350	-	SsrA-binding protein
936	 75.38	+1	1015946..1016737	-	263	184200582	-	KRH_09360	-	putative ABC transporter ATP-binding protein
937	 71.92	0	1017590..1018465	+	291	184200583	-	KRH_09370	-	hypothetical protein
938	 71.91	0	1018590..1019390	-	266	184200584	hisN	KRH_09380	-	histidinol-phosphate phosphatase
939	 74.82	+1	1019395..1020510	-	371	184200585	-	KRH_09390	-	putative GTPase
940	 75.11	+1	1020515..1021852	-	445	184200586	aroA	KRH_09400	-	3-phosphoshikimate 1-carboxyvinyltransferase
941	 71.32	0	1021867..1022403	-	178	184200587	-	KRH_09410	-	hypothetical protein
942	 67.25	0	1022612..1023292	+	226	184200588	-	KRH_09420	-	RNA polymerase ECF-type sigma factor
943	 67.04	-1	1023296..1023562	+	88	184200589	-	KRH_09430	-	anti-sigma factor
944	 69.67	0	1023882..1024481	-	199	184200590	-	KRH_09440	-	hypothetical protein
945	 69.12	0	1024611..1028435	-	1274	184200591	sucA	KRH_09450	-	2-oxoglutarate dehydrogenase E1 component
946	 83.06	+2	1028679..1028861	+	60	184200592	-	KRH_09460	-	hypothetical protein
947	 73.25	0	1028959..1030416	+	485	184200593	-	KRH_09470	-	putative inosine-5'-monophosphate dehydrogenase
948	 71.57	0	1030543..1031520	+	325	184200594	-	KRH_09480	-	putative ABC transporter substrate-binding protein
949	 73.79	0	1031534..1032418	+	294	184200595	-	KRH_09490	-	putative ABC transporter ATP-binding protein
950	 70.70	0	1032415..1033332	+	305	184200596	-	KRH_09500	-	putative ABC transporter permease protein
951	 76.04	+1	1033397..1034356	-	319	184200597	-	KRH_09510	-	hypothetical protein
952	 71.14	0	1034353..1034799	-	148	184200598	-	KRH_09520	-	Fur family transcriptional regulator
953	 68.78	0	1035010..1035672	+	220	184200599	-	KRH_09530	-	hypothetical protein
954	 69.21	0	1035719..1036150	+	143	184200600	-	KRH_09540	-	putative hydrolase
955	 71.91	0	1036247..1040503	-	1418	184200601	hrpA	KRH_09550	-	ATP-dependent helicase HrpA
956	 67.98	0	1040537..1041529	+	330	184200602	-	KRH_09560	-	putative ABC transporter substrate-binding protein
957	 69.04	0	1041535..1042503	+	322	184200603	-	KRH_09570	-	putative ABC transporter permease protein
958	 69.97	0	1042508..1043416	+	302	184200604	-	KRH_09580	-	putative ABC transporter ATP-binding protein
959	 69.82	0	1043413..1043793	+	126	184200605	-	KRH_09590	-	hypothetical protein
960	 61.45	-2	1044204..1044836	-	210	184200606	-	KRH_09600	-	hypothetical protein
961	 62.44	-2	1044833..1045045	-	70	184200607	-	KRH_09610	-	hypothetical protein
962	 70.98	0	1045714..1047384	+	556	184200608	argS	KRH_09620	-	arginyl-tRNA synthetase
963	 73.76	0	1047389..1048840	+	483	184200609	lysA	KRH_09630	-	diaminopimelate decarboxylase
964	 74.03	0	1049194..1050510	+	438	184200610	hom	KRH_09640	-	homoserine dehydrogenase
965	 71.62	0	1050626..1051735	+	369	184200611	thrC	KRH_09650	-	threonine synthase
966	 75.84	+1	1051762..1052742	+	326	184200612	thrB	KRH_09660	-	homoserine kinase
967	 70.43	0	1053037..1055190	+	717	184200613	rho	KRH_09670	-	transcription termination factor Rho
968	 71.26	0	1055243..1056352	+	369	184200614	prfA	KRH_09680	-	peptide chain release factor 1
969	 76.21	+1	1056357..1057226	+	289	184200615	hemK	KRH_09690	-	protein methyltransferase HemK
970	 76.06	+1	1057333..1058397	+	354	184200616	-	KRH_09700	-	hypothetical protein
971	 74.41	0	1058663..1059631	-	322	184200617	-	KRH_09710	-	NAD-dependent epimerase/dehydratase family protein
972	 71.17	0	1059852..1060784	+	310	184200618	-	KRH_09720	-	putative glycosyltransferase
973	 74.45	0	1060771..1061631	+	286	184200619	-	KRH_09730	-	putative glycosyltransferase
974	 70.43	0	1061661..1063682	+	673	184200620	-	KRH_09740	-	putative polysaccharide biosynthesis protein
975	 73.22	0	1063907..1064929	+	340	184200621	-	KRH_09750	-	putative undecaprenyl-phosphate glycosyltransferase
976	 77.64	+1	1064926..1065408	+	160	184200622	-	KRH_09760	-	hypothetical protein
977	 70.08	0	1065405..1065785	+	126	184200623	-	KRH_09770	-	hypothetical protein
978	 62.63	-2	1065816..1066607	+	263	184200624	atpB	KRH_09780	-	ATP synthase subunit a
979	 63.73	-1	1066722..1066925	+	67	184200625	atpE	KRH_09790	-	ATP synthase subunit c
980	 64.06	-1	1066986..1067522	+	178	184200626	atpF	KRH_09800	-	ATP synthase subunit b
981	 71.83	0	1067522..1068334	+	270	184200627	atpH	KRH_09810	-	ATP synthase subunit delta
982	 67.71	0	1068506..1070131	+	541	184200628	atpA	KRH_09820	-	ATP synthase subunit alpha
983	 66.12	-1	1070189..1071100	+	303	184200629	atpG	KRH_09830	-	ATP synthase gamma chain
984	 66.46	-1	1071143..1072609	+	488	184200630	atpD	KRH_09840	-	ATP synthase subunit beta
985	 69.53	0	1072613..1072891	+	92	184200631	atpC	KRH_09850	-	ATP synthase epsilon chain
986	 72.43	0	1073037..1074320	+	427	184200632	murA	KRH_09860	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
987	 63.24	-2	1074468..1074671	-	67	184200633	-	KRH_09870	-	cold shock protein
988	 68.39	0	1075035..1075730	-	231	184200634	-	KRH_09880	-	hypothetical protein
989	 75.27	+1	1075775..1075960	+	61	184200635	-	KRH_09890	-	hypothetical protein
990	 70.64	0	1076060..1077241	-	393	184200636	-	KRH_09900	-	hypothetical protein
991	 75.17	+1	1077509..1078402	+	297	184200637	-	KRH_09910	-	hypothetical protein
992	 73.01	0	1078488..1079465	+	325	184200638	-	KRH_09920	-	putative ABC transporter ATP-binding protein
993	 73.05	0	1079663..1081291	+	542	184200639	-	KRH_09930	-	hypothetical protein
994	 68.41	0	1081324..1081668	+	114	184200640	-	KRH_09940	-	hypothetical protein
995	 71.88	0	1082040..1083881	+	613	184200641	-	KRH_09950	-	hypothetical protein
996	 72.49	0	1083982..1084599	-	205	184200642	pncA	KRH_09960	-	pyrazinamidase/nicotinamidase
997	 73.02	0	1084614..1085951	-	445	184200643	pncB	KRH_09970	-	putative nicotinate phosphoribosyltransferase
998	 69.23	0	1086017..1086367	+	116	184200644	clpS	KRH_09980	-	ATP-dependent Clp protease adaptor protein ClpS
999	 72.01	0	1086367..1086927	+	186	184200645	-	KRH_09990	-	hypothetical protein
1000	 70.47	0	1086996..1087889	+	297	184200646	murI	KRH_10000	-	glutamate racemase
1001	 72.02	0	1087915..1088754	+	279	184200647	-	KRH_10010	-	hypothetical protein
1002	 72.11	0	1088840..1089574	+	244	184200648	rph	KRH_10020	-	ribonuclease PH
1003	 76.84	+1	1089564..1090241	+	225	184200649	-	KRH_10030	-	nucleoside-triphosphatase
1004	 72.24	0	1090245..1091105	+	286	184200650	-	KRH_10040	-	hypothetical protein
1005	 72.85	0	1091147..1091728	+	193	184200651	dnaQ	KRH_10050	-	putative DNA polymerase III epsilon subunit
1006	 75.93	+1	1091810..1092856	-	348	184200652	-	KRH_10060	-	hypothetical protein
1007	 69.10	0	1092929..1093708	-	259	184200653	-	KRH_10070	-	hypothetical protein
1008	 64.22	-1	1094038..1094853	-	271	184200654	-	KRH_10080	-	hypothetical protein
1009	 72.39	0	1095112..1096335	+	407	184200655	sbcD	KRH_10090	-	nuclease SbcCD subunit D
1010	 74.20	0	1096332..1099571	+	1079	184200656	sbcC	KRH_10100	-	nuclease SbcCD subunit C
1011	 72.98	0	1099582..1100865	+	427	184200657	-	KRH_10110	-	hypothetical protein
1012	 70.18	0	1101175..1101858	-	227	184200658	-	KRH_10120	-	hypothetical protein
1013	 71.31	0	1101855..1102952	-	365	184200659	-	KRH_10130	-	mycothiol-dependent formaldehyde dehydrogenase
1014	 67.91	0	1103381..1104583	-	400	184200660	-	KRH_10140	-	hypothetical protein
1015	 68.68	0	1104674..1105120	-	148	184200661	-	KRH_10150	-	MarR family transcriptional regulator
1016	 68.22	0	1105323..1106807	-	494	184200662	mqo	KRH_10160	-	putative malate--quinone oxidoreductase
1017	 72.51	0	1106918..1108525	-	535	184200663	-	KRH_10170	-	putative ABC transporter substrate-binding protein
1018	 72.36	0	1108785..1109258	-	157	184200664	bcp	KRH_10180	-	hydroperoxide peroxidase
1019	 71.40	0	1109500..1110048	+	182	184200665	-	KRH_10190	-	MarR family transcriptional regulator
1020	 73.25	0	1110557..1111528	+	323	184200666	-	KRH_10200	-	putative dehydrogenase
1021	 70.39	0	1111797..1113674	+	625	184200667	ilvB	KRH_10210	-	acetolactate synthase large subunit
1022	 68.63	0	1113678..1114187	+	169	184200668	ilvN	KRH_10220	-	acetolactate synthase small subunit
1023	 67.54	0	1114303..1115328	+	341	184200669	ilvC	KRH_10230	-	ketol-acid reductoisomerase
1024	 69.24	0	1115557..1117110	+	517	184200670	metG	KRH_10240	-	methionyl-tRNA synthetase
1025	 71.11	0	1117457..1118536	+	359	184200671	leuB	KRH_10250	-	3-isopropylmalate dehydrogenase
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.