IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
853	 76.08	+1	920621..921565	+	314	184200499	hemC	KRH_08530	-	porphobilinogen deaminase
854	 77.75	+1	921562..922707	+	381	184200500	-	KRH_08540	-	hypothetical protein
855	 70.85	0	922740..923744	+	334	184200501	hemB	KRH_08550	-	delta-aminolevulinic acid dehydratase
856	 72.50	0	923816..925135	+	439	184200502	hemL	KRH_08560	-	glutamate-1-semialdehyde aminotransferase
857	 75.11	+1	925254..925952	-	232	184200503	dnaQ	KRH_08570	-	putative DNA polymerase III epsilon subunit
858	 75.07	+1	926400..930125	+	1241	184200504	-	KRH_08580	-	UvrD/REP helicase family protein
859	 73.39	0	930122..933559	+	1145	184200505	-	KRH_08590	-	UvrD/REP helicase family protein
860	 75.70	+1	933508..934902	-	464	184200506	-	KRH_08600	-	hypothetical protein
861	 74.77	0	934943..935917	+	324	184200507	nudC	KRH_08610	-	putative NADH pyrophosphatase
862	 73.26	0	935914..937704	+	596	184200508	-	KRH_08620	-	putative ATP-dependent DNA helicase
863	 73.72	0	937823..938644	-	273	184200509	-	KRH_08630	-	putative hydrolase
864	 71.60	0	938641..940119	-	492	184200510	-	KRH_08640	-	monooxygenase
865	 75.00	+1	940430..941437	+	335	184200511	-	KRH_08650	-	LacI family transcriptional regulator
866	 77.92	+1	941583..942488	-	301	184200512	-	KRH_08660	-	hypothetical protein
867	 74.12	0	942638..943174	+	178	184200513	-	KRH_08670	-	hypothetical protein
868	 70.82	0	943515..945008	-	497	184200514	-	KRH_08680	-	hypothetical protein
869	 72.99	0	945531..946652	+	373	184200515	-	KRH_08690	-	hypothetical protein
870	 67.62	0	946757..949708	+	983	184200516	-	KRH_08700	-	hypothetical protein
871	 72.55	0	950260..951858	-	532	184200517	-	KRH_08710	-	hypothetical protein
872	 67.46	0	951861..952616	-	251	184200518	-	KRH_08720	-	hypothetical protein
873	 74.39	0	952686..954704	-	672	184200519	-	KRH_08730	-	hypothetical protein
874	 72.62	0	954952..956580	+	542	184200520	-	KRH_08740	-	putative protease Do
875	 70.75	0	956692..957156	-	154	184200521	-	KRH_08750	-	putative RNA methyltransferase
876	 75.02	+1	957274..958506	+	410	184200522	iscS	KRH_08760	-	cysteine desulfurase
877	 73.18	0	958590..959741	+	383	184200523	-	KRH_08770	-	putative tRNA uridine-sulfurtransferase
878	 71.01	0	959804..960217	+	137	184200524	-	KRH_08780	-	chorismate mutase
879	 77.32	+1	960214..961236	+	340	184200525	-	KRH_08790	-	hypothetical protein
880	 68.27	0	961325..962011	+	228	184200526	mtrA	KRH_08800	-	two-component response regulator MtrA
881	 70.48	0	962008..963870	+	620	184200527	mtrB	KRH_08810	-	two-component sensor histidine kinase MtrB
882	 71.56	0	963867..965666	+	599	184200528	-	KRH_08820	-	hypothetical protein
883	 78.33	+1	966118..966906	+	262	184200529	-	KRH_08830	-	hypothetical protein
884	 68.39	0	967034..967729	+	231	184200530	-	KRH_08840	-	hypothetical protein
885	 68.89	0	967881..970664	+	927	184200531	secA	KRH_08850	-	preprotein translocase SecA subunit
886	 74.00	0	970677..971126	-	149	184200532	-	KRH_08860	-	hypothetical protein
887	 75.23	+1	971272..972159	-	295	184200533	-	KRH_08870	-	hypothetical protein
888	 73.90	0	972459..973025	+	188	184200534	-	KRH_08880	-	hypothetical protein
889	 70.37	0	973027..973242	-	71	184200535	-	KRH_08890	-	hypothetical protein
890	 74.07	0	973472..974146	+	224	184200536	-	KRH_08900	-	hypothetical protein
891	 77.19	+1	974143..975786	+	547	184200537	-	KRH_08910	-	hypothetical protein
892	 72.29	0	975808..977391	+	527	184200538	-	KRH_08920	-	two-component histidine kinase
893	 70.67	0	977557..977856	-	99	184200539	-	KRH_08930	-	WhiB family regulatory protein
894	 73.15	0	978107..978538	+	143	184200540	-	KRH_08940	-	hypothetical protein
895	 77.14	+1	978562..983163	-	1533	184200541	-	KRH_08950	-	hypothetical protein
896	 72.59	0	983216..984397	+	393	184200542	-	KRH_08960	-	putative glycosyltransferase
897	 64.65	-1	984560..985747	+	395	184200543	glf	KRH_08970	-	UDP-galactopyranose mutase
898	 67.40	0	985876..987780	+	634	184200544	glfT	KRH_08980	-	UDP-galactofuranosyl transferase
899	 61.59	-2	987888..988754	+	288	184200545	-	KRH_08990	-	putative ABC transporter permease protein
900	 64.40	-1	988758..989684	+	308	184200546	-	KRH_09000	-	putative ABC transporter ATP-binding protein
901	 69.32	0	989765..991798	-	677	184200547	-	KRH_09010	-	hypothetical protein
902	 67.12	0	991962..992627	+	221	184200548	-	KRH_09020	-	putative glycosyltransferase
903	 72.29	0	992643..993122	+	159	184200549	-	KRH_09030	-	hypothetical protein
904	 69.76	0	993332..993622	+	96	184200550	-	KRH_09040	-	hypothetical protein
905	 65.36	-1	993691..994377	+	228	184200551	-	KRH_09050	-	hypothetical protein
906	 61.90	-2	994462..994797	-	111	184200552	-	KRH_09060	-	hypothetical protein
907	 65.94	-1	995145..995696	-	183	184200553	-	KRH_09070	-	hypothetical protein
908	 64.57	-1	995757..996185	-	142	184200554	-	KRH_09080	-	hypothetical protein
909	 67.46	0	996276..998804	-	842	184200555	-	KRH_09090	-	hypothetical protein
910	 61.40	-2	999068..999238	+	56	184200556	-	KRH_09100	-	hypothetical protein
911	 67.61	0	999292..999924	-	210	184200557	-	KRH_09110	-	putative resolvase
912	 67.11	0	1000141..1000365	-	74	184200558	-	KRH_09120	-	hypothetical protein
913	 69.67	0	1000443..1001141	-	232	184200559	-	KRH_09130	-	hypothetical protein
914	 66.13	-1	1001125..1001496	-	123	184200560	-	KRH_09140	-	hypothetical protein
915	 71.93	0	1001501..1001671	-	56	184200561	-	KRH_09150	-	hypothetical protein
916	 65.60	-1	1001668..1001949	-	93	184200562	-	KRH_09160	-	hypothetical protein
917	 73.33	0	1001981..1002190	-	69	184200563	-	KRH_09170	-	hypothetical protein
918	 59.90	-2	1002373..1002579	-	68	184200564	-	KRH_09180	-	hypothetical protein
919	 66.94	-1	1002774..1003880	-	368	184200565	-	KRH_09190	-	hypothetical protein
920	 68.10	0	1003877..1004782	-	301	184200566	-	KRH_09200	-	hypothetical protein
921	 69.87	0	1004779..1004934	-	51	184200567	-	KRH_09210	-	hypothetical protein
922	 67.02	-1	1005330..1005899	-	189	184200568	-	KRH_09220	-	hypothetical protein
923	 68.33	0	1005896..1007281	-	461	184200569	-	KRH_09230	-	putative recombinase
924	 73.21	0	1007324..1008469	+	381	184200570	-	KRH_09240	-	hypothetical protein
925	 74.01	0	1008466..1009323	+	285	184200571	-	KRH_09250	-	hypothetical protein
926	 73.23	0	1009320..1010264	+	314	184200572	-	KRH_09260	-	hypothetical protein
927	 71.11	0	1010306..1010530	+	74	184200573	-	KRH_09270	-	hypothetical protein
928	 70.66	0	1010562..1010912	+	116	184200574	-	KRH_09280	-	hypothetical protein
929	 75.32	+1	1010890..1011444	+	184	184200575	-	KRH_09290	-	hypothetical protein
930	 75.47	+1	1011534..1012010	+	158	184200576	-	KRH_09300	-	hypothetical protein
931	 74.44	0	1012249..1012608	+	119	184200577	-	KRH_09310	-	hypothetical protein
932	 76.97	+1	1012803..1012967	-	54	184200578	-	KRH_09320	-	hypothetical protein
933	 69.65	0	1012995..1014167	-	390	184200579	glgC	KRH_09330	-	glucose-1-phosphate adenylyltransferase
934	 67.83	0	1014252..1015370	+	372	184200580	prfB	KRH_09340	-	peptide chain release factor 2
935	 67.89	0	1015445..1015933	+	162	184200581	smpB	KRH_09350	-	SsrA-binding protein
936	 75.38	+1	1015946..1016737	-	263	184200582	-	KRH_09360	-	putative ABC transporter ATP-binding protein
937	 71.92	0	1017590..1018465	+	291	184200583	-	KRH_09370	-	hypothetical protein
938	 71.91	0	1018590..1019390	-	266	184200584	hisN	KRH_09380	-	histidinol-phosphate phosphatase
939	 74.82	+1	1019395..1020510	-	371	184200585	-	KRH_09390	-	putative GTPase
940	 75.11	+1	1020515..1021852	-	445	184200586	aroA	KRH_09400	-	3-phosphoshikimate 1-carboxyvinyltransferase
941	 71.32	0	1021867..1022403	-	178	184200587	-	KRH_09410	-	hypothetical protein
942	 67.25	0	1022612..1023292	+	226	184200588	-	KRH_09420	-	RNA polymerase ECF-type sigma factor
943	 67.04	-1	1023296..1023562	+	88	184200589	-	KRH_09430	-	anti-sigma factor
944	 69.67	0	1023882..1024481	-	199	184200590	-	KRH_09440	-	hypothetical protein
945	 69.12	0	1024611..1028435	-	1274	184200591	sucA	KRH_09450	-	2-oxoglutarate dehydrogenase E1 component
946	 83.06	+2	1028679..1028861	+	60	184200592	-	KRH_09460	-	hypothetical protein
947	 73.25	0	1028959..1030416	+	485	184200593	-	KRH_09470	-	putative inosine-5'-monophosphate dehydrogenase
948	 71.57	0	1030543..1031520	+	325	184200594	-	KRH_09480	-	putative ABC transporter substrate-binding protein
949	 73.79	0	1031534..1032418	+	294	184200595	-	KRH_09490	-	putative ABC transporter ATP-binding protein
950	 70.70	0	1032415..1033332	+	305	184200596	-	KRH_09500	-	putative ABC transporter permease protein
951	 76.04	+1	1033397..1034356	-	319	184200597	-	KRH_09510	-	hypothetical protein
952	 71.14	0	1034353..1034799	-	148	184200598	-	KRH_09520	-	Fur family transcriptional regulator
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.