IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
813	 72.33	0	877893..879500	+	535	184200459	gatA	KRH_08130	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
814	 68.92	0	879500..881005	+	501	184200460	gatB	KRH_08140	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
815	 74.02	0	881313..882617	-	434	184200461	-	KRH_08150	-	hypothetical protein
816	 73.55	0	882766..883608	+	280	184200462	-	KRH_08160	-	hypothetical protein
817	 70.97	0	883731..884009	-	92	184200463	-	KRH_08170	-	hypothetical protein
818	 71.30	0	884197..884520	-	107	184200464	-	KRH_08180	-	branched-chain amino acid export protein small subunit
819	 70.18	0	884501..885211	-	236	184200465	-	KRH_08190	-	branched-chain amino acid export protein large subunit
820	 73.61	0	885319..887334	+	671	184200466	-	KRH_08200	-	S9C family peptidase
821	 68.19	0	887562..889469	+	635	184200467	typA	KRH_08210	-	putative GTP-binding protein TypA
822	 75.18	+1	889544..890377	+	277	184200468	mshB	KRH_08220	-	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB
823	 75.08	+1	890374..891027	+	217	184200469	-	KRH_08230	-	hypothetical protein
824	 65.74	-1	891090..891413	+	107	184200470	-	KRH_08240	-	ferredoxin
825	 73.82	0	891418..892563	+	381	184200471	-	KRH_08250	-	aminotransferase
826	 63.86	-1	892684..894039	+	451	184200472	gltA	KRH_08260	-	citrate synthase
827	 69.91	0	894219..895235	-	338	184200473	galE	KRH_08270	-	UDP-glucose 4-epimerase
828	 72.74	0	895499..896470	-	323	184200474	dapD	KRH_08280	-	tetrahydrodipicolinate N-succinyltransferase
829	 72.18	0	896595..897701	+	368	184200475	dapE	KRH_08290	-	succinyl-diaminopimelate desuccinylase
830	 72.35	0	897723..898601	+	292	184200476	-	KRH_08300	-	hypothetical protein
831	 76.88	+1	898598..900076	+	492	184200477	-	KRH_08310	-	hypothetical protein
832	 67.86	0	900242..900409	+	55	184200478	-	KRH_08320	-	hypothetical protein
833	 75.54	+1	900630..901001	-	123	184200479	-	KRH_08330	-	chromosome condensation/camphor resistance protein CrcB
834	 75.34	+1	900998..901435	-	145	184200480	-	KRH_08340	-	chromosome condensation/camphor resistance protein CrcB
835	 74.41	0	901432..902064	-	210	184200481	-	KRH_08350	-	hypothetical protein
836	 74.50	0	902357..903007	+	216	184200482	-	KRH_08360	-	hypothetical protein
837	 70.90	0	903046..903399	+	117	184200483	tatB	KRH_08370	-	putative Sec-independent protein translocase protein TatB
838	 74.69	0	903419..904615	-	398	184200484	-	KRH_08380	-	hypothetical protein
839	 73.19	0	904612..905424	-	270	184200485	-	KRH_08390	-	hypothetical protein
840	 70.05	0	905417..906715	-	432	184200486	-	KRH_08400	-	hypothetical protein
841	 73.45	0	906874..907875	+	333	184200487	-	KRH_08410	-	hypothetical protein
842	 70.90	0	907973..909580	-	535	184200488	pepP	KRH_08420	-	putative Xaa-Pro aminopeptidase
843	 72.54	0	909697..910548	+	283	184200489	-	KRH_08430	-	hypothetical protein
844	 70.80	0	910558..911427	-	289	184200490	-	KRH_08440	-	putative methyltransferase
845	 72.30	0	911433..913100	-	555	184200491	-	KRH_08450	-	putative DEAD-box RNA helicase
846	 69.33	0	913419..913718	-	99	184200492	-	KRH_08460	-	hypothetical protein
847	 70.21	0	913742..914419	-	225	184200493	-	KRH_08470	-	TetR family transcriptional regulator
848	 74.51	0	914452..915765	-	437	184200494	hemA	KRH_08480	-	glutamyl-tRNA reductase
849	 76.31	+1	915894..917117	+	407	184200495	hemE	KRH_08490	-	uroporphyrinogen decarboxylase
850	 76.48	+1	917114..918601	+	495	184200496	-	KRH_08500	-	putative protoporphyrinogen oxidase
851	 70.15	0	918701..919417	+	238	184200497	-	KRH_08510	-	hypothetical protein
852	 71.81	0	919419..920624	+	401	184200498	hemH	KRH_08520	-	ferrochelatase
853	 76.08	+1	920621..921565	+	314	184200499	hemC	KRH_08530	-	porphobilinogen deaminase
854	 77.75	+1	921562..922707	+	381	184200500	-	KRH_08540	-	hypothetical protein
855	 70.85	0	922740..923744	+	334	184200501	hemB	KRH_08550	-	delta-aminolevulinic acid dehydratase
856	 72.50	0	923816..925135	+	439	184200502	hemL	KRH_08560	-	glutamate-1-semialdehyde aminotransferase
857	 75.11	+1	925254..925952	-	232	184200503	dnaQ	KRH_08570	-	putative DNA polymerase III epsilon subunit
858	 75.07	+1	926400..930125	+	1241	184200504	-	KRH_08580	-	UvrD/REP helicase family protein
859	 73.39	0	930122..933559	+	1145	184200505	-	KRH_08590	-	UvrD/REP helicase family protein
860	 75.70	+1	933508..934902	-	464	184200506	-	KRH_08600	-	hypothetical protein
861	 74.77	0	934943..935917	+	324	184200507	nudC	KRH_08610	-	putative NADH pyrophosphatase
862	 73.26	0	935914..937704	+	596	184200508	-	KRH_08620	-	putative ATP-dependent DNA helicase
863	 73.72	0	937823..938644	-	273	184200509	-	KRH_08630	-	putative hydrolase
864	 71.60	0	938641..940119	-	492	184200510	-	KRH_08640	-	monooxygenase
865	 75.00	+1	940430..941437	+	335	184200511	-	KRH_08650	-	LacI family transcriptional regulator
866	 77.92	+1	941583..942488	-	301	184200512	-	KRH_08660	-	hypothetical protein
867	 74.12	0	942638..943174	+	178	184200513	-	KRH_08670	-	hypothetical protein
868	 70.82	0	943515..945008	-	497	184200514	-	KRH_08680	-	hypothetical protein
869	 72.99	0	945531..946652	+	373	184200515	-	KRH_08690	-	hypothetical protein
870	 67.62	0	946757..949708	+	983	184200516	-	KRH_08700	-	hypothetical protein
871	 72.55	0	950260..951858	-	532	184200517	-	KRH_08710	-	hypothetical protein
872	 67.46	0	951861..952616	-	251	184200518	-	KRH_08720	-	hypothetical protein
873	 74.39	0	952686..954704	-	672	184200519	-	KRH_08730	-	hypothetical protein
874	 72.62	0	954952..956580	+	542	184200520	-	KRH_08740	-	putative protease Do
875	 70.75	0	956692..957156	-	154	184200521	-	KRH_08750	-	putative RNA methyltransferase
876	 75.02	+1	957274..958506	+	410	184200522	iscS	KRH_08760	-	cysteine desulfurase
877	 73.18	0	958590..959741	+	383	184200523	-	KRH_08770	-	putative tRNA uridine-sulfurtransferase
878	 71.01	0	959804..960217	+	137	184200524	-	KRH_08780	-	chorismate mutase
879	 77.32	+1	960214..961236	+	340	184200525	-	KRH_08790	-	hypothetical protein
880	 68.27	0	961325..962011	+	228	184200526	mtrA	KRH_08800	-	two-component response regulator MtrA
881	 70.48	0	962008..963870	+	620	184200527	mtrB	KRH_08810	-	two-component sensor histidine kinase MtrB
882	 71.56	0	963867..965666	+	599	184200528	-	KRH_08820	-	hypothetical protein
883	 78.33	+1	966118..966906	+	262	184200529	-	KRH_08830	-	hypothetical protein
884	 68.39	0	967034..967729	+	231	184200530	-	KRH_08840	-	hypothetical protein
885	 68.89	0	967881..970664	+	927	184200531	secA	KRH_08850	-	preprotein translocase SecA subunit
886	 74.00	0	970677..971126	-	149	184200532	-	KRH_08860	-	hypothetical protein
887	 75.23	+1	971272..972159	-	295	184200533	-	KRH_08870	-	hypothetical protein
888	 73.90	0	972459..973025	+	188	184200534	-	KRH_08880	-	hypothetical protein
889	 70.37	0	973027..973242	-	71	184200535	-	KRH_08890	-	hypothetical protein
890	 74.07	0	973472..974146	+	224	184200536	-	KRH_08900	-	hypothetical protein
891	 77.19	+1	974143..975786	+	547	184200537	-	KRH_08910	-	hypothetical protein
892	 72.29	0	975808..977391	+	527	184200538	-	KRH_08920	-	two-component histidine kinase
893	 70.67	0	977557..977856	-	99	184200539	-	KRH_08930	-	WhiB family regulatory protein
894	 73.15	0	978107..978538	+	143	184200540	-	KRH_08940	-	hypothetical protein
895	 77.14	+1	978562..983163	-	1533	184200541	-	KRH_08950	-	hypothetical protein
896	 72.59	0	983216..984397	+	393	184200542	-	KRH_08960	-	putative glycosyltransferase
897	 64.65	-1	984560..985747	+	395	184200543	glf	KRH_08970	-	UDP-galactopyranose mutase
898	 67.40	0	985876..987780	+	634	184200544	glfT	KRH_08980	-	UDP-galactofuranosyl transferase
899	 61.59	-2	987888..988754	+	288	184200545	-	KRH_08990	-	putative ABC transporter permease protein
900	 64.40	-1	988758..989684	+	308	184200546	-	KRH_09000	-	putative ABC transporter ATP-binding protein
901	 69.32	0	989765..991798	-	677	184200547	-	KRH_09010	-	hypothetical protein
902	 67.12	0	991962..992627	+	221	184200548	-	KRH_09020	-	putative glycosyltransferase
903	 72.29	0	992643..993122	+	159	184200549	-	KRH_09030	-	hypothetical protein
904	 69.76	0	993332..993622	+	96	184200550	-	KRH_09040	-	hypothetical protein
905	 65.36	-1	993691..994377	+	228	184200551	-	KRH_09050	-	hypothetical protein
906	 61.90	-2	994462..994797	-	111	184200552	-	KRH_09060	-	hypothetical protein
907	 65.94	-1	995145..995696	-	183	184200553	-	KRH_09070	-	hypothetical protein
908	 64.57	-1	995757..996185	-	142	184200554	-	KRH_09080	-	hypothetical protein
909	 67.46	0	996276..998804	-	842	184200555	-	KRH_09090	-	hypothetical protein
910	 61.40	-2	999068..999238	+	56	184200556	-	KRH_09100	-	hypothetical protein
911	 67.61	0	999292..999924	-	210	184200557	-	KRH_09110	-	putative resolvase
912	 67.11	0	1000141..1000365	-	74	184200558	-	KRH_09120	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.