IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
781	 61.69	-2	845532..845732	+	66	184200427	-	KRH_07810	-	hypothetical protein
782	 73.89	0	845748..846785	-	345	184200428	selD	KRH_07820	-	selenide, water dikinase
783	 78.13	+1	847192..848499	+	435	184200429	selA	KRH_07830	-	selenocysteine synthase
784	 75.89	+1	848499..850286	+	595	184200430	selB	KRH_07840	-	selenocysteine-specific elongation factor
785	 71.25	0	850490..850816	+	108	184200431	-	KRH_07850	-	hypothetical protein
786	 73.54	0	850987..851466	+	159	184200432	-	KRH_07860	-	hypothetical protein
787	 71.85	0	851533..852516	+	327	184200433	-	KRH_07870	-	putative hydrolase
788	 74.40	0	852513..853430	+	305	184200434	-	KRH_07880	-	hypothetical protein
789	 74.52	0	853686..854258	+	190	184200435	mug	KRH_07890	-	G/U mismatch-specific DNA glycosylase
790	 71.66	0	854336..855217	+	293	184200436	-	KRH_07900	-	hypothetical protein
791	 75.35	+1	855357..856715	-	452	184200437	-	KRH_07910	-	putative carboxylesterase
792	 71.88	0	856708..857148	-	146	184200438	-	KRH_07920	-	hypothetical protein
793	 73.36	0	857259..857945	+	228	184200439	-	KRH_07930	-	hypothetical protein
794	 70.26	0	858245..859135	+	296	184200440	-	KRH_07940	-	hypothetical protein
795	 72.00	0	859201..859875	+	224	184200441	-	KRH_07950	-	hypothetical protein
796	 75.50	+1	860135..860983	+	282	184200442	-	KRH_07960	-	uracil-DNA glycosylase
797	 77.55	+1	861108..861254	+	48	184200443	-	KRH_07970	-	hypothetical protein
798	 73.13	0	861349..861735	+	128	184200444	-	KRH_07980	-	hypothetical protein
799	 70.52	0	861895..862413	+	172	184200445	-	KRH_07990	-	hypothetical protein
800	 66.31	-1	862777..863340	-	187	184200446	-	KRH_08000	-	hypothetical protein
801	 71.94	0	863659..864645	-	328	184200447	mdh	KRH_08010	-	malate dehydrogenase
802	 69.68	0	864784..865281	+	165	184200448	tpx	KRH_08020	-	thiol peroxidase
803	 68.47	0	865521..867734	-	737	184200449	icd	KRH_08030	-	isocitrate dehydrogenase
804	 72.44	0	867853..868302	-	149	184200450	-	KRH_08040	-	hypothetical protein
805	 62.58	-2	868740..870527	+	595	184200451	-	KRH_08050	-	putative peptide ABC transporter peptide-binding protein
806	 66.67	-1	870637..872172	+	511	184200452	-	KRH_08060	-	putative peptide ABC transporter permease protein
807	 69.18	0	872169..873242	+	357	184200453	-	KRH_08070	-	putative peptide ABC transporter permease protein
808	 74.61	0	873254..873895	-	213	184200454	-	KRH_08080	-	hypothetical protein
809	 70.39	0	874402..876147	+	581	184200455	-	KRH_08090	-	putative ABC transporter ATP-binding protein
810	 73.39	0	876236..876934	+	232	184200456	-	KRH_08100	-	hypothetical protein
811	 72.22	0	876953..877438	-	161	184200457	-	KRH_08110	-	hypothetical protein
812	 69.36	0	877600..877896	+	98	184200458	gatC	KRH_08120	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
813	 72.33	0	877893..879500	+	535	184200459	gatA	KRH_08130	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
814	 68.92	0	879500..881005	+	501	184200460	gatB	KRH_08140	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
815	 74.02	0	881313..882617	-	434	184200461	-	KRH_08150	-	hypothetical protein
816	 73.55	0	882766..883608	+	280	184200462	-	KRH_08160	-	hypothetical protein
817	 70.97	0	883731..884009	-	92	184200463	-	KRH_08170	-	hypothetical protein
818	 71.30	0	884197..884520	-	107	184200464	-	KRH_08180	-	branched-chain amino acid export protein small subunit
819	 70.18	0	884501..885211	-	236	184200465	-	KRH_08190	-	branched-chain amino acid export protein large subunit
820	 73.61	0	885319..887334	+	671	184200466	-	KRH_08200	-	S9C family peptidase
821	 68.19	0	887562..889469	+	635	184200467	typA	KRH_08210	-	putative GTP-binding protein TypA
822	 75.18	+1	889544..890377	+	277	184200468	mshB	KRH_08220	-	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB
823	 75.08	+1	890374..891027	+	217	184200469	-	KRH_08230	-	hypothetical protein
824	 65.74	-1	891090..891413	+	107	184200470	-	KRH_08240	-	ferredoxin
825	 73.82	0	891418..892563	+	381	184200471	-	KRH_08250	-	aminotransferase
826	 63.86	-1	892684..894039	+	451	184200472	gltA	KRH_08260	-	citrate synthase
827	 69.91	0	894219..895235	-	338	184200473	galE	KRH_08270	-	UDP-glucose 4-epimerase
828	 72.74	0	895499..896470	-	323	184200474	dapD	KRH_08280	-	tetrahydrodipicolinate N-succinyltransferase
829	 72.18	0	896595..897701	+	368	184200475	dapE	KRH_08290	-	succinyl-diaminopimelate desuccinylase
830	 72.35	0	897723..898601	+	292	184200476	-	KRH_08300	-	hypothetical protein
831	 76.88	+1	898598..900076	+	492	184200477	-	KRH_08310	-	hypothetical protein
832	 67.86	0	900242..900409	+	55	184200478	-	KRH_08320	-	hypothetical protein
833	 75.54	+1	900630..901001	-	123	184200479	-	KRH_08330	-	chromosome condensation/camphor resistance protein CrcB
834	 75.34	+1	900998..901435	-	145	184200480	-	KRH_08340	-	chromosome condensation/camphor resistance protein CrcB
835	 74.41	0	901432..902064	-	210	184200481	-	KRH_08350	-	hypothetical protein
836	 74.50	0	902357..903007	+	216	184200482	-	KRH_08360	-	hypothetical protein
837	 70.90	0	903046..903399	+	117	184200483	tatB	KRH_08370	-	putative Sec-independent protein translocase protein TatB
838	 74.69	0	903419..904615	-	398	184200484	-	KRH_08380	-	hypothetical protein
839	 73.19	0	904612..905424	-	270	184200485	-	KRH_08390	-	hypothetical protein
840	 70.05	0	905417..906715	-	432	184200486	-	KRH_08400	-	hypothetical protein
841	 73.45	0	906874..907875	+	333	184200487	-	KRH_08410	-	hypothetical protein
842	 70.90	0	907973..909580	-	535	184200488	pepP	KRH_08420	-	putative Xaa-Pro aminopeptidase
843	 72.54	0	909697..910548	+	283	184200489	-	KRH_08430	-	hypothetical protein
844	 70.80	0	910558..911427	-	289	184200490	-	KRH_08440	-	putative methyltransferase
845	 72.30	0	911433..913100	-	555	184200491	-	KRH_08450	-	putative DEAD-box RNA helicase
846	 69.33	0	913419..913718	-	99	184200492	-	KRH_08460	-	hypothetical protein
847	 70.21	0	913742..914419	-	225	184200493	-	KRH_08470	-	TetR family transcriptional regulator
848	 74.51	0	914452..915765	-	437	184200494	hemA	KRH_08480	-	glutamyl-tRNA reductase
849	 76.31	+1	915894..917117	+	407	184200495	hemE	KRH_08490	-	uroporphyrinogen decarboxylase
850	 76.48	+1	917114..918601	+	495	184200496	-	KRH_08500	-	putative protoporphyrinogen oxidase
851	 70.15	0	918701..919417	+	238	184200497	-	KRH_08510	-	hypothetical protein
852	 71.81	0	919419..920624	+	401	184200498	hemH	KRH_08520	-	ferrochelatase
853	 76.08	+1	920621..921565	+	314	184200499	hemC	KRH_08530	-	porphobilinogen deaminase
854	 77.75	+1	921562..922707	+	381	184200500	-	KRH_08540	-	hypothetical protein
855	 70.85	0	922740..923744	+	334	184200501	hemB	KRH_08550	-	delta-aminolevulinic acid dehydratase
856	 72.50	0	923816..925135	+	439	184200502	hemL	KRH_08560	-	glutamate-1-semialdehyde aminotransferase
857	 75.11	+1	925254..925952	-	232	184200503	dnaQ	KRH_08570	-	putative DNA polymerase III epsilon subunit
858	 75.07	+1	926400..930125	+	1241	184200504	-	KRH_08580	-	UvrD/REP helicase family protein
859	 73.39	0	930122..933559	+	1145	184200505	-	KRH_08590	-	UvrD/REP helicase family protein
860	 75.70	+1	933508..934902	-	464	184200506	-	KRH_08600	-	hypothetical protein
861	 74.77	0	934943..935917	+	324	184200507	nudC	KRH_08610	-	putative NADH pyrophosphatase
862	 73.26	0	935914..937704	+	596	184200508	-	KRH_08620	-	putative ATP-dependent DNA helicase
863	 73.72	0	937823..938644	-	273	184200509	-	KRH_08630	-	putative hydrolase
864	 71.60	0	938641..940119	-	492	184200510	-	KRH_08640	-	monooxygenase
865	 75.00	+1	940430..941437	+	335	184200511	-	KRH_08650	-	LacI family transcriptional regulator
866	 77.92	+1	941583..942488	-	301	184200512	-	KRH_08660	-	hypothetical protein
867	 74.12	0	942638..943174	+	178	184200513	-	KRH_08670	-	hypothetical protein
868	 70.82	0	943515..945008	-	497	184200514	-	KRH_08680	-	hypothetical protein
869	 72.99	0	945531..946652	+	373	184200515	-	KRH_08690	-	hypothetical protein
870	 67.62	0	946757..949708	+	983	184200516	-	KRH_08700	-	hypothetical protein
871	 72.55	0	950260..951858	-	532	184200517	-	KRH_08710	-	hypothetical protein
872	 67.46	0	951861..952616	-	251	184200518	-	KRH_08720	-	hypothetical protein
873	 74.39	0	952686..954704	-	672	184200519	-	KRH_08730	-	hypothetical protein
874	 72.62	0	954952..956580	+	542	184200520	-	KRH_08740	-	putative protease Do
875	 70.75	0	956692..957156	-	154	184200521	-	KRH_08750	-	putative RNA methyltransferase
876	 75.02	+1	957274..958506	+	410	184200522	iscS	KRH_08760	-	cysteine desulfurase
877	 73.18	0	958590..959741	+	383	184200523	-	KRH_08770	-	putative tRNA uridine-sulfurtransferase
878	 71.01	0	959804..960217	+	137	184200524	-	KRH_08780	-	chorismate mutase
879	 77.32	+1	960214..961236	+	340	184200525	-	KRH_08790	-	hypothetical protein
880	 68.27	0	961325..962011	+	228	184200526	mtrA	KRH_08800	-	two-component response regulator MtrA
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.