IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
733	 65.70	-1	795771..796079	+	102	184200379	-	KRH_07330	-	hypothetical protein
734	 67.39	0	796304..796855	+	183	184200380	-	KRH_07340	-	hypothetical protein
735	 62.47	-2	796877..797830	-	317	184200381	-	KRH_07350	-	hypothetical protein
736	 59.41	-2	797820..798122	-	100	184200382	-	KRH_07360	-	hypothetical protein
737	 61.84	-2	798192..798419	-	75	184200383	-	KRH_07370	-	hypothetical protein
738	 66.67	-1	798498..799508	-	336	184200384	-	KRH_07380	-	putative transposase
739	 62.79	-2	799925..800956	+	343	184200385	-	KRH_07390	-	hypothetical protein
740	 58.16	-2	801343..803316	+	657	184200386	-	KRH_07400	-	hypothetical protein
741	 66.33	-1	803593..804486	-	297	184200387	-	KRH_07410	-	putative beta-lactamase inhibitory protein
742	 62.92	-2	805002..805241	-	79	184200388	-	KRH_07420	-	hypothetical protein
743	 62.41	-2	806127..806690	-	187	184200389	-	KRH_07430	-	hypothetical protein
744	 62.96	-2	806803..807018	+	71	184200390	-	KRH_07440	-	Xre family DNA-binding protein
745	 62.20	-2	807287..807532	+	81	184200391	-	KRH_07450	-	hypothetical protein
746	 58.78	-2	807483..811943	+	1486	184200392	-	KRH_07460	-	hypothetical protein
747	 62.46	-2	812559..813605	-	348	184200393	mcrC	KRH_07470	-	putative McrC protein
748	 60.16	-2	813602..815185	-	527	184200394	mcrB	KRH_07480	-	McrBC restriction endonuclease system protein McrB
749	 62.90	-2	815543..815728	+	61	184200395	-	KRH_07490	-	hypothetical protein
750	 67.02	-1	816194..817624	+	476	184200396	-	KRH_07500	-	DASS family transporter
751	 72.13	0	817713..818462	-	249	184200397	sdhB	KRH_07510	-	succinate dehydrogenase iron-sulfur protein
752	 71.89	0	818476..820467	-	663	184200398	sdhA	KRH_07520	-	succinate dehydrogenase flavoprotein subunit
753	 69.29	0	820464..821186	-	240	184200399	sdhC	KRH_07530	-	succinate dehydrogenase cytochrome b subunit
754	 68.81	0	821361..821966	-	201	184200400	-	KRH_07540	-	hypothetical protein
755	 69.98	0	822320..823918	+	532	184200401	-	KRH_07550	-	putative L-lactate permease
756	 66.67	-1	824033..824251	+	72	184200402	-	KRH_07560	-	hypothetical protein
757	 73.13	0	824368..825249	-	293	184200403	-	KRH_07570	-	hypothetical protein
758	 71.78	0	825343..826125	-	260	184200404	-	KRH_07580	-	putative hydrolase
759	 73.60	0	826334..826867	-	177	184200405	-	KRH_07590	-	hypothetical protein
760	 69.95	0	826887..827069	+	60	184200406	-	KRH_07600	-	hypothetical protein
761	 67.66	0	827223..828233	+	336	184200407	adh	KRH_07610	-	alcohol dehydrogenase
762	 68.91	0	828333..829001	-	222	184200408	-	KRH_07620	-	hypothetical protein
763	 70.83	0	829069..829668	+	199	184200409	-	KRH_07630	-	TetR family transcriptional regulator
764	 71.81	0	829791..831035	-	414	184200410	-	KRH_07640	-	putative esterase
765	 76.10	+1	831300..831935	-	211	184200411	-	KRH_07650	-	hypothetical protein
766	 65.43	-1	832331..832816	+	161	184200412	-	KRH_07660	-	hypothetical protein
767	 64.29	-1	832891..833100	+	69	184200413	-	KRH_07670	-	hypothetical protein
768	 70.79	0	833220..834044	-	274	184200414	-	KRH_07680	-	hypothetical protein
769	 73.67	0	834092..835291	+	399	184200415	-	KRH_07690	-	putative type III polyketide synthase
770	 76.04	+1	835291..836037	+	248	184200416	-	KRH_07700	-	hypothetical protein
771	 67.90	0	836058..836870	-	270	184200417	-	KRH_07710	-	hypothetical protein
772	 73.03	0	836874..837203	-	109	184200418	-	KRH_07720	-	hypothetical protein
773	 70.54	0	837308..837694	+	128	184200419	-	KRH_07730	-	hypothetical protein
774	 69.15	0	837688..838332	-	214	184200420	-	KRH_07740	-	hypothetical protein
775	 71.73	0	838467..839177	-	236	184200421	-	KRH_07750	-	hypothetical protein
776	 71.98	0	839427..839765	+	112	184200422	-	KRH_07760	-	hypothetical protein
777	 70.02	0	839821..840387	+	188	184200423	-	KRH_07770	-	formate dehydrogenase alpha subunit
778	 69.51	0	840457..843204	+	915	184200424	-	KRH_07780	-	formate dehydrogenase alpha subunit
779	 72.59	0	843201..844415	+	404	184200425	-	KRH_07790	-	putative formate dehydrogenase iron-sulfur subunit
780	 72.51	0	844412..845524	+	370	184200426	-	KRH_07800	-	hypothetical protein
781	 61.69	-2	845532..845732	+	66	184200427	-	KRH_07810	-	hypothetical protein
782	 73.89	0	845748..846785	-	345	184200428	selD	KRH_07820	-	selenide, water dikinase
783	 78.13	+1	847192..848499	+	435	184200429	selA	KRH_07830	-	selenocysteine synthase
784	 75.89	+1	848499..850286	+	595	184200430	selB	KRH_07840	-	selenocysteine-specific elongation factor
785	 71.25	0	850490..850816	+	108	184200431	-	KRH_07850	-	hypothetical protein
786	 73.54	0	850987..851466	+	159	184200432	-	KRH_07860	-	hypothetical protein
787	 71.85	0	851533..852516	+	327	184200433	-	KRH_07870	-	putative hydrolase
788	 74.40	0	852513..853430	+	305	184200434	-	KRH_07880	-	hypothetical protein
789	 74.52	0	853686..854258	+	190	184200435	mug	KRH_07890	-	G/U mismatch-specific DNA glycosylase
790	 71.66	0	854336..855217	+	293	184200436	-	KRH_07900	-	hypothetical protein
791	 75.35	+1	855357..856715	-	452	184200437	-	KRH_07910	-	putative carboxylesterase
792	 71.88	0	856708..857148	-	146	184200438	-	KRH_07920	-	hypothetical protein
793	 73.36	0	857259..857945	+	228	184200439	-	KRH_07930	-	hypothetical protein
794	 70.26	0	858245..859135	+	296	184200440	-	KRH_07940	-	hypothetical protein
795	 72.00	0	859201..859875	+	224	184200441	-	KRH_07950	-	hypothetical protein
796	 75.50	+1	860135..860983	+	282	184200442	-	KRH_07960	-	uracil-DNA glycosylase
797	 77.55	+1	861108..861254	+	48	184200443	-	KRH_07970	-	hypothetical protein
798	 73.13	0	861349..861735	+	128	184200444	-	KRH_07980	-	hypothetical protein
799	 70.52	0	861895..862413	+	172	184200445	-	KRH_07990	-	hypothetical protein
800	 66.31	-1	862777..863340	-	187	184200446	-	KRH_08000	-	hypothetical protein
801	 71.94	0	863659..864645	-	328	184200447	mdh	KRH_08010	-	malate dehydrogenase
802	 69.68	0	864784..865281	+	165	184200448	tpx	KRH_08020	-	thiol peroxidase
803	 68.47	0	865521..867734	-	737	184200449	icd	KRH_08030	-	isocitrate dehydrogenase
804	 72.44	0	867853..868302	-	149	184200450	-	KRH_08040	-	hypothetical protein
805	 62.58	-2	868740..870527	+	595	184200451	-	KRH_08050	-	putative peptide ABC transporter peptide-binding protein
806	 66.67	-1	870637..872172	+	511	184200452	-	KRH_08060	-	putative peptide ABC transporter permease protein
807	 69.18	0	872169..873242	+	357	184200453	-	KRH_08070	-	putative peptide ABC transporter permease protein
808	 74.61	0	873254..873895	-	213	184200454	-	KRH_08080	-	hypothetical protein
809	 70.39	0	874402..876147	+	581	184200455	-	KRH_08090	-	putative ABC transporter ATP-binding protein
810	 73.39	0	876236..876934	+	232	184200456	-	KRH_08100	-	hypothetical protein
811	 72.22	0	876953..877438	-	161	184200457	-	KRH_08110	-	hypothetical protein
812	 69.36	0	877600..877896	+	98	184200458	gatC	KRH_08120	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
813	 72.33	0	877893..879500	+	535	184200459	gatA	KRH_08130	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
814	 68.92	0	879500..881005	+	501	184200460	gatB	KRH_08140	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
815	 74.02	0	881313..882617	-	434	184200461	-	KRH_08150	-	hypothetical protein
816	 73.55	0	882766..883608	+	280	184200462	-	KRH_08160	-	hypothetical protein
817	 70.97	0	883731..884009	-	92	184200463	-	KRH_08170	-	hypothetical protein
818	 71.30	0	884197..884520	-	107	184200464	-	KRH_08180	-	branched-chain amino acid export protein small subunit
819	 70.18	0	884501..885211	-	236	184200465	-	KRH_08190	-	branched-chain amino acid export protein large subunit
820	 73.61	0	885319..887334	+	671	184200466	-	KRH_08200	-	S9C family peptidase
821	 68.19	0	887562..889469	+	635	184200467	typA	KRH_08210	-	putative GTP-binding protein TypA
822	 75.18	+1	889544..890377	+	277	184200468	mshB	KRH_08220	-	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase MshB
823	 75.08	+1	890374..891027	+	217	184200469	-	KRH_08230	-	hypothetical protein
824	 65.74	-1	891090..891413	+	107	184200470	-	KRH_08240	-	ferredoxin
825	 73.82	0	891418..892563	+	381	184200471	-	KRH_08250	-	aminotransferase
826	 63.86	-1	892684..894039	+	451	184200472	gltA	KRH_08260	-	citrate synthase
827	 69.91	0	894219..895235	-	338	184200473	galE	KRH_08270	-	UDP-glucose 4-epimerase
828	 72.74	0	895499..896470	-	323	184200474	dapD	KRH_08280	-	tetrahydrodipicolinate N-succinyltransferase
829	 72.18	0	896595..897701	+	368	184200475	dapE	KRH_08290	-	succinyl-diaminopimelate desuccinylase
830	 72.35	0	897723..898601	+	292	184200476	-	KRH_08300	-	hypothetical protein
831	 76.88	+1	898598..900076	+	492	184200477	-	KRH_08310	-	hypothetical protein
832	 67.86	0	900242..900409	+	55	184200478	-	KRH_08320	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.