IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
399	 72.09	0	438460..438975	+	171	184200045	grpE	KRH_03990	-	GrpE protein
400	 69.77	0	439060..440091	+	343	184200046	-	KRH_04000	-	heat shock protein DnaJ family protein
401	 71.01	0	440093..440599	+	168	184200047	hspR	KRH_04010	-	putative heat shock protein HspR
402	 73.72	0	440770..441549	-	259	184200048	trmB	KRH_04020	-	tRNA (guanine-N(7)-)-methyltransferase
403	 73.51	0	442001..443227	+	408	184200049	-	KRH_04030	-	drug resistance efflux protein
404	 68.92	0	443590..445056	+	488	184200050	-	KRH_04040	-	sodium/alanine symporter
405	 67.59	0	445316..446824	+	502	184200051	cycA	KRH_04050	-	D-serine/D-alanine/glycine transporter
406	 72.71	0	446887..447747	+	286	184200052	-	KRH_04060	-	hypothetical protein
407	 69.48	0	447772..449298	-	508	184200053	-	KRH_04070	-	sodium/alanine symporter
408	 69.95	0	449456..449851	-	131	184200054	-	KRH_04080	-	hypothetical protein
409	 68.97	0	450058..450840	+	260	184200055	-	KRH_04090	-	ThiJ/PfpI family protein
410	 68.05	0	450837..451634	+	265	184200056	-	KRH_04100	-	putative oxidoreductase
411	 68.00	0	451631..451780	+	49	184200057	-	KRH_04110	-	hypothetical protein
412	 69.32	0	451823..452575	+	250	184200058	-	KRH_04120	-	putative oxidoreductase
413	 73.20	0	452856..454463	+	535	184200059	-	KRH_04130	-	putative DEAD-box RNA helicase
414	 72.96	0	454591..455241	-	216	184200060	-	KRH_04140	-	putative phosphatase
415	 73.63	0	455360..456034	-	224	184200061	-	KRH_04150	-	putative phosphatase
416	 73.00	0	456088..456687	+	199	184200062	-	KRH_04160	-	hypothetical protein
417	 75.12	+1	456684..457310	+	208	184200063	-	KRH_04170	-	putative acetyltransferase
418	 72.15	0	457303..457995	+	230	184200064	tag	KRH_04180	-	3-methyladenine-DNA glycosylase I
419	 66.67	-1	457971..458195	-	74	184200065	-	KRH_04190	-	hypothetical protein
420	 68.99	0	458374..461037	+	887	184200066	clpB	KRH_04200	-	chaperone ClpB
421	 72.63	0	461239..461607	-	122	184200067	-	KRH_04210	-	hypothetical protein
422	 63.68	-1	461921..462121	+	66	184200068	-	KRH_04220	-	hypothetical protein
423	 73.32	0	462330..463487	-	385	184200069	purM	KRH_04230	-	phosphoribosylformylglycinamidine cyclo-ligase
424	 70.80	0	463484..465031	-	515	184200070	purF	KRH_04240	-	amidophosphoribosyltransferase
425	 73.47	0	465044..465469	-	141	184200071	-	KRH_04250	-	hypothetical protein
426	 76.86	+1	465466..465828	-	120	184200072	-	KRH_04260	-	hypothetical protein
427	 72.46	0	465839..466840	-	333	184200073	-	KRH_04270	-	hypothetical protein
428	 75.00	+1	466911..468278	+	455	184200074	purD	KRH_04280	-	phosphoribosylamine--glycine ligase
429	 70.06	0	468275..469246	+	323	184200075	purC	KRH_04290	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
430	 77.27	+1	469224..469619	-	131	184200076	-	KRH_04300	-	hypothetical protein
431	 72.12	0	469586..470740	-	384	184200077	-	KRH_04310	-	two-component histidine kinase
432	 71.57	0	470791..470994	-	67	184200078	-	KRH_04320	-	hypothetical protein
433	 70.22	0	471006..471764	+	252	184200079	-	KRH_04330	-	NarL family two-component response regulator
434	 72.20	0	472121..472843	-	240	184200080	-	KRH_04340	-	GntR family transcriptional regulator
435	 68.58	0	472928..474598	-	556	184200081	-	KRH_04350	-	putative L-lactate permease
436	 67.85	0	474925..475767	+	280	184200082	-	KRH_04360	-	hypothetical protein
437	 70.98	0	475764..477755	+	663	184200083	-	KRH_04370	-	putative iron-sulfur protein
438	 71.47	0	477752..478396	+	214	184200084	-	KRH_04380	-	hypothetical protein
439	 74.13	0	478549..479808	-	419	184200085	moeB	KRH_04390	-	putative molybdopterin synthase sulfurylase MoeB
440	 75.33	+1	479805..481016	-	403	184200086	thiG	KRH_04400	-	thiazole biosynthesis protein ThiG
441	 74.53	0	481019..481285	-	88	184200087	thiS	KRH_04410	-	putative thiamine biosynthesis protein ThiS
442	 75.20	+1	481378..482655	-	425	184200088	thiO	KRH_04420	-	putative thiamine biosynthesis oxidoreductase ThiO
443	 74.06	0	482893..483555	+	220	184200089	thiE	KRH_04430	-	thiamine-phosphate pyrophosphorylase
444	 76.44	+1	483662..484234	-	190	184200090	-	KRH_04440	-	hypothetical protein
445	 76.24	+1	484231..485097	-	288	184200091	-	KRH_04450	-	putative phenazine biosynthesis protein
446	 74.44	0	485358..486605	+	415	184200092	-	KRH_04460	-	MFS transporter
447	 73.33	0	486719..489733	-	1004	184200093	-	KRH_04470	-	putative FAD linked oxidase
448	 73.87	0	489744..490673	-	309	184200094	-	KRH_04480	-	hypothetical protein
449	 66.57	-1	490670..492811	-	713	184200095	-	KRH_04490	-	penicillin-binding protein
450	 64.62	-1	492929..493123	+	64	184200096	-	KRH_04500	-	hypothetical protein
451	 72.92	0	493143..493622	+	159	184200097	-	KRH_04510	-	hypothetical protein
452	 73.11	0	493625..494539	+	304	184200098	-	KRH_04520	-	hypothetical protein
453	 70.21	0	494752..495429	-	225	184200099	-	KRH_04530	-	Crp family transcriptional regulator
454	 72.32	0	495685..496869	+	394	184200100	-	KRH_04540	-	S1C family peptidase
455	 69.46	0	497032..497496	-	154	184200101	aroD	KRH_04550	-	3-dehydroquinate dehydratase
456	 69.44	0	497731..499680	-	649	184200102	acs	KRH_04560	-	acetate--CoA ligase
457	 73.84	0	499891..500727	+	278	184200103	nth	KRH_04570	-	putative endonuclease III
458	 72.16	0	500739..501521	+	260	184200104	-	KRH_04580	-	hypothetical protein
459	 74.59	0	501618..503384	-	588	184200105	-	KRH_04590	-	putative DNA polymerase
460	 72.93	0	503527..503973	-	148	184200106	-	KRH_04600	-	hypothetical protein
461	 75.15	+1	504198..504869	+	223	184200107	-	KRH_04610	-	hypothetical protein
462	 71.35	0	504906..505673	-	255	184200108	-	KRH_04620	-	hypothetical protein
463	 77.21	+1	505812..506921	+	369	184200109	-	KRH_04630	-	hypothetical protein
464	 75.04	+1	506918..508135	+	405	184200110	-	KRH_04640	-	hypothetical protein
465	 76.60	+1	508132..508896	+	254	184200111	-	KRH_04650	-	hypothetical protein
466	 74.75	0	508893..509498	+	201	184200112	-	KRH_04660	-	hypothetical protein
467	 72.36	0	509641..510009	+	122	184200113	-	KRH_04670	-	hypothetical protein
468	 75.90	+1	510131..510628	+	165	184200114	-	KRH_04680	-	hypothetical protein
469	 76.15	+1	510615..510983	+	122	184200115	-	KRH_04690	-	hypothetical protein
470	 72.54	0	511119..513449	-	776	184200116	-	KRH_04700	-	putative ATP-dependent helicase
471	 68.75	0	513767..514198	+	143	184200117	-	KRH_04710	-	hypothetical protein
472	 73.83	0	514201..515931	+	576	184200118	-	KRH_04720	-	hypothetical protein
473	 69.76	0	516163..519105	+	980	184200119	topA	KRH_04730	-	DNA topoisomerase I
474	 72.48	0	519194..520174	+	326	184200120	-	KRH_04740	-	Ppx/GppA phosphatase family protein
475	 69.27	0	520171..520977	+	268	184200121	-	KRH_04750	-	hypothetical protein
476	 72.59	0	521042..521497	+	151	184200122	-	KRH_04760	-	putative acetyltransferase
477	 73.81	0	521651..522490	+	279	184200123	proC	KRH_04770	-	pyrroline-5-carboxylate reductase
478	 72.56	0	522487..523623	+	378	184200124	-	KRH_04780	-	putative glutamate--cysteine ligase
479	 69.81	0	523788..524456	-	222	184200125	-	KRH_04790	-	hypothetical protein
480	 68.53	0	524449..525894	-	481	184200126	-	KRH_04800	-	putative cation transporter
481	 70.38	0	526040..527251	+	403	184200127	-	KRH_04810	-	putative acetoin utilization protein
482	 75.40	+1	527339..528472	+	377	184200128	-	KRH_04820	-	transcription regulator ArsR
483	 67.86	0	528512..529852	+	446	184200129	gdhA	KRH_04830	-	NADP-dependent glutamate dehydrogenase
484	 71.84	0	529884..530753	+	289	184200130	-	KRH_04840	-	GntR family transcriptional regulator
485	 58.59	-2	530909..531007	+	32	184200131	-	KRH_04850	-	hypothetical protein
486	 72.44	0	531387..531611	+	74	184200132	-	KRH_04860	-	hypothetical protein
487	 74.26	0	531656..532327	+	223	184200133	-	KRH_04870	-	phosphoglycerate/bisphosphoglycerate mutase family protein
488	 72.02	0	532331..533002	+	223	184200134	resA	KRH_04880	-	thiol-disulfide oxidoreductase ResA
489	 69.30	0	532999..533757	+	252	184200135	ccdA	KRH_04890	-	cytochrome c-type biogenesis protein CcdA
490	 68.44	0	533754..535445	+	563	184200136	resB	KRH_04900	-	putative cytochrome c biogenesis protein ResB
491	 70.69	0	535486..536553	+	355	184200137	resC	KRH_04910	-	putative cytochrome c biogenesis protein ResC
492	 72.46	0	536701..537252	-	183	184200138	-	KRH_04920	-	hypothetical protein
493	 64.16	-1	537541..537819	+	92	184200139	-	KRH_04930	-	hypothetical protein
494	 72.20	0	537826..538710	-	294	184200140	menA	KRH_04940	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
495	 74.66	0	538968..539480	-	170	184200141	-	KRH_04950	-	hypothetical protein
496	 75.02	+1	539492..541048	-	518	184200142	menE	KRH_04960	-	putative o-succinylbenzoate--CoA ligase
497	 70.29	0	541057..542022	-	321	184200143	menB	KRH_04970	-	naphthoate synthase
498	 70.31	0	542202..542969	+	255	184200144	-	KRH_04980	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.