IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
225	 64.48	-1	249946..250449	-	167	184199871	-	KRH_02250	-	hypothetical protein
226	 76.33	+1	250481..250687	+	68	184199872	-	KRH_02260	-	hypothetical protein
227	 69.79	0	250982..251782	-	266	184199873	-	KRH_02270	-	hypothetical protein
228	 67.94	0	252216..253082	-	288	184199874	paaH	KRH_02280	-	putative 3-hydroxybutyryl-CoA dehydrogenase
229	 73.31	0	253079..254011	-	310	184199875	paaF	KRH_02290	-	putative enoyl-CoA hydratase PaaF
230	 71.49	0	254019..255242	-	407	184199876	paaJ	KRH_02300	-	putative beta-ketoadipyl CoA thiolase
231	 67.93	0	255424..256848	-	474	184199877	-	KRH_02310	-	MFS transporter
232	 68.48	0	257107..258318	-	403	184199878	-	KRH_02320	-	hypothetical protein
233	 70.78	0	258547..259299	+	250	184199879	bdh	KRH_02330	-	3-hydroxybutyrate dehydrogenase
234	 71.17	0	259406..260137	+	243	184199880	scoA	KRH_02340	-	succinyl-CoA--3-ketoacid-CoA transferase subunit A
235	 67.70	0	260134..260811	+	225	184199881	scoB	KRH_02350	-	succinyl-CoA--3-ketoacid-CoA transferase subunit B
236	 72.54	0	260808..261998	+	396	184199882	-	KRH_02360	-	acetyl-CoA acetyltransferase
237	 67.47	0	262346..262840	+	164	184199883	-	KRH_02370	-	hypothetical protein
238	 74.20	0	262837..263778	+	313	184199884	-	KRH_02380	-	hypothetical protein
239	 69.96	0	263985..265379	+	464	184199885	-	KRH_02390	-	putative short chain fatty acid transporter
240	 71.88	0	265450..266370	-	306	184199886	mmsB	KRH_02400	-	3-hydroxyisobutyrate dehydrogenase
241	 67.17	0	266564..267955	-	463	184199887	-	KRH_02410	-	MFS transporter
242	 69.90	0	268246..268740	-	164	184199888	-	KRH_02420	-	putative acetyltransferase
243	 72.54	0	268936..269463	-	175	184199889	-	KRH_02430	-	TetR family transcriptional regulator
244	 70.85	0	269726..271135	+	469	184199890	bioB	KRH_02440	-	biotin synthase
245	 71.21	0	271128..272669	+	513	184199891	bioA	KRH_02450	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
246	 74.62	0	272735..273928	+	397	184199892	bioF	KRH_02460	-	8-amino-7-oxononanoate synthase
247	 68.37	0	274022..275017	+	331	184199893	bioD	KRH_02470	-	dethiobiotin synthetase
248	 44.03	-2	275534..278038	+	834	184199894	-	KRH_02480	-	hypothetical protein
249	 71.60	0	278289..279830	-	513	184199895	-	KRH_02490	-	putative sugar kinase
250	 62.11	-2	280198..281382	+	394	184199896	-	KRH_02500	-	putative transposase
251	 55.73	-2	281332..281523	-	63	184199897	-	KRH_02510	-	hypothetical protein
252	 60.19	-2	281636..283489	-	617	184199898	-	KRH_02520	-	Na(+)/H(+) antiporter
253	 69.51	0	283499..284167	-	222	184199899	-	KRH_02530	-	putative transposase
254	 67.95	0	284180..284335	-	51	184199900	-	KRH_02540	-	putative transposase
255	 70.59	0	284432..284686	-	84	184199901	-	KRH_02550	-	hypothetical protein
256	 68.41	0	285393..287231	+	612	184199902	ilvD	KRH_02560	-	dihydroxy-acid dehydratase
257	 66.87	-1	287386..288873	+	495	184199903	-	KRH_02570	-	sodium/alanine symporter
258	 65.55	-1	289029..290279	-	416	184199904	-	KRH_02580	-	hypothetical protein
259	 76.24	+1	290421..291005	+	194	184199905	-	KRH_02590	-	hypothetical protein
260	 70.15	0	291119..291835	-	238	184199906	-	KRH_02600	-	putative succinate dehydrogenase iron-sulfur protein
261	 74.80	+1	291835..292854	-	339	184199907	-	KRH_02610	-	hypothetical protein
262	 68.12	0	293137..293550	+	137	184199908	-	KRH_02620	-	hypothetical protein
263	 65.76	-1	293905..294456	-	183	184199909	-	KRH_02630	-	TetR family transcriptional regulator
264	 67.11	-1	294540..294995	+	151	184199910	-	KRH_02640	-	hypothetical protein
265	 67.81	0	294992..296038	+	348	184199911	-	KRH_02650	-	putative transposase
266	 65.18	-1	295972..296712	-	246	184199912	-	KRH_02660	-	hypothetical protein
267	 69.91	0	296772..297326	-	184	184199913	-	KRH_02670	-	hypothetical protein
268	 69.58	0	297582..298646	+	354	184199914	-	KRH_02680	-	putative zinc-containing alcohol dehydrogenase
269	 68.01	0	298889..300379	-	496	184199915	cls	KRH_02690	-	putative cardiolipin synthase
270	 72.09	0	300392..300907	-	171	184199916	-	KRH_02700	-	hypothetical protein
271	 70.93	0	300963..303260	-	765	184199917	purL	KRH_02710	-	phosphoribosylformylglycinamidine synthase II
272	 71.87	0	303403..304113	-	236	184199918	purQ	KRH_02720	-	phosphoribosylformylglycinamidine synthase I
273	 68.99	0	304197..304454	-	85	184199919	purS	KRH_02730	-	phosphoribosylformylglycinamidine synthase
274	 73.82	0	304603..305301	-	232	184199920	-	KRH_02740	-	hypothetical protein
275	 68.71	0	305375..306745	-	456	184199921	-	KRH_02750	-	citrate transporter
276	 74.48	0	306919..308634	+	571	184199922	-	KRH_02760	-	two-component histidine kinase
277	 74.58	0	308631..309287	+	218	184199923	-	KRH_02770	-	CriR/CitT family two-component response regulator
278	 74.72	0	309301..309660	-	119	184199924	-	KRH_02780	-	hypothetical protein
279	 72.83	0	309657..310565	-	302	184199925	-	KRH_02790	-	hypothetical protein
280	 72.09	0	310558..311073	-	171	184199926	-	KRH_02800	-	MarR family transcriptional regulator
281	 68.45	0	311232..312518	-	428	184199927	ask	KRH_02810	-	aspartokinase
282	 68.98	0	312673..313278	-	201	184199928	recR	KRH_02820	-	recombination protein RecR
283	 75.20	+1	313355..317149	-	1264	184199929	dnaX	KRH_02830	-	DNA polymerase III tau subunit
284	 70.04	0	317690..318223	+	177	184199930	-	KRH_02840	-	hypothetical protein
285	 77.32	+1	318224..318514	+	96	184199931	-	KRH_02850	-	hypothetical protein
286	 70.74	0	318624..319016	-	130	184199932	-	KRH_02860	-	hypothetical protein
287	 70.80	0	319281..321191	-	636	184199933	-	KRH_02870	-	hypothetical protein
288	 69.09	0	321635..321964	-	109	184199934	-	KRH_02880	-	hypothetical protein
289	 70.27	0	322005..322670	-	221	184199935	-	KRH_02890	-	TetR family transcriptional regulator
290	 71.01	0	322821..323648	-	275	184199936	-	KRH_02900	-	hypothetical protein
291	 67.59	0	323771..324529	+	252	184199937	-	KRH_02910	-	hypothetical protein
292	 74.51	0	324573..325439	-	288	184199938	-	KRH_02920	-	hypothetical protein
293	 70.90	0	325515..325703	+	62	184199939	-	KRH_02930	-	hypothetical protein
294	 62.15	-2	325794..326147	+	117	184199940	-	KRH_02940	-	hypothetical protein
295	 65.69	-1	326185..326286	-	33	184199941	-	KRH_02950	-	AraC family transcription regulator
296	 68.58	0	326362..326988	-	208	184199942	-	KRH_02960	-	AraC family transcription regulator
297	 67.79	0	327020..327376	+	118	184199943	-	KRH_02970	-	hypothetical protein
298	 69.67	0	327447..328811	-	454	184199944	tgt	KRH_02980	-	queuine tRNA-ribosyltransferase
299	 71.88	0	328930..329715	-	261	184199945	-	KRH_02990	-	IclR family transcriptional regulator
300	 66.99	-1	329792..331039	-	415	184199946	-	KRH_03000	-	creatinase
301	 69.13	0	331209..332546	-	445	184199947	proP	KRH_03010	-	proline/betaine transporter
302	 69.80	0	332751..333293	-	180	184199948	-	KRH_03020	-	hypothetical protein
303	 74.85	+1	333356..334528	-	390	184199949	-	KRH_03030	-	putative glycosidase
304	 72.01	0	334682..335224	-	180	184199950	idi	KRH_03040	-	isopentenyl-diphosphate delta-isomerase
305	 72.17	0	335287..336267	+	326	184199951	-	KRH_03050	-	putative pseudouridine synthase
306	 72.22	0	336486..337493	+	335	184199952	-	KRH_03060	-	hypothetical protein
307	 73.02	0	337742..338749	-	335	184199953	-	KRH_03070	-	putative DNA glycosylase
308	 68.24	0	338932..339441	+	169	184199954	-	KRH_03080	-	hypothetical protein
309	 63.75	-1	339522..340310	+	262	184199955	-	KRH_03090	-	putative esterase
310	 74.55	0	340396..345732	-	1778	184199956	-	KRH_03100	-	putative ATP-dependent DNA helicase
311	 74.16	0	345722..346495	-	257	184199957	-	KRH_03110	-	hypothetical protein
312	 72.26	0	346492..349566	-	1024	184199958	-	KRH_03120	-	putative FAD linked oxidase
313	 64.83	-1	349594..349920	-	108	184199959	-	KRH_03130	-	2Fe-2S ferredoxin
314	 70.92	0	350030..350851	-	273	184199960	-	KRH_03140	-	hypothetical protein
315	 66.58	-1	351049..352161	-	370	184199961	-	KRH_03150	-	hypothetical protein
316	 71.04	0	352232..353284	-	350	184199962	-	KRH_03160	-	putative oxidoreductase
317	 74.21	0	353624..354100	-	158	184199963	-	KRH_03170	-	putative deaminase
318	 64.47	-1	354106..354789	-	227	184199964	-	KRH_03180	-	hypothetical protein
319	 66.43	-1	354841..356124	-	427	184199965	-	KRH_03190	-	hypothetical protein
320	 70.39	0	356121..357032	-	303	184199966	-	KRH_03200	-	putative ABC transporter ATP-binding protein
321	 69.81	0	357269..357904	+	211	184199967	upp	KRH_03210	-	uracil phosphoribosyltransferase
322	 72.58	0	358162..358956	+	264	184199968	-	KRH_03220	-	putative transcriptional regulator
323	 73.37	0	359068..359589	+	173	184199969	-	KRH_03230	-	hypothetical protein
324	 73.18	0	359561..359821	-	86	184199970	-	KRH_03240	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.