IslandPathversion 1.0

IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 70.94 STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2218	 72.83	0	2545898..2546806	-	302	184201864	surE	KRH_22180	-	5'-nucleotidase SurE
2219	 73.73	0	2546823..2547785	-	320	184201865	-	KRH_22190	-	hypothetical protein
2220	 69.98	0	2547814..2548326	+	170	184201866	-	KRH_22200	-	putative acetyltransferase
2221	 63.61	-1	2548487..2549107	-	206	184201867	-	KRH_22210	-	hypothetical protein
2222	 69.29	0	2549137..2549556	-	139	184201868	-	KRH_22220	-	hypothetical protein
2223	 65.45	-1	2549844..2550335	+	163	184201869	-	KRH_22230	-	heat shock protein Hsp20 family protein
2224	 69.98	0	2550569..2551564	-	331	184201870	cdsA	KRH_22240	-	phosphatidate cytidylyltransferase
2225	 74.66	0	2551571..2552233	-	220	184201871	-	KRH_22250	-	putative phosphatidylinositol synthase
2226	 76.60	+1	2552487..2553050	+	187	184201872	-	KRH_22260	-	hypothetical protein
2227	 72.24	0	2553118..2556759	-	1213	184201873	-	KRH_22270	-	hypothetical protein
2228	 73.12	0	2556895..2557560	-	221	184201874	-	KRH_22280	-	TetR family transcriptional regulator
2229	 74.23	0	2557650..2559182	-	510	184201875	dsdA	KRH_22290	-	D-serine dehydratase
2230	 73.27	0	2559232..2560488	-	418	184201876	-	KRH_22300	-	MFS transporter
2231	 72.34	0	2560814..2562418	+	534	184201877	-	KRH_22310	-	oxidoreductase
2232	 63.29	-1	2562607..2562813	-	68	184201878	-	KRH_22320	-	cold shock protein
2233	 70.18	0	2563062..2564144	-	360	184201879	-	KRH_22330	-	putative oxidoreductase
2234	 71.00	0	2564382..2565788	-	468	184201880	-	KRH_22340	-	aldehyde dehydrogenase
2235	 70.71	0	2565998..2567482	+	494	184201881	-	KRH_22350	-	putative amino acid transporter
2236	 70.50	0	2567652..2568983	+	443	184201882	-	KRH_22360	-	flavin-containing amine oxidase
2237	 72.03	0	2569200..2570150	-	316	184201883	-	KRH_22370	-	AraC family transcription regulator
2238	 68.71	0	2570352..2570792	+	146	184201884	-	KRH_22380	-	putative phenylacetic acid degradation protein
2239	 71.77	0	2570832..2571635	-	267	184201885	-	KRH_22390	-	oxidoreductase
2240	 71.90	0	2571676..2573337	-	553	184201886	-	KRH_22400	-	putative hydrolase
2241	 70.74	0	2573363..2574763	-	466	184201887	-	KRH_22410	-	MFS transporter
2242	 68.23	0	2575082..2575273	+	63	184201888	-	KRH_22420	-	hypothetical protein
2243	 71.75	0	2575277..2575453	+	58	184201889	-	KRH_22430	-	hypothetical protein
2244	 73.88	0	2575450..2577183	-	577	184201890	-	KRH_22440	-	acyltransferase
2245	 70.80	0	2577248..2578456	-	402	184201891	-	KRH_22450	-	aminotransferase
2246	 70.98	0	2578929..2579600	-	223	184201892	-	KRH_22460	-	hypothetical protein
2247	 72.22	0	2579703..2580152	+	149	184201893	-	KRH_22470	-	pyrimidine dimer DNA glycosylase
2248	 73.68	0	2580217..2580786	+	189	184201894	-	KRH_22480	-	hypothetical protein
2249	 76.17	+1	2580820..2582418	+	532	184201895	-	KRH_22490	-	putative DNA-3-methyladenine glycosylase II
2250	 76.79	+1	2582415..2582918	+	167	184201896	-	KRH_22500	-	putative methyltransferase
2251	 75.25	+1	2583129..2583920	+	263	184201897	-	KRH_22510	-	putative glycosyltransferase
2252	 71.64	0	2584178..2584660	+	160	184201898	-	KRH_22520	-	hypothetical protein
2253	 71.92	0	2584780..2585217	-	145	184201899	-	KRH_22530	-	hypothetical protein
2254	 67.61	0	2585214..2585636	-	140	184201900	ohr	KRH_22540	-	organic hydroperoxide resistance protein
2255	 65.46	-1	2586008..2587084	-	358	184201901	-	KRH_22550	-	2,3-butanediol dehydrogenase
2256	 66.55	-1	2587393..2588232	+	279	184201902	-	KRH_22560	-	phosphotransferase system enzyme IIAB component
2257	 65.34	-1	2588283..2589869	+	528	184201903	-	KRH_22570	-	phosphotransferase system enzyme IIC component
2258	 72.35	0	2589866..2590534	+	222	184201904	-	KRH_22580	-	hypothetical protein
2259	 70.62	0	2590531..2591163	+	210	184201905	-	KRH_22590	-	putative acetyltransferase
2260	 73.23	0	2591148..2591528	+	126	184201906	-	KRH_22600	-	hypothetical protein
2261	 66.88	-1	2591635..2592555	-	306	184201907	-	KRH_22610	-	hypothetical protein
2262	 71.43	0	2592622..2593209	-	195	184201908	-	KRH_22620	-	hypothetical protein
2263	 69.28	0	2593393..2595612	+	739	184201909	katE	KRH_22630	-	catalase HPII
2264	 71.47	0	2595837..2596898	+	353	184201910	-	KRH_22640	-	hypothetical protein
2265	 73.48	0	2596925..2597320	+	131	184201911	-	KRH_22650	-	hypothetical protein
2266	 66.67	-1	2597445..2597612	-	55	184201912	-	KRH_22660	-	hypothetical protein
2267	 72.90	0	2597873..2598787	+	304	184201913	-	KRH_22670	-	hypothetical protein
2268	 61.11	-2	2599039..2599398	+	119	184201914	-	KRH_22680	-	hypothetical protein
2269	 62.17	-2	2599731..2600219	+	162	184201915	-	KRH_22690	-	hypothetical protein
2270	 65.19	-1	2600331..2600600	-	89	184201916	-	KRH_22700	-	hypothetical protein
2271	 72.28	0	2600812..2601756	-	314	184201917	-	KRH_22710	-	putative electron transfer flavoprotein alpha subunit
2272	 73.23	0	2601890..2602696	-	268	184201918	-	KRH_22720	-	putative electron transfer flavoprotein beta subunit
2273	 75.20	+1	2602696..2603586	-	296	184201919	-	KRH_22730	-	putative citrate lyase beta chain
2274	 71.08	0	2603583..2604284	-	233	184201920	-	KRH_22740	-	hypothetical protein
2275	 68.78	0	2604281..2605462	-	393	184201921	fadE	KRH_22750	-	acyl-CoA dehydrogenase
2276	 73.62	0	2605596..2607665	-	689	184201922	accA	KRH_22760	-	acyl-CoA carboxylase alpha chain
2277	 69.41	0	2607677..2609350	-	557	184201923	accD	KRH_22770	-	acyl-CoA carboxylase beta chain
2278	 70.75	0	2609411..2610022	+	203	184201924	-	KRH_22780	-	TetR family transcriptional regulator
2279	 69.83	0	2610027..2611196	+	389	184201925	fadE	KRH_22790	-	acyl-CoA dehydrogenase
2280	 68.95	0	2611275..2612897	+	540	184201926	-	KRH_22800	-	putative fatty-acid--CoA ligase
2281	 64.43	-1	2612921..2613412	+	163	184201927	-	KRH_22810	-	hypothetical protein
2282	 70.10	0	2613643..2614371	+	242	184201928	-	KRH_22820	-	hypothetical protein
2283	 65.38	-1	2614428..2614661	+	77	184201929	-	KRH_22830	-	hypothetical protein
2284	 74.34	0	2614724..2615062	-	112	184201930	-	KRH_22840	-	hypothetical protein
2285	 70.15	0	2615072..2615272	-	66	184201931	-	KRH_22850	-	hypothetical protein
2286	 71.12	0	2615394..2616719	-	441	184201932	phrB	KRH_22860	-	deoxyribodipyrimidine photo-lyase
2287	 67.94	0	2616923..2618257	-	444	184201933	-	KRH_22870	-	serine transporter
2288	 68.75	0	2618471..2618902	+	143	184201934	-	KRH_22880	-	MarR family transcriptional regulator
2289	 67.92	0	2618951..2620708	-	585	184201935	-	KRH_22890	-	hypothetical protein
2290	 72.01	0	2620852..2621544	+	230	184201936	-	KRH_22900	-	TetR family transcriptional regulator
2291	 68.18	0	2621780..2623234	-	484	184201937	proY	KRH_22910	-	putative proline-specific permease
2292	 73.30	0	2623231..2624391	-	386	184201938	hutG	KRH_22920	-	formiminoglutamate hydrolase
2293	 73.41	0	2624626..2625411	+	261	184201939	-	KRH_22930	-	IclR family transcriptional regulator
2294	 65.59	-1	2625551..2625829	-	92	184201940	-	KRH_22940	-	hypothetical protein
2295	 70.39	0	2626107..2627825	+	572	184201941	hutU	KRH_22950	-	urocanate hydratase
2296	 73.89	0	2627822..2628997	+	391	184201942	hutI	KRH_22960	-	imidazolonepropionase
2297	 68.11	0	2629111..2630430	+	439	184201943	-	KRH_22970	-	hypothetical protein
2298	 73.27	0	2630547..2632076	+	509	184201944	hutH	KRH_22980	-	histidine ammonia-lyase
2299	 78.23	+1	2632299..2632592	+	97	184201945	-	KRH_22990	-	putative regulatory protein
2300	 68.10	0	2632651..2633907	+	418	184201946	-	KRH_23000	-	acetamidase/formamidase
2301	 72.47	0	2634032..2634910	-	292	184201947	-	KRH_23010	-	putative hydrolase
2302	 62.53	-2	2635004..2637442	+	812	184201948	-	KRH_23020	-	hypothetical protein
2303	 66.61	-1	2637509..2640769	+	1086	184201949	-	KRH_23030	-	hypothetical protein
2304	 74.47	0	2640952..2641515	-	187	184201950	-	KRH_23040	-	hypothetical protein
2305	 68.13	0	2641512..2641784	-	90	184201951	-	KRH_23050	-	hypothetical protein
2306	 70.99	0	2641781..2643007	-	408	184201952	pit	KRH_23060	-	inorganic phosphate transporter
2307	 70.37	0	2643146..2644711	+	521	184201953	-	KRH_23070	-	drug resistance efflux protein
2308	 68.66	0	2644890..2646344	-	484	184201954	-	KRH_23080	-	hypothetical protein
2309	 68.94	0	2646692..2647174	-	160	184201955	-	KRH_23090	-	hypothetical protein
2310	 75.96	+1	2647171..2648160	-	329	184201956	-	KRH_23100	-	NAD-dependent epimerase/dehydratase family protein
2311	 62.03	-2	2648320..2648556	+	78	184201957	-	KRH_23110	-	hypothetical protein
2312	 65.43	-1	2648650..2648811	-	53	184201958	-	KRH_23120	-	hypothetical protein
2313	 75.21	+1	2648896..2651469	-	857	184201959	-	KRH_23130	-	putative para-aminobenzoate synthase component I
2314	 69.48	0	2651496..2651708	-	70	184201960	-	KRH_23140	-	hypothetical protein
2315	 67.25	0	2651739..2652758	-	339	184201961	-	KRH_23150	-	oxidoreductase
2316	 65.04	-1	2652924..2653046	-	40	184201962	rpmJ	KRH_23160	-	50S ribosomal protein L36
2317	 70.75	0	2653072..2654661	-	529	184201963	-	KRH_23170	-	putative two-component histidine kinase
70.94	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.