IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2017	 75.80	+1	2316515..2317390	+	291	184201663	-	KRH_20170	-	hypothetical protein
2018	 68.30	0	2317784..2318272	-	162	184201664	-	KRH_20180	-	transcription regulator AsnC
2019	 70.46	0	2318488..2319621	+	377	184201665	-	KRH_20190	-	putative phenylalanine aminotransferase
2020	 69.45	0	2319629..2321065	+	478	184201666	aroP	KRH_20200	-	putative aromatic amino acid transport protein
2021	 73.22	0	2321250..2322713	-	487	184201667	-	KRH_20210	-	hypothetical protein
2022	 70.18	0	2322829..2323227	-	132	184201668	-	KRH_20220	-	putative acetyltransferase
2023	 70.25	0	2323271..2323549	-	92	184201669	-	KRH_20230	-	hypothetical protein
2024	 68.41	0	2323593..2324684	-	363	184201670	-	KRH_20240	-	hypothetical protein
2025	 57.70	-2	2324975..2326078	+	367	184201671	-	KRH_20250	-	hypothetical protein
2026	 75.17	+1	2326125..2326724	-	199	184201672	-	KRH_20260	-	putative methyltransferase
2027	 74.40	0	2326884..2327633	+	249	184201673	-	KRH_20270	-	hypothetical protein
2028	 69.43	0	2327948..2329324	+	458	184201674	glpT	KRH_20280	-	glycerol-3-phosphate transporter
2029	 70.92	0	2329514..2329960	+	148	184201675	-	KRH_20290	-	hypothetical protein
2030	 70.98	0	2330116..2331345	-	409	184201676	-	KRH_20300	-	MFS transporter
2031	 71.73	0	2331480..2332229	-	249	184201677	-	KRH_20310	-	hypothetical protein
2032	 72.22	0	2332563..2333102	+	179	184201678	gntK	KRH_20320	-	gluconokinase
2033	 72.74	0	2333316..2334452	-	378	184201679	rumB	KRH_20330	-	putative 23S rRNA (uracil-5-)-methyltransferase RumB
2034	 74.57	0	2335039..2335683	+	214	184201680	-	KRH_20340	-	hypothetical protein
2035	 67.04	-1	2335652..2335921	-	89	184201681	-	KRH_20350	-	hypothetical protein
2036	 76.22	+1	2336219..2338039	+	606	184201682	-	KRH_20360	-	hypothetical protein
2037	 77.33	+1	2338259..2341333	-	1024	184201683	-	KRH_20370	-	hypothetical protein
2038	 73.98	0	2341339..2342418	-	359	184201684	-	KRH_20380	-	hypothetical protein
2039	 72.51	0	2342415..2343356	-	313	184201685	-	KRH_20390	-	hypothetical protein
2040	 72.02	0	2343353..2344567	-	404	184201686	-	KRH_20400	-	putative acyl-CoA dehydrogenase
2041	 65.88	-1	2344560..2344814	-	84	184201687	-	KRH_20410	-	hypothetical protein
2042	 78.83	+2	2344916..2345326	-	136	184201688	acpS	KRH_20420	-	holo-[acyl-carrier-protein] synthase
2043	 71.72	0	2345323..2346489	-	388	184201689	-	KRH_20430	-	putative esterase family protein
2044	 72.59	0	2346477..2348180	-	567	184201690	-	KRH_20440	-	hypothetical protein
2045	 74.09	0	2348645..2349910	+	421	184201691	-	KRH_20450	-	putative glycosyltransferase
2046	 68.58	0	2349965..2351008	+	347	184201692	gmd	KRH_20460	-	GDP-mannose 4,6-dehydratase
2047	 71.58	0	2351035..2352072	+	345	184201693	fcl	KRH_20470	-	GDP-L-fucose synthase
2048	 72.40	0	2352150..2352881	-	243	184201694	-	KRH_20480	-	hypothetical protein
2049	 70.56	0	2353050..2354309	-	419	184201695	-	KRH_20490	-	hypothetical protein
2050	 74.50	0	2354303..2355157	-	284	184201696	-	KRH_20500	-	putative glycosyltransferase
2051	 70.70	0	2355528..2356172	+	214	184201697	-	KRH_20510	-	hypothetical protein
2052	 69.28	0	2356169..2357431	+	420	184201698	-	KRH_20520	-	hypothetical protein
2053	 74.96	+1	2357442..2359130	+	562	184201699	-	KRH_20530	-	hypothetical protein
2054	 73.18	0	2359218..2359754	+	178	184201700	-	KRH_20540	-	hypothetical protein
2055	 74.01	0	2359760..2360875	+	371	184201701	-	KRH_20550	-	putative glycosyltransferase
2056	 63.58	-1	2361044..2361205	+	53	184201702	-	KRH_20560	-	hypothetical protein
2057	 69.42	0	2361322..2362518	+	398	184201703	serA	KRH_20570	-	D-3-phosphoglycerate dehydrogenase
2058	 70.41	0	2362820..2364529	+	569	184201704	-	KRH_20580	-	DASS family transporter
2059	 70.23	0	2364797..2365414	-	205	184201705	dps	KRH_20590	-	DNA-binding protein Dps
2060	 74.52	0	2365602..2367740	+	712	184201706	fadH	KRH_20600	-	2,4-dienoyl-CoA reductase
2061	 72.63	0	2367895..2368716	+	273	184201707	-	KRH_20610	-	hypothetical protein
2062	 74.42	0	2368718..2369233	+	171	184201708	-	KRH_20620	-	hypothetical protein
2063	 73.23	0	2369237..2370820	+	527	184201709	pstP	KRH_20630	-	serine/threonine phosphatase
2064	 72.40	0	2370817..2372595	+	592	184201710	rodA	KRH_20640	-	putative cell division protein RodA
2065	 66.39	-1	2372592..2374034	+	480	184201711	pbpA	KRH_20650	-	penicillin-binding protein
2066	 73.17	0	2374031..2375767	+	578	184201712	-	KRH_20660	-	serine/threonine protein kinase
2067	 73.36	0	2375773..2377713	+	646	184201713	-	KRH_20670	-	serine/threonine protein kinase
2068	 72.90	0	2377829..2378470	-	213	184201714	trpG	KRH_20680	-	anthranilate synthase component II
2069	 72.27	0	2378659..2379354	+	231	184201715	-	KRH_20690	-	hypothetical protein
2070	 76.15	+1	2379351..2379677	+	108	184201716	-	KRH_20700	-	hypothetical protein
2071	 66.13	-1	2379789..2380343	-	184	184201717	-	KRH_20710	-	hypothetical protein
2072	 69.24	0	2380496..2381155	-	219	184201718	-	KRH_20720	-	putative oxidoreductase
2073	 68.56	0	2381377..2381904	-	175	184201719	-	KRH_20730	-	putative oxidoreductase
2074	 69.90	0	2382046..2382756	-	236	184201720	-	KRH_20740	-	putative alkylated DNA repair protein
2075	 68.51	0	2383038..2384015	+	325	184201721	-	KRH_20750	-	hypothetical protein
2076	 69.98	0	2384141..2384956	-	271	184201722	-	KRH_20760	-	putative hydrolase
2077	 67.09	-1	2385097..2385810	-	237	184201723	-	KRH_20770	-	hypothetical protein
2078	 68.49	0	2385810..2386631	-	273	184201724	-	KRH_20780	-	putative ABC transporter ATP-binding protein
2079	 65.29	-1	2386754..2387116	-	120	184201725	-	KRH_20790	-	GntR family transcriptional regulator
2080	 69.68	0	2387266..2388162	-	298	184201726	crtEb	KRH_20800	-	lycopene elongase
2081	 70.34	0	2388131..2388484	-	117	184201727	crtYf	KRH_20810	-	C50 carotenoid epsilon cyclase
2082	 73.86	0	2388481..2389050	-	189	184201728	crtYe	KRH_20820	-	C50 carotenoid epsilon cyclase
2083	 74.71	0	2389050..2390915	-	621	184201729	crtI	KRH_20830	-	phytoene desaturase
2084	 73.79	0	2390912..2391823	-	303	184201730	crtB	KRH_20840	-	phytoene synthase
2085	 76.15	+1	2391823..2392971	-	382	184201731	crtE	KRH_20850	-	geranylgeranyl pyrophosphate synthase
2086	 74.13	0	2392968..2393597	-	209	184201732	-	KRH_20860	-	MarR family transcriptional regulator
2087	 74.02	0	2393754..2394623	-	289	184201733	-	KRH_20870	-	hypothetical protein
2088	 74.26	0	2394669..2395709	-	346	184201734	-	KRH_20880	-	hypothetical protein
2089	 68.48	0	2395933..2396262	+	109	184201735	-	KRH_20890	-	hypothetical protein
2090	 74.10	0	2396503..2397498	+	331	184201736	metF	KRH_20900	-	5,10-methylenetetrahydrofolate reductase
2091	 75.73	+1	2397661..2400099	+	812	184201737	metE	KRH_20910	-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase
2092	 74.17	0	2400180..2401499	+	439	184201738	-	KRH_20920	-	putative O-acetylhomoserine (thiol)-lyase
2093	 72.37	0	2401625..2402869	+	414	184201739	metB	KRH_20930	-	cystathionine gamma-synthase
2094	 71.10	0	2408690..2410405	-	571	184201740	-	KRH_20940	-	putative fatty-acid--CoA ligase
2095	 68.81	0	2410449..2411708	-	419	184201741	-	KRH_20950	-	putative glutaryl-CoA dehydrogenase
2096	 71.38	0	2411738..2413837	-	699	184201742	fadB	KRH_20960	-	fatty oxidation complex alpha subunit
2097	 75.37	+1	2414008..2415294	-	428	184201743	-	KRH_20970	-	TetR family transcriptional regulator
2098	 64.04	-1	2415565..2417202	+	545	184201744	-	KRH_20980	-	putative peptide ABC transporter peptide-binding protein
2099	 65.91	-1	2417291..2418217	+	308	184201745	-	KRH_20990	-	putative peptide ABC transporter permease protein
2100	 68.57	0	2418210..2419310	+	366	184201746	-	KRH_21000	-	putative peptide ABC transporter permease protein
2101	 67.73	0	2419307..2420995	+	562	184201747	-	KRH_21010	-	putative peptide ABC transporter ATP-binding protein
2102	 73.33	0	2421124..2422038	-	304	184201748	-	KRH_21020	-	hypothetical protein
2103	 65.75	-1	2422035..2422469	-	144	184201749	-	KRH_21030	-	hypothetical protein
2104	 75.35	+1	2422705..2423982	+	425	184201750	-	KRH_21040	-	MFS transporter
2105	 68.19	0	2424069..2425640	-	523	184201751	ansP	KRH_21050	-	L-asparagine permease
2106	 77.68	+1	2425760..2426095	-	111	184201752	-	KRH_21060	-	hypothetical protein
2107	 71.49	0	2426200..2426697	+	165	184201753	-	KRH_21070	-	putative acetyltransferase
2108	 68.84	0	2426682..2427326	-	214	184201754	-	KRH_21080	-	putative acetyltransferase
2109	 72.99	0	2427329..2427850	-	173	184201755	-	KRH_21090	-	MarR family transcriptional regulator
2110	 76.21	+1	2427856..2428599	-	247	184201756	-	KRH_21100	-	NAD(P)H-dependent FMN reductase
2111	 71.19	0	2428698..2429891	-	397	184201757	-	KRH_21110	-	hypothetical protein
2112	 73.78	0	2430057..2430815	+	252	184201758	-	KRH_21120	-	hypothetical protein
2113	 76.36	+1	2430995..2432665	+	556	184201759	-	KRH_21130	-	hypothetical protein
2114	 73.90	0	2432662..2434404	+	580	184201760	accA	KRH_21140	-	acyl-CoA carboxylase alpha chain
2115	 73.48	0	2434401..2435075	+	224	184201761	-	KRH_21150	-	GntR family transcriptional regulator
2116	 73.22	0	2434741..2436006	-	421	184201762	-	KRH_21160	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.