IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1935	 75.92	+1	2221362..2222150	+	262	184201581	-	KRH_19350	-	hypothetical protein
1936	 76.78	+1	2222184..2222816	-	210	184201582	-	KRH_19360	-	hypothetical protein
1937	 72.64	0	2222869..2223705	-	278	184201583	-	KRH_19370	-	hypothetical protein
1938	 71.03	0	2224085..2225389	-	434	184201584	serS	KRH_19380	-	seryl-tRNA synthetase
1939	 72.62	0	2225515..2226489	+	324	184201585	-	KRH_19390	-	hypothetical protein
1940	 70.01	0	2226535..2227938	-	467	184201586	-	KRH_19400	-	putative gluconate permease
1941	 72.95	0	2227935..2228936	-	333	184201587	pheA	KRH_19410	-	prephenate dehydratase
1942	 71.43	0	2228933..2229268	-	111	184201588	-	KRH_19420	-	hypothetical protein
1943	 67.80	0	2229406..2230902	-	498	184201589	-	KRH_19430	-	putative L-asparagine permease
1944	 73.35	0	2231364..2233040	+	558	184201590	-	KRH_19440	-	putative hydrolase
1945	 71.77	0	2233119..2234765	+	548	184201591	-	KRH_19450	-	putative acetolactate synthase large subunit
1946	 69.98	0	2234857..2236485	+	542	184201592	-	KRH_19460	-	putative hydrolase
1947	 67.83	0	2236684..2238063	-	459	184201593	-	KRH_19470	-	aldehyde dehydrogenase
1948	 68.90	0	2238390..2239865	+	491	184201594	gabD	KRH_19480	-	succinate-semialdehyde dehydrogenase
1949	 70.54	0	2239952..2241295	+	447	184201595	gabT	KRH_19490	-	4-aminobutyrate aminotransferase
1950	 68.70	0	2241591..2243066	+	491	184201596	gabP	KRH_19500	-	gamma-aminobutyrate permease
1951	 72.96	0	2243102..2244658	+	518	184201597	-	KRH_19510	-	amidase
1952	 69.60	0	2244795..2246429	+	544	184201598	pgm	KRH_19520	-	phosphoglucomutase
1953	 61.11	-2	2246493..2246636	+	47	184201599	-	KRH_19530	-	hypothetical protein
1954	 72.07	0	2246643..2246753	+	36	184201600	-	KRH_19540	-	hypothetical protein
1955	 75.07	+1	2246929..2248011	+	360	184201601	-	KRH_19550	-	hypothetical protein
1956	 70.69	0	2248064..2249629	-	521	184201602	-	KRH_19560	-	putative sulfatase
1957	 74.07	0	2249774..2250556	-	260	184201603	-	KRH_19570	-	DtxR family transcriptional regulator
1958	 66.20	-1	2250936..2251790	-	284	184201604	-	KRH_19580	-	putative 3-hydroxyacyl-CoA dehydrogenase
1959	 71.26	0	2252045..2253460	+	471	184201605	-	KRH_19590	-	putative uracil permease
1960	 69.28	0	2253729..2254799	-	356	184201606	-	KRH_19600	-	putative enoyl-CoA hydratase
1961	 74.02	0	2254911..2256107	-	398	184201607	-	KRH_19610	-	TDT family transporter
1962	 76.30	+1	2256224..2257126	+	300	184201608	-	KRH_19620	-	LysR family transcriptional regulator
1963	 74.11	0	2257264..2259291	-	675	184201609	-	KRH_19630	-	putative ABC transporter ATP-binding protein
1964	 71.53	0	2259324..2260166	-	280	184201610	-	KRH_19640	-	putative ABC transporter permease protein
1965	 68.03	0	2260322..2261278	-	318	184201611	-	KRH_19650	-	putative ABC transporter permease protein
1966	 71.23	0	2261283..2262926	-	547	184201612	-	KRH_19660	-	putative ABC transporter substrate-binding protein
1967	 75.98	+1	2263039..2263242	-	67	184201613	-	KRH_19670	-	hypothetical protein
1968	 73.80	0	2263480..2264376	-	298	184201614	-	KRH_19680	-	putative esterase
1969	 74.84	+1	2264369..2265604	-	411	184201615	-	KRH_19690	-	hypothetical protein
1970	 69.54	0	2265610..2266131	-	173	184201616	-	KRH_19700	-	hypothetical protein
1971	 73.00	0	2266415..2267362	-	315	184201617	frk	KRH_19710	-	putative fructokinase
1972	 66.24	-1	2267757..2269172	+	471	184201618	gap	KRH_19720	-	glyceraldehyde-3-phosphate dehydrogenase
1973	 74.34	0	2269398..2270792	-	464	184201619	-	KRH_19730	-	M18 family peptidase
1974	 71.51	0	2270776..2271972	-	398	184201620	-	KRH_19740	-	hypothetical protein
1975	 68.98	0	2272024..2272758	-	244	184201621	-	KRH_19750	-	hypothetical protein
1976	 73.54	0	2272950..2273444	+	164	184201622	-	KRH_19760	-	hypothetical protein
1977	 70.34	0	2273441..2273767	+	108	184201623	-	KRH_19770	-	putative uricase
1978	 65.54	-1	2273841..2274725	+	294	184201624	-	KRH_19780	-	putative uricase
1979	 69.92	0	2274817..2276385	+	522	184201625	-	KRH_19790	-	putative uric acid permease
1980	 71.52	0	2276571..2277332	-	253	184201626	-	KRH_19800	-	IclR family transcriptional regulator
1981	 68.03	0	2277554..2279161	+	535	184201627	aceB	KRH_19810	-	malate synthase
1982	 75.61	+1	2279158..2280588	+	476	184201628	-	KRH_19820	-	hypothetical protein
1983	 70.16	0	2280585..2281442	+	285	184201629	-	KRH_19830	-	hypothetical protein
1984	 69.33	0	2281502..2282065	-	187	184201630	-	KRH_19840	-	putative acetyltransferase
1985	 64.36	-1	2282121..2282597	-	158	184201631	-	KRH_19850	-	hypothetical protein
1986	 68.10	0	2282753..2283799	-	348	184201632	adhC	KRH_19860	-	NADP-dependent alcohol dehydrogenase
1987	 72.26	0	2283996..2284781	+	261	184201633	hyi	KRH_19870	-	putative hydroxypyruvate isomerase
1988	 77.81	+1	2284975..2286105	+	376	184201634	-	KRH_19880	-	putative glycerate kinase
1989	 69.55	0	2286582..2287901	+	439	184201635	-	KRH_19890	-	putative allantoinase
1990	 71.03	0	2288039..2288818	+	259	184201636	-	KRH_19900	-	hypothetical protein
1991	 75.58	+1	2288796..2289053	-	85	184201637	-	KRH_19910	-	hypothetical protein
1992	 71.05	0	2289373..2290308	+	311	184201638	-	KRH_19920	-	hypothetical protein
1993	 68.74	0	2290393..2291355	+	320	184201639	-	KRH_19930	-	putative aldo/keto reductase
1994	 67.03	-1	2291500..2292054	+	184	184201640	-	KRH_19940	-	PfpI family peptidase
1995	 70.78	0	2292216..2293310	-	364	184201641	-	KRH_19950	-	putative serine--pyruvate aminotransferase
1996	 70.27	0	2293520..2294713	-	397	184201642	-	KRH_19960	-	hypothetical protein
1997	 72.73	0	2294710..2294907	-	65	184201643	-	KRH_19970	-	Xre family DNA-binding protein
1998	 71.04	0	2295035..2296336	-	433	184201644	-	KRH_19980	-	MFS transporter
1999	 64.52	-1	2296527..2296991	-	154	184201645	-	KRH_19990	-	hypothetical protein
2000	 75.51	+1	2297059..2297997	-	312	184201646	-	KRH_20000	-	hypothetical protein
2001	 74.53	0	2297994..2299328	-	444	184201647	-	KRH_20010	-	hypothetical protein
2002	 77.75	+1	2299325..2300767	-	480	184201648	-	KRH_20020	-	hypothetical protein
2003	 73.44	0	2300859..2301227	+	122	184201649	-	KRH_20030	-	GntR family transcriptional regulator
2004	 66.92	-1	2301391..2301780	+	129	184201650	-	KRH_20040	-	hypothetical protein
2005	 75.68	+1	2301785..2302405	+	206	184201651	mobA	KRH_20050	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
2006	 74.14	0	2302428..2303819	+	463	184201652	-	KRH_20060	-	putative molybdenum cofactor biosynthesis protein
2007	 67.27	0	2303977..2304477	-	166	184201653	-	KRH_20070	-	hypothetical protein
2008	 70.72	0	2304724..2309808	-	1694	184201654	gdh	KRH_20080	-	NAD(+)-dependent glutamate dehydrogenase
2009	 70.86	0	2310145..2311002	+	285	184201655	-	KRH_20090	-	putative formate/nitrite transporter
2010	 72.34	0	2311172..2311717	-	181	184201656	-	KRH_20100	-	phosphoglycerate mutase family protein
2011	 72.97	0	2311993..2312436	-	147	184201657	-	KRH_20110	-	hypothetical protein
2012	 71.38	0	2312535..2313170	+	211	184201658	-	KRH_20120	-	hypothetical protein
2013	 74.22	0	2313167..2314198	+	343	184201659	-	KRH_20130	-	putative oxidoreductase
2014	 73.62	0	2314326..2314886	+	186	184201660	-	KRH_20140	-	hypothetical protein
2015	 70.65	0	2315024..2315500	-	158	184201661	-	KRH_20150	-	hypothetical protein
2016	 70.53	0	2315558..2316256	+	232	184201662	-	KRH_20160	-	hypothetical protein
2017	 75.80	+1	2316515..2317390	+	291	184201663	-	KRH_20170	-	hypothetical protein
2018	 68.30	0	2317784..2318272	-	162	184201664	-	KRH_20180	-	transcription regulator AsnC
2019	 70.46	0	2318488..2319621	+	377	184201665	-	KRH_20190	-	putative phenylalanine aminotransferase
2020	 69.45	0	2319629..2321065	+	478	184201666	aroP	KRH_20200	-	putative aromatic amino acid transport protein
2021	 73.22	0	2321250..2322713	-	487	184201667	-	KRH_20210	-	hypothetical protein
2022	 70.18	0	2322829..2323227	-	132	184201668	-	KRH_20220	-	putative acetyltransferase
2023	 70.25	0	2323271..2323549	-	92	184201669	-	KRH_20230	-	hypothetical protein
2024	 68.41	0	2323593..2324684	-	363	184201670	-	KRH_20240	-	hypothetical protein
2025	 57.70	-2	2324975..2326078	+	367	184201671	-	KRH_20250	-	hypothetical protein
2026	 75.17	+1	2326125..2326724	-	199	184201672	-	KRH_20260	-	putative methyltransferase
2027	 74.40	0	2326884..2327633	+	249	184201673	-	KRH_20270	-	hypothetical protein
2028	 69.43	0	2327948..2329324	+	458	184201674	glpT	KRH_20280	-	glycerol-3-phosphate transporter
2029	 70.92	0	2329514..2329960	+	148	184201675	-	KRH_20290	-	hypothetical protein
2030	 70.98	0	2330116..2331345	-	409	184201676	-	KRH_20300	-	MFS transporter
2031	 71.73	0	2331480..2332229	-	249	184201677	-	KRH_20310	-	hypothetical protein
2032	 72.22	0	2332563..2333102	+	179	184201678	gntK	KRH_20320	-	gluconokinase
2033	 72.74	0	2333316..2334452	-	378	184201679	rumB	KRH_20330	-	putative 23S rRNA (uracil-5-)-methyltransferase RumB
2034	 74.57	0	2335039..2335683	+	214	184201680	-	KRH_20340	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.