IslandPathversion 1.0

IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 70.94 STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1842	 73.91	0	2093349..2095460	-	703	184201488	-	KRH_18420	-	hypothetical protein
1843	 66.57	-1	2095586..2096668	-	360	184201489	-	KRH_18430	-	FemAB family protein
1844	 71.36	0	2096759..2098675	-	638	184201490	-	KRH_18440	-	hypothetical protein
1845	 73.05	0	2098958..2099239	-	93	184201491	ptsH	KRH_18450	-	phosphocarrier protein HPr
1846	 75.99	+1	2099294..2101030	-	578	184201492	ptsI	KRH_18460	-	phosphoenolpyruvate--protein phosphotransferase
1847	 74.02	0	2101030..2103369	-	779	184201493	-	KRH_18470	-	putative fructose-specific phosphotransferase system enzyme IIABC component
1848	 78.17	+1	2103416..2104597	-	393	184201494	fruK	KRH_18480	-	putative 1-phosphofructokinase
1849	 71.84	0	2104594..2105385	-	263	184201495	-	KRH_18490	-	DeoR family transcriptional regulator
1850	 70.62	0	2105570..2107315	+	581	184201496	-	KRH_18500	-	putative ABC transporter
1851	 70.50	0	2107312..2109243	+	643	184201497	-	KRH_18510	-	putative ABC transporter
1852	 72.48	0	2109317..2109952	+	211	184201498	-	KRH_18520	-	hypothetical protein
1853	 67.12	0	2110284..2111165	-	293	184201499	-	KRH_18530	-	DSBA oxidoreductase family protein
1854	 70.63	0	2111424..2112938	+	504	184201500	otsA	KRH_18540	-	alpha,alpha-trehalose-phosphate synthase
1855	 77.33	+1	2112931..2113746	+	271	184201501	otsB	KRH_18550	-	trehalose-phosphatase
1856	 71.90	0	2113748..2115007	+	419	184201502	-	KRH_18560	-	hypothetical protein
1857	 74.30	0	2115004..2115606	-	200	184201503	-	KRH_18570	-	TetR family transcriptional regulator
1858	 72.62	0	2115610..2117859	-	749	184201504	-	KRH_18580	-	hypothetical protein
1859	 70.63	0	2117939..2118721	+	260	184201505	-	KRH_18590	-	hypothetical protein
1860	 71.78	0	2118915..2119559	+	214	184201506	-	KRH_18600	-	putative acyltransferase
1861	 70.07	0	2119588..2121264	+	558	184201507	-	KRH_18610	-	putative FAD linked oxidase
1862	 69.06	0	2121474..2123480	-	668	184201508	acsA	KRH_18620	-	putative acetoacetyl-coenzyme A synthetase
1863	 71.10	0	2129476..2133624	-	1382	184201509	glgB	KRH_18630	-	1,4-alpha-glucan branching enzyme
1864	 67.97	0	2133688..2135457	-	589	184201510	treS	KRH_18640	-	trehalose synthase
1865	 70.36	0	2135552..2137720	-	722	184201511	glgE	KRH_18650	-	putative glucanase
1866	 72.41	0	2138149..2140779	+	876	184201512	-	KRH_18660	-	putative glycogen phosphorylase
1867	 72.97	0	2140862..2143018	-	718	184201513	-	KRH_18670	-	putative glycogen debranching enzyme
1868	 71.93	0	2143005..2143973	-	322	184201514	-	KRH_18680	-	rRNA methyltransferase
1869	 72.64	0	2144059..2145498	-	479	184201515	cysS	KRH_18690	-	cysteinyl-tRNA synthetase
1870	 75.56	+1	2145783..2146322	-	179	184201516	ispF	KRH_18700	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1871	 77.10	+1	2146622..2147359	-	245	184201517	ispD	KRH_18710	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1872	 64.40	-1	2147373..2147858	-	161	184201518	-	KRH_18720	-	hypothetical protein
1873	 67.99	0	2148014..2148619	+	201	184201519	-	KRH_18730	-	hypothetical protein
1874	 70.19	0	2148705..2149385	-	226	184201520	regX3	KRH_18740	-	two-component response regulator RegX3
1875	 71.19	0	2149382..2150575	-	397	184201521	senX3	KRH_18750	-	two-component histidine kinase SenX3
1876	 68.81	0	2150799..2151497	+	232	184201522	phoU	KRH_18760	-	putative phosphate transport system regulatory protein
1877	 68.38	0	2151591..2152349	-	252	184201523	gpmA	KRH_18770	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
1878	 76.52	+1	2152439..2153209	+	256	184201524	-	KRH_18780	-	hypothetical protein
1879	 69.52	0	2153315..2153665	-	116	184201525	-	KRH_18790	-	hypothetical protein
1880	 74.71	0	2153675..2154805	-	376	184201526	-	KRH_18800	-	putative amino acid lyase
1881	 75.34	+1	2154901..2155557	+	218	184201527	tmk	KRH_18810	-	thymidylate kinase
1882	 72.34	0	2155554..2156681	+	375	184201528	holB	KRH_18820	-	DNA polymerase III delta' subunit
1883	 73.04	0	2156699..2158267	+	522	184201529	-	KRH_18830	-	aminopeptidase
1884	 71.57	0	2158636..2161203	-	855	184201530	-	KRH_18840	-	cation-transporting ATPase
1885	 76.72	+1	2161539..2162264	-	241	184201531	-	KRH_18850	-	hypothetical protein
1886	 75.80	+1	2162318..2162536	-	72	184201532	-	KRH_18860	-	hypothetical protein
1887	 68.77	0	2162536..2164818	-	760	184201533	cstA	KRH_18870	-	carbon starvation protein
1888	 73.78	0	2164937..2165920	-	327	184201534	-	KRH_18880	-	putative oxidoreductase
1889	 73.83	0	2166342..2168045	-	567	184201535	-	KRH_18890	-	putative phosphoglucomutase
1890	 71.23	0	2168045..2168701	-	218	184201536	deoC	KRH_18900	-	deoxyribose-phosphate aldolase
1891	 71.68	0	2168793..2170088	-	431	184201537	pdp	KRH_18910	-	putative pyrimidine-nucleoside phosphorylase
1892	 68.26	0	2168967..2171480	+	837	184201538	-	KRH_18920	-	nucleoside transporter
1893	 73.40	0	2171514..2172449	+	311	184201539	deoR	KRH_18930	-	deoxyribonucleoside regulator
1894	 73.72	0	2172496..2174493	-	665	184201540	-	KRH_18940	-	hypothetical protein
1895	 72.29	0	2174604..2176577	-	657	184201541	-	KRH_18950	-	subtilisin family peptidase
1896	 68.78	0	2177255..2178247	+	330	184201542	-	KRH_18960	-	putative glycosyltransferase
1897	 66.60	-1	2178305..2179777	+	490	184201543	-	KRH_18970	-	hypothetical protein
1898	 69.41	0	2179805..2180971	-	388	184201544	-	KRH_18980	-	putative glycosyltransferase
1899	 73.73	0	2181024..2183174	-	716	184201545	-	KRH_18990	-	putative ATP-dependent DNA helicase
1900	 76.19	+1	2183743..2184141	+	132	184201546	-	KRH_19000	-	hypothetical protein
1901	 71.39	0	2184544..2186385	+	613	184201547	glsA	KRH_19010	-	glutaminase
1902	 76.01	+1	2186439..2187059	+	206	184201548	-	KRH_19020	-	hypothetical protein
1903	 68.45	0	2187391..2188008	+	205	184201549	-	KRH_19030	-	hypothetical protein
1904	 71.44	0	2188015..2189040	+	341	184201550	-	KRH_19040	-	putative inorganic phosphate transporter
1905	 65.38	-1	2189146..2189925	-	259	184201551	pstB	KRH_19050	-	phosphate transport system ATP-binding protein
1906	 68.28	0	2189957..2191075	-	372	184201552	pstA	KRH_19060	-	phosphate transport system permease protein
1907	 68.04	0	2191075..2192022	-	315	184201553	pstC	KRH_19070	-	phosphate transport system permease protein
1908	 69.02	0	2192169..2193272	-	367	184201554	pstS	KRH_19080	-	phosphate transport system phosphate-binding protein
1909	 72.37	0	2193495..2194652	+	385	184201555	-	KRH_19090	-	hypothetical protein
1910	 73.57	0	2194713..2196131	+	472	184201556	radA	KRH_19100	-	DNA repair protein RadA
1911	 69.46	0	2196417..2197490	+	357	184201557	-	KRH_19110	-	hypothetical protein
1912	 72.36	0	2197774..2198511	-	245	184201558	-	KRH_19120	-	hypothetical protein
1913	 76.06	+1	2198510..2199520	+	336	184201559	-	KRH_19130	-	putative adenine glycosylase
1914	 69.33	0	2199504..2200028	-	174	184201560	-	KRH_19140	-	putative acetyltransferase
1915	 68.54	0	2200139..2202757	-	872	184201561	clpC	KRH_19150	-	ATP-dependent Clp protease ATP-binding subunit ClpC
1916	 69.59	0	2203040..2203381	-	113	184201562	-	KRH_19160	-	LSR2-like protein
1917	 65.62	-1	2203621..2203908	-	95	184201563	-	KRH_19170	-	hypothetical protein
1918	 69.54	0	2203958..2205490	-	510	184201564	lysS	KRH_19180	-	lysyl-tRNA synthetase
1919	 73.19	0	2205515..2206357	-	280	184201565	panC	KRH_19190	-	pantoate--beta-alanine ligase
1920	 76.96	+1	2206360..2207340	-	326	184201566	-	KRH_19200	-	hypothetical protein
1921	 76.35	+1	2207393..2209405	-	670	184201567	-	KRH_19210	-	hypothetical protein
1922	 72.90	0	2209402..2209866	-	154	184201568	-	KRH_19220	-	hypothetical protein
1923	 73.91	0	2209898..2210449	-	183	184201569	-	KRH_19230	-	hypothetical protein
1924	 76.76	+1	2210437..2210961	-	174	184201570	folK	KRH_19240	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
1925	 69.57	0	2210961..2211374	-	137	184201571	folB	KRH_19250	-	dihydroneopterin aldolase
1926	 77.08	+1	2211382..2212437	-	351	184201572	folP	KRH_19260	-	dihydropteroate synthase
1927	 72.82	0	2212434..2213132	-	232	184201573	folE	KRH_19270	-	GTP cyclohydrolase I
1928	 68.03	0	2213133..2215262	-	709	184201574	ftsH	KRH_19280	-	cell division protein FtsH
1929	 66.12	-1	2215527..2216078	-	183	184201575	hpt	KRH_19290	-	hypoxanthine phosphoribosyltransferase
1930	 77.41	+1	2216075..2217154	-	359	184201576	tilS	KRH_19300	-	putative tRNA(Ile)-lysidine synthase
1931	 68.75	0	2217204..2217683	-	159	184201577	-	KRH_19310	-	hypothetical protein
1932	 72.10	0	2217718..2218821	-	367	184201578	-	KRH_19320	-	hypothetical protein
1933	 78.14	+1	2218891..2220459	-	522	184201579	-	KRH_19330	-	putative D-alanyl-D-alanine carboxypeptidase
1934	 65.12	-1	2220639..2221154	+	171	184201580	ppa	KRH_19340	-	inorganic pyrophosphatase
1935	 75.92	+1	2221362..2222150	+	262	184201581	-	KRH_19350	-	hypothetical protein
1936	 76.78	+1	2222184..2222816	-	210	184201582	-	KRH_19360	-	hypothetical protein
1937	 72.64	0	2222869..2223705	-	278	184201583	-	KRH_19370	-	hypothetical protein
1938	 71.03	0	2224085..2225389	-	434	184201584	serS	KRH_19380	-	seryl-tRNA synthetase
1939	 72.62	0	2225515..2226489	+	324	184201585	-	KRH_19390	-	hypothetical protein
1940	 70.01	0	2226535..2227938	-	467	184201586	-	KRH_19400	-	putative gluconate permease
1941	 72.95	0	2227935..2228936	-	333	184201587	pheA	KRH_19410	-	prephenate dehydratase
70.94	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.