IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
105	 73.23	0	115585..116574	+	329	184199751	-	KRH_01050	-	hypothetical protein
106	 71.60	0	116626..117516	+	296	184199752	-	KRH_01060	-	hypothetical protein
107	 72.57	0	117829..118794	+	321	184199753	-	KRH_01070	-	hypothetical protein
108	 68.97	0	118928..119665	-	245	184199754	-	KRH_01080	-	putative amino acid ABC transporter ATP-binding protein
109	 66.96	-1	119658..120332	-	224	184199755	-	KRH_01090	-	putative amino acid ABC transporter permease protein
110	 67.67	0	120329..121126	-	265	184199756	-	KRH_01100	-	putative amino acid ABC transporter amino acid-binding protein
111	 69.66	0	121171..122304	-	377	184199757	-	KRH_01110	-	putative amino acid lyase
112	 74.24	0	122484..123170	-	228	184199758	pdxT	KRH_01120	-	pyridoxine biosynthesis protein PdxT
113	 70.54	0	123167..124096	-	309	184199759	pdxS	KRH_01130	-	pyridoxine biosynthesis protein PdxS
114	 69.48	0	124249..125421	+	390	184199760	-	KRH_01140	-	hypothetical protein
115	 77.47	+1	125418..127175	+	585	184199761	-	KRH_01150	-	GntR family transcriptional regulator
116	 72.19	0	127278..127856	+	192	184199762	-	KRH_01160	-	hypothetical protein
117	 72.54	0	127936..128361	+	141	184199763	-	KRH_01170	-	hypothetical protein
118	 72.73	0	128583..131189	-	868	184199764	-	KRH_01180	-	putative copper-transporting ATPase
119	 67.62	0	131182..131391	-	69	184199765	-	KRH_01190	-	heavy metal transport/detoxification protein
120	 67.28	0	131448..131774	-	108	184199766	-	KRH_01200	-	hypothetical protein
121	 71.47	0	131849..132181	+	110	184199767	-	KRH_01210	-	hypothetical protein
122	 61.54	-2	132256..132567	-	103	184199768	-	KRH_01220	-	hypothetical protein
123	 71.27	0	132772..133140	-	122	184199769	-	KRH_01230	-	hypothetical protein
124	 69.26	0	133281..133781	+	166	184199770	-	KRH_01240	-	MarR family transcriptional regulator
125	 70.31	0	133817..134503	+	228	184199771	-	KRH_01250	-	DtxR family transcriptional regulator
126	 67.80	0	134616..134969	-	117	184199772	-	KRH_01260	-	hypothetical protein
127	 70.27	0	135129..135710	+	193	184199773	-	KRH_01270	-	hypothetical protein
128	 70.80	0	135835..136704	-	289	184199774	mntB	KRH_01280	-	putative manganese ABC transporter permease protein
129	 76.27	+1	136701..137648	-	315	184199775	mntA	KRH_01290	-	putative manganese ABC transporter ATP-binding protein
130	 68.95	0	137645..138562	-	305	184199776	mntC	KRH_01300	-	manganese ABC transporter substrate-binding protein
131	 66.03	-1	138649..139122	-	157	184199777	-	KRH_01310	-	hypothetical protein
132	 70.99	0	139312..141414	+	700	184199778	-	KRH_01320	-	hypothetical protein
133	 71.10	0	141695..145303	+	1202	184199779	putA	KRH_01330	-	proline dehydrogenase/delta-1-pyrroline-5- carboxylate dehydrogenase
134	 72.06	0	145519..145722	-	67	184199780	-	KRH_01340	-	hypothetical protein
135	 62.85	-2	145801..146193	+	130	184199781	-	KRH_01350	-	hypothetical protein
136	 63.92	-1	146221..146730	-	169	184199782	-	KRH_01360	-	hypothetical protein
137	 67.07	-1	146844..147092	+	82	184199783	-	KRH_01370	-	hypothetical protein
138	 67.05	-1	147102..147359	+	85	184199784	-	KRH_01380	-	hypothetical protein
139	 74.56	0	147490..148857	-	455	184199785	-	KRH_01390	-	hypothetical protein
140	 74.83	+1	148981..149274	-	97	184199786	-	KRH_01400	-	hypothetical protein
141	 65.58	-1	149585..150778	+	397	184199787	fdhA	KRH_01410	-	glutathione-independent formaldehyde dehydrogenase
142	 72.64	0	150892..153555	-	887	184199788	-	KRH_01420	-	putative UvrABC system protein A
143	 73.22	0	153595..154296	-	233	184199789	-	KRH_01430	-	TetR family transcriptional regulator
144	 70.51	0	154513..155943	+	476	184199790	-	KRH_01440	-	putative oxidoreductase
145	 77.71	+1	155974..157023	-	349	184199791	-	KRH_01450	-	hypothetical protein
146	 72.59	0	157099..158550	+	483	184199792	-	KRH_01460	-	MFS transporter
147	 75.69	+1	158681..160696	+	671	184199793	-	KRH_01470	-	hypothetical protein
148	 70.25	0	160936..162498	-	520	184199794	-	KRH_01480	-	putative purine permease
149	 66.87	-1	162598..163101	+	167	184199795	-	KRH_01490	-	purine phosphoribosyltransferase
150	 70.32	0	163321..164553	-	410	184199796	ackA	KRH_01500	-	acetate kinase
151	 70.82	0	164688..166781	-	697	184199797	pta	KRH_01510	-	phosphate acetyltransferase
152	 71.74	0	166891..167304	+	137	184199798	-	KRH_01520	-	hypothetical protein
153	 73.87	0	167321..168250	+	309	184199799	-	KRH_01530	-	hypothetical protein
154	 70.06	0	168337..169809	-	490	184199800	-	KRH_01540	-	putative hypoxanthine/guanine permease
155	 69.72	0	170026..171465	+	479	184199801	fprA	KRH_01550	-	putative ferredoxin--NADP(+) reductase
156	 67.40	0	171631..172725	+	364	184199802	ssuD	KRH_01560	-	alkanesulfonate monooxygenase
157	 72.28	0	172764..174098	-	444	184199803	-	KRH_01570	-	FAD-linked oxidase
158	 78.06	+1	174110..174346	+	78	184199804	-	KRH_01580	-	hypothetical protein
159	 73.95	0	174384..175331	+	315	184199805	-	KRH_01590	-	hypothetical protein
160	 76.19	+1	176051..176533	+	160	184199806	-	KRH_01600	-	hypothetical protein
161	 71.80	0	176740..178629	-	629	184199807	aglA	KRH_01610	-	putative alpha-glucosidase
162	 67.91	0	179022..179984	+	320	184199808	-	KRH_01620	-	hypothetical protein
163	 74.52	0	180097..181242	-	381	184199809	-	KRH_01630	-	hypothetical protein
164	 69.64	0	181247..182053	-	268	184199810	xthA	KRH_01640	-	exodeoxyribonuclease III
165	 66.90	-1	182192..183451	+	419	184199811	-	KRH_01650	-	putative cardiolipin synthase
166	 73.79	0	183711..185141	-	476	184199812	-	KRH_01660	-	putative FMNH2-dependent monooxygenase
167	 70.72	0	185143..185907	-	254	184199813	-	KRH_01670	-	putative oxidoreductase
168	 71.98	0	186227..187618	+	463	184199814	-	KRH_01680	-	Na(+)/H(+) antiporter
169	 70.41	0	187840..188667	-	275	184199815	nadE	KRH_01690	-	NH(3)-dependent NAD(+) synthetase
170	 68.33	0	188804..189586	+	260	184199816	echA	KRH_01700	-	enoyl-CoA hydratase
171	 70.65	0	189961..190362	+	133	184199817	-	KRH_01710	-	putative molybdenum-pterin-binding protein
172	 68.23	0	190362..191195	+	277	184199818	modA	KRH_01720	-	putative molybdenum transport molybdate-binding protein ModA
173	 74.81	+1	191192..193021	+	609	184199819	modB/modC	KRH_01730	-	putative molybdenum ABC transporter
174	 70.57	0	193174..193968	-	264	184199820	-	KRH_01740	-	hypothetical protein
175	 74.05	0	193965..194966	-	333	184199821	-	KRH_01750	-	putative ABC transporter ATP-binding protein
176	 69.35	0	195117..195302	-	61	184199822	-	KRH_01760	-	hypothetical protein
177	 65.31	-1	195624..195917	+	97	184199823	-	KRH_01770	-	hypothetical protein
178	 71.56	0	195927..196559	+	210	184199824	-	KRH_01780	-	hypothetical protein
179	 69.65	0	196761..197831	-	356	184199825	-	KRH_01790	-	hypothetical protein
180	 68.65	0	197895..198398	-	167	184199826	-	KRH_01800	-	hypothetical protein
181	 67.07	-1	198507..199001	+	164	184199827	-	KRH_01810	-	hypothetical protein
182	 65.42	-1	199038..199598	-	186	184199828	-	KRH_01820	-	putative acetyltransferase
183	 70.53	0	199595..201637	-	680	184199829	-	KRH_01830	-	hypothetical protein
184	 72.60	0	202101..202859	+	252	184199830	-	KRH_01840	-	3-hydroxyacyl-CoA dehydrogenase
185	 68.71	0	203069..203998	-	309	184199831	-	KRH_01850	-	putative oxidoreductase
186	 72.22	0	204135..205160	-	341	184199832	-	KRH_01860	-	hypothetical protein
187	 74.75	0	205259..205852	-	197	184199833	-	KRH_01870	-	TetR family transcriptional regulator
188	 72.83	0	205949..207181	+	410	184199834	-	KRH_01880	-	drug resistance efflux protein
189	 72.94	0	207371..208741	+	456	184199835	-	KRH_01890	-	hypothetical protein
190	 69.23	0	208748..209371	+	207	184199836	tdk	KRH_01900	-	thymidine kinase
191	 71.12	0	209445..210005	+	186	184199837	pyrE	KRH_01910	-	orotate phosphoribosyltransferase
192	 71.94	0	209998..210717	+	239	184199838	-	KRH_01920	-	RNA methyltransferase
193	 69.13	0	210797..212176	+	459	184199839	-	KRH_01930	-	putative lipase
194	 66.57	-1	212425..213447	+	340	184199840	fbaA	KRH_01940	-	fructose-bisphosphate aldolase class II
195	 73.84	0	213534..214928	+	464	184199841	-	KRH_01950	-	putative amidohydrolase
196	 67.28	0	215037..216671	+	544	184199842	abgT	KRH_01960	-	aminobenzoyl-glutamate transport protein
197	 72.73	0	216723..217184	+	153	184199843	-	KRH_01970	-	hypothetical protein
198	 72.18	0	217379..218467	+	362	184199844	ald	KRH_01980	-	alanine dehydrogenase
199	 71.09	0	218672..220162	-	496	184199845	aroP	KRH_01990	-	putative aromatic amino acid transport protein
200	 72.29	0	220405..221577	+	390	184199846	-	KRH_02000	-	hypothetical protein
201	 67.86	0	221846..225706	-	1286	184199847	-	KRH_02010	-	subtilisin family peptidase
202	 68.99	0	225970..227259	+	429	184199848	purA	KRH_02020	-	adenylosuccinate synthetase
203	 67.76	0	227332..228879	-	515	184199849	lysP	KRH_02030	-	lysine-specific permease
204	 72.02	0	229006..229341	-	111	184199850	-	KRH_02040	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.