IslandPathversion 1.0

IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 70.94 STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1476	 68.77	0	1668182..1668703	-	173	184201122	-	KRH_14760	-	hypothetical protein
1477	 75.62	+1	1668769..1669662	-	297	184201123	-	KRH_14770	-	hypothetical protein
1478	 76.17	+1	1669659..1670384	-	241	184201124	-	KRH_14780	-	hypothetical protein
1479	 70.98	0	1670561..1671811	-	416	184201125	ftsZ	KRH_14790	-	cell division protein FtsZ
1480	 75.37	+1	1672049..1673185	-	378	184201126	ftsQ	KRH_14800	-	putative cell division protein FtsQ
1481	 76.62	+1	1673185..1674591	-	468	184201127	murC	KRH_14810	-	UDP-N-acetylmuramate--L-alanine ligase
1482	 75.93	+1	1674620..1675753	-	377	184201128	murG	KRH_14820	-	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1483	 70.78	0	1675750..1677111	-	453	184201129	ftsW	KRH_14830	-	cell division protein FtsW
1484	 73.80	0	1677111..1678652	-	513	184201130	murD	KRH_14840	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1485	 68.52	0	1678731..1679864	-	377	184201131	mraY	KRH_14850	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
1486	 73.50	0	1679870..1681348	-	492	184201132	murF	KRH_14860	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
1487	 74.71	0	1681345..1682985	-	546	184201133	murE	KRH_14870	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
1488	 70.33	0	1683107..1684960	-	617	184201134	ftsI	KRH_14880	-	peptidoglycan synthase FtsI precursor
1489	 74.02	0	1685046..1685657	-	203	184201135	-	KRH_14890	-	hypothetical protein
1490	 72.15	0	1685654..1686637	-	327	184201136	mraW	KRH_14900	-	S-adenosyl-methyltransferase MraW
1491	 65.74	-1	1687084..1687515	-	143	184201137	mraZ	KRH_14910	-	MraZ protein
1492	 68.43	0	1687776..1688171	-	131	184201138	-	KRH_14920	-	hypothetical protein
1493	 73.61	0	1688222..1689460	-	412	184201139	dinB	KRH_14930	-	DNA polymerase IV
1494	 75.02	+1	1689691..1690803	+	370	184201140	-	KRH_14940	-	polyprenyl synthase
1495	 72.26	0	1690924..1691316	-	130	184201141	-	KRH_14950	-	hypothetical protein
1496	 75.67	+1	1691464..1692585	+	373	184201142	-	KRH_14960	-	putative lysozyme
1497	 75.77	+1	1692590..1694446	+	618	184201143	-	KRH_14970	-	serine/threonine protein kinase
1498	 69.82	0	1694532..1695926	-	464	184201144	-	KRH_14980	-	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
1499	 71.46	0	1695936..1696790	-	284	184201145	-	KRH_14990	-	putative acyltransferase
1500	 73.86	0	1696920..1697711	+	263	184201146	-	KRH_15000	-	putative esterase
1501	 74.88	+1	1697708..1698121	+	137	184201147	-	KRH_15010	-	hypothetical protein
1502	 70.65	0	1698307..1700115	+	602	184201148	-	KRH_15020	-	putative fatty-acid--CoA ligase
1503	 68.49	0	1700174..1701598	-	474	184201149	mtr	KRH_15030	-	mycothiol reductase
1504	 71.25	0	1701713..1705162	-	1149	184201150	pyc	KRH_15040	-	pyruvate carboxylase
1505	 74.43	0	1705370..1706206	+	278	184201151	-	KRH_15050	-	putative chromosome partitioning protein
1506	 70.55	0	1706418..1707035	-	205	184201152	-	KRH_15060	-	MerR family transcriptional regulator
1507	 74.46	0	1707180..1707692	-	170	184201153	-	KRH_15070	-	hypothetical protein
1508	 75.03	+1	1707689..1708597	-	302	184201154	-	KRH_15080	-	MerR family transcriptional regulator
1509	 67.57	0	1708606..1709049	-	147	184201155	-	KRH_15090	-	hypothetical protein
1510	 66.93	-1	1709083..1709469	-	128	184201156	gcvH	KRH_15100	-	glycine cleavage system H protein
1511	 70.24	0	1709654..1711054	+	466	184201157	-	KRH_15110	-	putative cation transporter
1512	 69.57	0	1711204..1711893	+	229	184201158	-	KRH_15120	-	hypothetical protein
1513	 75.12	+1	1711996..1713012	-	338	184201159	-	KRH_15130	-	putative ATP-binding protein
1514	 72.45	0	1713085..1714797	+	570	184201160	-	KRH_15140	-	putative Na(+)/H(+) antiporter
1515	 73.82	0	1714928..1716130	-	400	184201161	-	KRH_15150	-	aminotransferase
1516	 70.33	0	1716158..1716703	-	181	184201162	-	KRH_15160	-	hypothetical protein
1517	 70.18	0	1716929..1717696	+	255	184201163	-	KRH_15170	-	hypothetical protein
1518	 72.80	0	1717716..1718465	+	249	184201164	-	KRH_15180	-	hypothetical protein
1519	 78.57	+1	1718679..1718846	-	55	184201165	-	KRH_15190	-	hypothetical protein
1520	 71.87	0	1718919..1720418	-	499	184201166	engA	KRH_15200	-	GTP-binding protein EngA
1521	 71.08	0	1720466..1721212	-	248	184201167	cmk	KRH_15210	-	cytidylate kinase
1522	 73.73	0	1721212..1722330	-	372	184201168	tyrA	KRH_15220	-	prephenate dehydrogenase
1523	 71.18	0	1722327..1723433	-	368	184201169	-	KRH_15230	-	pseudouridine synthase
1524	 71.43	0	1723441..1724133	-	230	184201170	scpB	KRH_15240	-	putative chromosome segregation and condensation protein ScpB
1525	 71.07	0	1724284..1725168	-	294	184201171	scpA	KRH_15250	-	putative chromosome segregation and condensation protein ScpA
1526	 68.46	0	1725197..1726090	-	297	184201172	-	KRH_15260	-	putative Soj/ParA-related protein
1527	 69.53	0	1726265..1727764	-	499	184201173	dctA	KRH_15270	-	C4-dicarboxylate transport protein
1528	 70.21	0	1727934..1729853	-	639	184201174	prpE	KRH_15280	-	propionate--CoA ligase
1529	 74.85	+1	1730035..1730694	+	219	184201175	-	KRH_15290	-	GntR family transcriptional regulator
1530	 69.73	0	1730753..1732285	+	510	184201176	prpD	KRH_15300	-	2-methylcitrate dehydratase
1531	 69.08	0	1732288..1733199	+	303	184201177	prpB	KRH_15310	-	2-methylisocitrate lyase
1532	 68.16	0	1733282..1734421	+	379	184201178	prpC	KRH_15320	-	2-methylcitrate synthase
1533	 70.74	0	1734480..1735460	-	326	184201179	-	KRH_15330	-	putative D-alanyl-D-alanine carboxypeptidase
1534	 73.01	0	1735689..1736603	-	304	184201180	xerD	KRH_15340	-	tyrosine recombinase XerD
1535	 69.56	0	1736732..1737388	-	218	184201181	nudF	KRH_15350	-	ADP-ribose pyrophosphatase
1536	 69.38	0	1737392..1739089	-	565	184201182	pyrG	KRH_15360	-	CTP synthase
1537	 73.61	0	1739140..1740852	-	570	184201183	recN	KRH_15370	-	DNA repair protein RecN
1538	 72.02	0	1740849..1741931	-	360	184201184	ppnK	KRH_15380	-	inorganic polyphosphate/ATP-NAD kinase
1539	 73.70	0	1741987..1742754	-	255	184201185	-	KRH_15390	-	hypothetical protein
1540	 76.65	+1	1742751..1743281	-	176	184201186	-	KRH_15400	-	hypothetical protein
1541	 74.79	+1	1743271..1744317	-	348	184201187	-	KRH_15410	-	putative phosphatase
1542	 75.55	+1	1744307..1746523	-	738	184201188	-	KRH_15420	-	hypothetical protein
1543	 66.67	-1	1746722..1747933	+	403	184201189	-	KRH_15430	-	DAACS family transporter
1544	 68.12	0	1754423..1755733	-	436	184201190	tyrS	KRH_15440	-	tyrosyl-tRNA synthetase
1545	 73.13	0	1755747..1758050	-	767	184201191	-	KRH_15450	-	hypothetical protein
1546	 73.11	0	1758121..1758648	-	175	184201192	apt	KRH_15460	-	adenine phosphoribosyltransferase
1547	 75.81	+1	1758684..1759394	-	236	184201193	-	KRH_15470	-	putative 3-methyladenine DNA glycosylase
1548	 73.72	0	1759391..1760836	-	481	184201194	argH	KRH_15480	-	argininosuccinate lyase
1549	 68.16	0	1761045..1762250	-	401	184201195	argG	KRH_15490	-	argininosuccinate synthase
1550	 69.11	0	1762337..1763851	-	504	184201196	fadD	KRH_15500	-	long-chain fatty-acid-CoA ligase
1551	 71.30	0	1764060..1764491	+	143	184201197	-	KRH_15510	-	hypothetical protein
1552	 73.33	0	1764718..1765212	-	164	184201198	argR	KRH_15520	-	arginine repressor ArgR
1553	 73.05	0	1765209..1766180	-	323	184201199	argF	KRH_15530	-	ornithine carbamoyltransferase
1554	 75.24	+1	1766308..1767543	-	411	184201200	argD	KRH_15540	-	acetylornithine/succinyldiaminopimelate aminotransferase
1555	 70.45	0	1767540..1768490	-	316	184201201	argB	KRH_15550	-	acetylglutamate kinase
1556	 73.35	0	1768501..1769712	-	403	184201202	argJ	KRH_15560	-	glutamate N-acetyltransferase/amino-acid acetyltransferase
1557	 74.76	0	1769863..1770924	-	353	184201203	argC	KRH_15570	-	N-acetyl-gamma-glutamyl-phosphate reductase
1558	 74.85	+1	1771134..1772111	+	325	184201204	qor	KRH_15580	-	NADPH--quinone reductase
1559	 70.83	0	1772301..1772900	-	199	184201205	-	KRH_15590	-	hypothetical protein
1560	 73.91	0	1772922..1775474	-	850	184201206	pheT	KRH_15600	-	phenylalanyl-tRNA synthetase beta chain
1561	 70.73	0	1775478..1776536	-	352	184201207	pheS	KRH_15610	-	phenylalanyl-tRNA synthetase alpha chain
1562	 72.29	0	1776923..1778452	-	509	184201208	-	KRH_15620	-	drug resistance efflux protein
1563	 75.65	+1	1778449..1779060	-	203	184201209	-	KRH_15630	-	hypothetical protein
1564	 74.97	+1	1779057..1780007	-	316	184201210	-	KRH_15640	-	putative RNA methyltransferase
1565	 66.67	-1	1780016..1780402	-	128	184201211	rplT	KRH_15650	-	50S ribosomal protein L20
1566	 66.16	-1	1780498..1780695	-	65	184201212	rpmI	KRH_15660	-	50S ribosomal protein L35
1567	 69.95	0	1780815..1781759	-	314	184201213	infC	KRH_15670	-	translation initiation factor IF-3
1568	 73.11	0	1782093..1782542	+	149	184201214	-	KRH_15680	-	hypothetical protein
1569	 75.64	+1	1782821..1783678	-	285	184201215	-	KRH_15690	-	hypothetical protein
1570	 73.07	0	1783671..1784420	-	249	184201216	hisA	KRH_15700	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase
1571	 69.75	0	1784602..1784763	-	53	184201217	-	KRH_15710	-	hypothetical protein
1572	 74.15	0	1784760..1785494	-	244	184201218	hisH	KRH_15720	-	imidazole glycerol phosphate synthase subunit HisH
1573	 69.91	0	1785550..1786197	-	215	184201219	hisB	KRH_15730	-	imidazoleglycerol-phosphate dehydratase
1574	 71.20	0	1786448..1787551	-	367	184201220	hisC	KRH_15740	-	histidinol-phosphate aminotransferase
1575	 73.12	0	1787574..1787945	-	123	184201221	-	KRH_15750	-	hypothetical protein
70.94	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.