IslandPathversion 1.0

IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 70.94 STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1210	 66.77	-1	1348870..1349877	+	335	184200856	gap	KRH_12100	-	glyceraldehyde-3-phosphate dehydrogenase
1211	 70.64	0	1349955..1351187	+	410	184200857	pgk	KRH_12110	-	phosphoglycerate kinase
1212	 69.98	0	1351224..1352039	+	271	184200858	tpiA	KRH_12120	-	triosephosphate isomerase
1213	 62.59	-2	1352204..1352497	+	97	184200859	secG	KRH_12130	-	protein-export membrane protein SecG
1214	 74.40	0	1352664..1353452	-	262	184200860	pgl	KRH_12140	-	6-phosphogluconolactonase
1215	 72.75	0	1353449..1354483	-	344	184200861	opcA	KRH_12150	-	putative OxPP cycle protein OpcA
1216	 68.75	0	1354492..1356024	-	510	184200862	zwf	KRH_12160	-	glucose-6-phosphate 1-dehydrogenase
1217	 72.40	0	1356067..1357671	-	534	184200863	pgi	KRH_12170	-	putative glucose-6-phosphate isomerase
1218	 69.83	0	1357810..1358916	-	368	184200864	tal	KRH_12180	-	transaldolase
1219	 70.17	0	1359004..1361115	-	703	184200865	tkt	KRH_12190	-	transketolase
1220	 69.07	0	1361525..1362439	+	304	184200866	-	KRH_12200	-	putative protoheme IX farnesyltransferase
1221	 71.79	0	1362522..1363439	+	305	184200867	-	KRH_12210	-	putative dihydrodipicolinate synthase
1222	 70.94	0	1363489..1364517	-	342	184200868	-	KRH_12220	-	hypothetical protein
1223	 74.59	0	1364612..1365406	-	264	184200869	-	KRH_12230	-	putative ABC transporter permease protein
1224	 75.33	+1	1365403..1366395	-	330	184200870	-	KRH_12240	-	putative ABC transporter ATP-binding protein
1225	 71.90	0	1366611..1367375	+	254	184200871	-	KRH_12250	-	SufR family transcriptional regulator
1226	 65.51	-1	1367372..1368847	+	491	184200872	sufB	KRH_12260	-	putative iron-sulfur cluster assembly protein SufB
1227	 70.56	0	1368945..1370150	+	401	184200873	sufD	KRH_12270	-	putative iron-sulfur cluster assembly protein SufD
1228	 65.88	-1	1370239..1371003	+	254	184200874	sufC	KRH_12280	-	putative iron-sulfur cluster assembly protein SufC
1229	 67.78	0	1371037..1371396	+	119	184200875	-	KRH_12290	-	hypothetical protein
1230	 71.74	0	1371666..1372907	+	413	184200876	lldD	KRH_12300	-	putative L-lactate dehydrogenase
1231	 72.41	0	1372935..1373840	-	301	184200877	-	KRH_12310	-	hypothetical protein
1232	 76.88	+1	1373981..1374724	-	247	184200878	-	KRH_12320	-	putative ABC transporter permease protein
1233	 74.02	0	1374721..1375482	-	253	184200879	-	KRH_12330	-	putative ABC transporter ATP-binding protein
1234	 73.62	0	1375483..1376115	-	210	184200880	-	KRH_12340	-	BioY family protein
1235	 69.17	0	1376513..1378111	+	532	184200881	-	KRH_12350	-	putative ABC transporter ATP-binding protein
1236	 73.87	0	1378172..1379281	-	369	184200882	adh	KRH_12360	-	alcohol dehydrogenase
1237	 71.47	0	1379337..1380314	-	325	184200883	-	KRH_12370	-	hypothetical protein
1238	 77.40	+1	1380311..1380757	-	148	184200884	-	KRH_12380	-	hypothetical protein
1239	 70.39	0	1380798..1381280	-	160	184200885	-	KRH_12390	-	hypothetical protein
1240	 69.42	0	1381435..1382160	+	241	184200886	fabG	KRH_12400	-	3-oxoacyl-[acyl-carrier-protein] reductase
1241	 69.48	0	1382175..1382957	+	260	184200887	-	KRH_12410	-	putative oxidoreductase
1242	 69.96	0	1383306..1384034	-	242	184200888	-	KRH_12420	-	hypothetical protein
1243	 73.01	0	1384495..1386684	+	729	184200889	-	KRH_12430	-	hypothetical protein
1244	 73.81	0	1386799..1387764	+	321	184200890	serB	KRH_12440	-	phosphoserine phosphatase
1245	 71.52	0	1387843..1388625	+	260	184200891	-	KRH_12450	-	putative ABC transporter ATP-binding protein
1246	 70.25	0	1388635..1389555	+	306	184200892	-	KRH_12460	-	hypothetical protein
1247	 71.98	0	1389707..1390534	+	275	184200893	-	KRH_12470	-	RNA methyltransferase
1248	 71.16	0	1390725..1392638	-	637	184200894	-	KRH_12480	-	subtilisin family peptidase
1249	 62.02	-2	1393046..1393303	-	85	184200895	rpmE	KRH_12490	-	50S ribosomal protein L31
1250	 70.89	0	1393565..1394629	+	354	184200896	-	KRH_12500	-	putative lipoate-protein ligase
1251	 68.44	0	1394668..1395792	+	374	184200897	-	KRH_12510	-	LytR family regulatory protein
1252	 73.52	0	1395964..1397277	+	437	184200898	-	KRH_12520	-	hypothetical protein
1253	 77.78	+1	1397274..1399064	+	596	184200899	-	KRH_12530	-	putative glycosyltransferase
1254	 74.58	0	1398943..1399119	+	58	184200900	-	KRH_12540	-	hypothetical protein
1255	 68.13	0	1399227..1400048	+	273	184200901	-	KRH_12550	-	putative ABC transporter permease protein
1256	 71.28	0	1400197..1401042	+	281	184200902	-	KRH_12560	-	putative ABC transporter ATP-binding protein
1257	 71.67	0	1401039..1402955	+	638	184200903	-	KRH_12570	-	hypothetical protein
1258	 67.15	0	1403038..1404285	+	415	184200904	-	KRH_12580	-	UDP-N-acetyl-D-mannosamine dehydrogenase
1259	 58.25	-2	1404645..1404929	+	94	184200905	-	KRH_12590	-	hypothetical protein
1260	 60.29	-2	1404926..1407592	+	888	184200906	-	KRH_12600	-	putative glycosyltransferase
1261	 61.80	-2	1407667..1409043	-	458	184200907	-	KRH_12610	-	hypothetical protein
1262	 61.03	-2	1409126..1411129	-	667	184200908	-	KRH_12620	-	hypothetical protein
1263	 61.01	-2	1411549..1412979	-	476	184200909	-	KRH_12630	-	hypothetical protein
1264	 62.62	-2	1412972..1415443	-	823	184200910	-	KRH_12640	-	hypothetical protein
1265	 61.19	-2	1415538..1417544	-	668	184200911	-	KRH_12650	-	hypothetical protein
1266	 72.44	0	1417628..1418977	-	449	184200912	rkpK	KRH_12660	-	UDP-glucose 6-dehydrogenase
1267	 68.13	0	1419007..1420164	-	385	184200913	-	KRH_12670	-	UDP-N-acetylglucosamine 2-epimerase
1268	 69.66	0	1420494..1421261	+	255	184200914	-	KRH_12680	-	hypothetical protein
1269	 68.79	0	1421327..1423024	-	565	184200915	-	KRH_12690	-	hypothetical protein
1270	 71.10	0	1423042..1424283	-	413	184200916	-	KRH_12700	-	hypothetical protein
1271	 71.67	0	1424398..1427016	-	872	184200917	pepN	KRH_12710	-	aminopeptidase N
1272	 67.07	-1	1427317..1428561	-	414	184200918	glgC	KRH_12720	-	glucose-1-phosphate adenylyltransferase
1273	 70.44	0	1428902..1430095	+	397	184200919	-	KRH_12730	-	putative glycosyltransferase
1274	 71.10	0	1430276..1430929	-	217	184200920	-	KRH_12740	-	TetR family transcriptional regulator
1275	 69.59	0	1431012..1432139	+	375	184200921	-	KRH_12750	-	hypothetical protein
1276	 70.19	0	1432787..1433155	+	122	184200922	-	KRH_12760	-	hypothetical protein
1277	 71.96	0	1433361..1433738	+	125	184200923	-	KRH_12770	-	hypothetical protein
1278	 65.32	-1	1433830..1434126	+	98	184200924	-	KRH_12780	-	hypothetical protein
1279	 71.78	0	1434415..1435470	-	351	184200925	trpD	KRH_12790	-	anthranilate phosphoribosyltransferase
1280	 62.60	-2	1435649..1436287	+	212	184200926	ctaE	KRH_12800	-	cytochrome c oxidase subunit III
1281	 66.54	-1	1436346..1437137	+	263	184200927	qcrC	KRH_12810	-	menaquinol-cytochrome c reductase cytochrome c subunit
1282	 65.94	-1	1437196..1438302	+	368	184200928	qcrA	KRH_12820	-	menaquinol-cytochrome c reductase iron-sulfur subunit
1283	 66.25	-1	1438302..1439969	+	555	184200929	qcrB	KRH_12830	-	menaquinol-cytochrome c reductase cytochrome b subunit
1284	 66.42	-1	1441320..1441724	-	134	184200930	-	KRH_12840	-	hypothetical protein
1285	 63.47	-1	1441721..1443442	-	573	184200931	ctaD	KRH_12850	-	cytochrome c oxidase subunit I
1286	 63.20	-2	1443453..1444259	-	268	184200932	ctaC	KRH_12860	-	cytochrome c oxidase subunit II precursor
1287	 67.48	0	1444588..1444956	-	122	184200933	iscA	KRH_12870	-	putative iron-sulfur cluster assembly protein IscA
1288	 73.60	0	1445043..1446455	-	470	184200934	-	KRH_12880	-	peptidase M20A family protein
1289	 71.14	0	1446536..1447138	+	200	184200935	-	KRH_12890	-	hypothetical protein
1290	 72.62	0	1447312..1448403	-	363	184200936	pyrD	KRH_12900	-	dihydroorotate dehydrogenase
1291	 71.09	0	1448581..1449372	-	263	184200937	uppS	KRH_12910	-	undecaprenyl pyrophosphate synthase
1292	 73.65	0	1449454..1450212	-	252	184200938	recO	KRH_12920	-	DNA repair protein RecO
1293	 68.21	0	1450506..1452260	-	584	184200939	leuA	KRH_12930	-	2-isopropylmalate synthase
1294	 72.91	0	1452431..1454032	-	533	184200940	-	KRH_12940	-	LytR family regulatory protein
1295	 71.73	0	1454102..1455148	-	348	184200941	era	KRH_12950	-	GTP-binding protein Era
1296	 72.78	0	1455201..1455707	-	168	184200942	-	KRH_12960	-	hypothetical protein
1297	 70.99	0	1455704..1456813	-	369	184200943	-	KRH_12970	-	PhoH-like protein
1298	 72.77	0	1456856..1458052	+	398	184200944	-	KRH_12980	-	hypothetical protein
1299	 76.77	+1	1458351..1459112	-	253	184200945	-	KRH_12990	-	hypothetical protein
1300	 70.87	0	1459109..1460251	-	380	184200946	dnaJ	KRH_13000	-	chaperone protein DnaJ
1301	 72.78	0	1460318..1461331	-	337	184200947	hrcA	KRH_13010	-	heat-inducible transcription repressor HrcA
1302	 73.49	0	1461506..1462384	+	292	184200948	-	KRH_13020	-	hypothetical protein
1303	 70.67	0	1462554..1462928	+	124	184200949	-	KRH_13030	-	hypothetical protein
1304	 73.25	0	1463016..1464260	-	414	184200950	hemN	KRH_13040	-	putative oxygen-independent coproporphyrinogen III oxidase
1305	 66.88	-1	1464260..1466116	-	618	184200951	lepA	KRH_13050	-	GTP-binding protein LepA
1306	 75.04	+1	1466201..1466797	+	198	184200952	-	KRH_13060	-	hypothetical protein
1307	 61.30	-2	1467094..1467354	+	86	184200953	rpsT	KRH_13070	-	30S ribosomal protein S20
1308	 69.89	0	1467371..1467556	-	61	184200954	-	KRH_13080	-	hypothetical protein
1309	 72.19	0	1467614..1468627	-	337	184200955	holA	KRH_13090	-	DNA polymerase III delta subunit
70.94	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.