IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1060	 71.52	0	1161293..1161787	+	164	184200706	-	KRH_10600	-	hypothetical protein
1061	 75.52	+1	1161784..1162653	+	289	184200707	-	KRH_10610	-	hypothetical protein
1062	 67.13	0	1162846..1163274	+	142	184200708	rpsP	KRH_10620	-	30S ribosomal protein S16
1063	 71.08	0	1163271..1163519	+	82	184200709	-	KRH_10630	-	hypothetical protein
1064	 72.92	0	1163647..1164222	+	191	184200710	rimM	KRH_10640	-	putative 16S rRNA processing protein RimM
1065	 74.00	0	1164225..1165220	+	331	184200711	trmD	KRH_10650	-	tRNA (guanine-N(1)-)-methyltransferase
1066	 64.74	-1	1165396..1165758	+	120	184200712	rplS	KRH_10660	-	50S ribosomal protein L19
1067	 74.06	0	1165770..1166459	+	229	184200713	-	KRH_10670	-	signal peptidase I
1068	 70.53	0	1166535..1167311	+	258	184200714	-	KRH_10680	-	signal peptidase I
1069	 74.91	+1	1167233..1168033	+	266	184200715	rnhB	KRH_10690	-	ribonuclease HII
1070	 74.25	0	1168361..1168795	+	144	184200716	-	KRH_10700	-	hypothetical protein
1071	 75.70	+1	1169007..1170335	+	442	184200717	-	KRH_10710	-	hypothetical protein
1072	 73.14	0	1170686..1172245	+	519	184200718	-	KRH_10720	-	putative magnesium chelatase
1073	 74.04	0	1172242..1173570	+	442	184200719	-	KRH_10730	-	putative DNA processing protein
1074	 74.05	0	1173542..1174678	+	378	184200720	xerC	KRH_10740	-	tyrosine recombinase XerC
1075	 70.83	0	1174885..1175388	+	167	184200721	-	KRH_10750	-	hypothetical protein
1076	 70.91	0	1175802..1177073	-	423	184200722	fabF	KRH_10760	-	3-oxoacyl-[acyl-carrier-protein] synthase
1077	 58.94	-2	1177184..1177429	-	81	184200723	acpP	KRH_10770	-	acyl carrier protein
1078	 70.22	0	1177579..1178646	-	355	184200724	fabH	KRH_10780	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1079	 73.25	0	1178709..1179620	-	303	184200725	fabD	KRH_10790	-	malonyl CoA-acyl carrier protein transacylase
1080	 73.14	0	1179712..1180947	-	411	184200726	-	KRH_10800	-	transcription regulator CcdaR
1081	 68.09	0	1181052..1183790	-	912	184200727	aceE	KRH_10810	-	pyruvate dehydrogenase E1 component
1082	 68.82	0	1184153..1184569	+	138	184200728	-	KRH_10820	-	hypothetical protein
1083	 68.61	0	1184608..1185069	+	153	184200729	-	KRH_10830	-	putative peroxiredoxin
1084	 72.30	0	1185071..1185976	+	301	184200730	-	KRH_10840	-	NAD-dependent deacetylase
1085	 69.42	0	1186305..1187138	-	277	184200731	ppgK	KRH_10850	-	polyphosphate glucokinase
1086	 69.34	0	1187236..1188132	-	298	184200732	map	KRH_10860	-	methionine aminopeptidase
1087	 70.79	0	1188226..1188492	+	88	184200733	-	KRH_10870	-	hypothetical protein
1088	 73.45	0	1188643..1189482	-	279	184200734	panB	KRH_10880	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1089	 67.49	0	1189672..1191015	+	447	184200735	glnA	KRH_10890	-	glutamine synthetase I
1090	 72.85	0	1191023..1194094	+	1023	184200736	glnE	KRH_10900	-	glutamine-synthetase adenylyltransferase
1091	 71.56	0	1194234..1194866	-	210	184200737	-	KRH_10910	-	hypothetical protein
1092	 72.48	0	1195347..1196051	+	234	184200738	ssb	KRH_10920	-	single-stranded DNA-binding protein
1093	 66.19	-1	1196274..1197956	+	560	184200739	-	KRH_10930	-	putative ABC transporter ATP-binding protein
1094	 76.63	+1	1198438..1201287	-	949	184200740	-	KRH_10940	-	putative penicillin amidase
1095	 73.03	0	1201149..1203080	-	643	184200741	-	KRH_10950	-	putative siderophore biosynthesis protein
1096	 74.61	0	1203077..1205341	-	754	184200742	-	KRH_10960	-	siderophore biosynthesis protein
1097	 73.17	0	1205338..1206843	-	501	184200743	ddc	KRH_10970	-	putative L-2,4-diaminobutyrate decarboxylase
1098	 72.76	0	1206973..1207743	+	256	184200744	-	KRH_10980	-	putative siderophore-interacting protein
1099	 74.35	0	1207740..1209002	+	420	184200745	-	KRH_10990	-	putative MFS transporter
1100	 70.26	0	1209265..1210155	-	296	184200746	-	KRH_11000	-	putative acyl-CoA thioesterase
1101	 65.38	-1	1210199..1210666	+	155	184200747	-	KRH_11010	-	hypothetical protein
1102	 76.93	+1	1210663..1211373	+	236	184200748	-	KRH_11020	-	hypothetical protein
1103	 71.78	0	1211463..1211873	-	136	184200749	glbO	KRH_11030	-	2-on-2 hemoglobin
1104	 71.28	0	1212161..1214740	-	859	184200750	pepN	KRH_11040	-	aminopeptidase N
1105	 70.18	0	1214998..1215510	+	170	184200751	rpiB	KRH_11050	-	ribose 5-phosphate isomerase B
1106	 74.92	+1	1215526..1216446	+	306	184200752	-	KRH_11060	-	putative DNA glycosylase
1107	 67.41	0	1217162..1218508	+	448	184200753	tig	KRH_11070	-	trigger factor
1108	 66.97	-1	1218736..1219389	+	217	184200754	clpP	KRH_11080	-	ATP-dependent Clp protease proteolytic subunit
1109	 65.61	-1	1219439..1220101	+	220	184200755	clpP	KRH_11090	-	ATP-dependent Clp protease proteolytic subunit
1110	 65.35	-1	1220251..1221546	+	431	184200756	clpX	KRH_11100	-	ATP-dependent Clp protease ATP-binding subunit ClpX
1111	 67.33	0	1221577..1222179	+	200	184200757	-	KRH_11110	-	DSBA oxidoreductase family protein
1112	 73.93	0	1222353..1223384	-	343	184200758	-	KRH_11120	-	hypothetical protein
1113	 66.76	-1	1223484..1224614	-	376	184200759	-	KRH_11130	-	hypothetical protein
1114	 70.11	0	1224667..1227252	-	861	184200760	valS	KRH_11140	-	valyl-tRNA synthetase
1115	 73.78	0	1227662..1228462	+	266	184200761	-	KRH_11150	-	putative oxidoreductase
1116	 70.81	0	1228583..1229644	+	353	184200762	-	KRH_11160	-	iron compound ABC transporter iron compound-binding protein
1117	 75.43	+1	1229650..1230744	+	364	184200763	-	KRH_11170	-	iron compound ABC transporter permease protein
1118	 73.24	0	1230741..1231790	+	349	184200764	-	KRH_11180	-	iron compound ABC transporter permease protein
1119	 74.44	0	1231895..1232833	+	312	184200765	-	KRH_11190	-	iron compound ABC transporter ATP-binding protein
1120	 74.59	0	1232830..1233864	+	344	184200766	-	KRH_11200	-	putative siderophore-interacting protein
1121	 76.03	+1	1233973..1235349	+	458	184200767	cysG	KRH_11210	-	siroheme synthase CysG
1122	 75.41	+1	1235399..1235581	+	60	184200768	-	KRH_11220	-	hypothetical protein
1123	 70.35	0	1235722..1239033	+	1103	184200769	ileS	KRH_11230	-	isoleucyl-tRNA synthetase
1124	 71.99	0	1239030..1240400	+	456	184200770	folC	KRH_11240	-	folylpolyglutamate synthase
1125	 70.50	0	1240446..1240889	+	147	184200771	-	KRH_11250	-	hypothetical protein
1126	 70.53	0	1241005..1241418	+	137	184200772	ndk	KRH_11260	-	nucleoside diphosphate kinase
1127	 71.97	0	1241495..1242079	-	194	184200773	-	KRH_11270	-	hypothetical protein
1128	 74.03	0	1242604..1246041	+	1145	184200774	-	KRH_11280	-	putative ribonuclease
1129	 75.11	+1	1246214..1247764	+	516	184200775	thiD	KRH_11290	-	phosphomethylpyrimidine kinase
1130	 62.50	-2	1248011..1248322	+	103	184200776	rplU	KRH_11300	-	50S ribosomal protein L21
1131	 67.84	0	1248364..1248618	+	84	184200777	rpmA	KRH_11310	-	50S ribosomal protein L27
1132	 71.93	0	1248769..1250364	+	531	184200778	obg	KRH_11320	-	GTP-binding protein Obg
1133	 70.86	0	1250409..1251623	+	404	184200779	proB	KRH_11330	-	glutamate 5-kinase
1134	 71.71	0	1251719..1253026	+	435	184200780	proA	KRH_11340	-	gamma-glutamyl phosphate reductase
1135	 70.93	0	1253108..1253365	+	85	184200781	-	KRH_11350	-	hypothetical protein
1136	 72.33	0	1253383..1254141	+	252	184200782	nadD	KRH_11360	-	nicotinate-nucleotide adenylyltransferase
1137	 76.76	+1	1254138..1255019	+	293	184200783	-	KRH_11370	-	hypothetical protein
1138	 72.38	0	1255049..1255468	+	139	184200784	-	KRH_11380	-	hypothetical protein
1139	 75.70	+1	1255766..1256440	-	224	184200785	-	KRH_11390	-	hypothetical protein
1140	 73.77	0	1256573..1256755	+	60	184200786	-	KRH_11400	-	hypothetical protein
1141	 77.00	+1	1256801..1257013	+	70	184200787	-	KRH_11410	-	hypothetical protein
1142	 75.34	+1	1257125..1258012	-	295	184200788	-	KRH_11420	-	hypothetical protein
1143	 81.11	+2	1258137..1258316	+	59	184200789	-	KRH_11430	-	hypothetical protein
1144	 74.79	+1	1258313..1259272	+	319	184200790	-	KRH_11440	-	hypothetical protein
1145	 73.27	0	1259712..1263860	+	1382	184200791	-	KRH_11450	-	putative non-ribosomal peptide synthetase
1146	 72.13	0	1263947..1265281	+	444	184200792	-	KRH_11460	-	hypothetical protein
1147	 77.35	+1	1265457..1266233	-	258	184200793	-	KRH_11470	-	putative phosphopantetheinyl transferase
1148	 78.26	+1	1266230..1266988	-	252	184200794	-	KRH_11480	-	thioesterase
1149	 75.60	+1	1267860..1268363	+	167	184200795	-	KRH_11490	-	putative aminoacyl-tRNA deacylase
1150	 71.66	0	1268509..1269390	+	293	184200796	-	KRH_11500	-	hypothetical protein
1151	 70.49	0	1269594..1270745	+	383	184200797	-	KRH_11510	-	hypothetical protein
1152	 72.45	0	1270749..1272044	+	431	184200798	-	KRH_11520	-	Tat-translocated enzyme family protein
1153	 74.26	0	1272280..1273056	+	258	184200799	-	KRH_11530	-	MFS transporter
1154	 74.03	0	1273071..1273613	+	180	184200800	-	KRH_11540	-	MFS transporter
1155	 70.11	0	1274150..1274614	+	154	184200801	-	KRH_11550	-	hypothetical protein
1156	 74.41	0	1274700..1278407	+	1235	184200802	dnaE2	KRH_11560	-	error-prone DNA polymerase
1157	 70.59	0	1278483..1279553	+	356	184200803	-	KRH_11570	-	hypothetical protein
1158	 64.14	-1	1279915..1280151	+	78	184200804	nrdH	KRH_11580	-	NrdH-redoxin
1159	 64.71	-1	1280607..1281014	+	135	184200805	nrdI	KRH_11590	-	NrdI protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.