IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1013	 71.31	0	1101855..1102952	-	365	184200659	-	KRH_10130	-	mycothiol-dependent formaldehyde dehydrogenase
1014	 67.91	0	1103381..1104583	-	400	184200660	-	KRH_10140	-	hypothetical protein
1015	 68.68	0	1104674..1105120	-	148	184200661	-	KRH_10150	-	MarR family transcriptional regulator
1016	 68.22	0	1105323..1106807	-	494	184200662	mqo	KRH_10160	-	putative malate--quinone oxidoreductase
1017	 72.51	0	1106918..1108525	-	535	184200663	-	KRH_10170	-	putative ABC transporter substrate-binding protein
1018	 72.36	0	1108785..1109258	-	157	184200664	bcp	KRH_10180	-	hydroperoxide peroxidase
1019	 71.40	0	1109500..1110048	+	182	184200665	-	KRH_10190	-	MarR family transcriptional regulator
1020	 73.25	0	1110557..1111528	+	323	184200666	-	KRH_10200	-	putative dehydrogenase
1021	 70.39	0	1111797..1113674	+	625	184200667	ilvB	KRH_10210	-	acetolactate synthase large subunit
1022	 68.63	0	1113678..1114187	+	169	184200668	ilvN	KRH_10220	-	acetolactate synthase small subunit
1023	 67.54	0	1114303..1115328	+	341	184200669	ilvC	KRH_10230	-	ketol-acid reductoisomerase
1024	 69.24	0	1115557..1117110	+	517	184200670	metG	KRH_10240	-	methionyl-tRNA synthetase
1025	 71.11	0	1117457..1118536	+	359	184200671	leuB	KRH_10250	-	3-isopropylmalate dehydrogenase
1026	 69.95	0	1118643..1119740	+	365	184200672	ilvE	KRH_10260	-	branched-chain amino acid aminotransferase
1027	 71.15	0	1119830..1120609	+	259	184200673	-	KRH_10270	-	fumarylacetoacetate hydrolase family protein
1028	 69.82	0	1120656..1122176	+	506	184200674	gltX	KRH_10280	-	glutamyl-tRNA synthetase
1029	 75.04	+1	1122883..1124637	+	584	184200675	-	KRH_10290	-	hypothetical protein
1030	 76.46	+1	1124634..1126298	+	554	184200676	-	KRH_10300	-	hypothetical protein
1031	 75.65	+1	1126326..1127138	-	270	184200677	-	KRH_10310	-	IclR family transcriptional regulator
1032	 71.61	0	1127290..1128726	+	478	184200678	leuC	KRH_10320	-	3-isopropylmalate dehydratase large subunit
1033	 68.00	0	1128850..1129449	+	199	184200679	leuD	KRH_10330	-	3-isopropylmalate dehydratase small subunit
1034	 69.47	0	1129547..1130866	+	439	184200680	murA	KRH_10340	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1035	 73.98	0	1130982..1131788	+	268	184200681	-	KRH_10350	-	putative acyltransferase
1036	 73.76	0	1131785..1132855	+	356	184200682	gpsA	KRH_10360	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1037	 71.09	0	1132852..1134003	+	383	184200683	ddl	KRH_10370	-	D-alanine--D-alanine ligase
1038	 74.18	0	1134095..1134613	-	172	184200684	-	KRH_10380	-	hypothetical protein
1039	 75.92	+1	1134800..1135912	+	370	184200685	thiL	KRH_10390	-	thiamine-monophosphate kinase
1040	 73.63	0	1135902..1136849	+	315	184200686	-	KRH_10400	-	hypothetical protein
1041	 73.83	0	1136846..1139107	+	753	184200687	recG	KRH_10410	-	ATP-dependent DNA helicase RecG
1042	 74.72	0	1139104..1139736	+	210	184200688	-	KRH_10420	-	hypothetical protein
1043	 74.39	0	1139933..1141111	-	392	184200689	-	KRH_10430	-	aminotransferase
1044	 69.85	0	1141287..1141757	+	156	184200690	coaD	KRH_10440	-	phosphopantetheine adenylyltransferase
1045	 64.97	-1	1141931..1142521	+	196	184200691	-	KRH_10450	-	hypothetical protein
1046	 62.75	-2	1142524..1142727	+	67	184200692	rpmF	KRH_10460	-	50S ribosomal protein L32
1047	 71.63	0	1142729..1143433	+	234	184200693	rnc	KRH_10470	-	ribonuclease III
1048	 73.44	0	1143441..1144370	+	309	184200694	mutM	KRH_10480	-	formamidopyrimidine-DNA glycosylase/AP lyase
1049	 69.62	0	1144530..1145240	+	236	184200695	-	KRH_10490	-	hypothetical protein
1050	 73.48	0	1145342..1146559	-	405	184200696	-	KRH_10500	-	putative steroid dehydrogenase
1051	 74.54	0	1146736..1149465	-	909	184200697	-	KRH_10510	-	putative fatty-acid--CoA ligase
1052	 70.18	0	1149492..1150517	-	341	184200698	-	KRH_10520	-	putative 3-oxoacyl-[acyl-carrier-protein] synthase III
1053	 75.03	+1	1150779..1154423	+	1214	184200699	smc	KRH_10530	-	chromosome partition protein SMC
1054	 70.32	0	1154461..1155063	-	200	184200700	-	KRH_10540	-	hypothetical protein
1055	 74.42	0	1155140..1156468	-	442	184200701	-	KRH_10550	-	MFS transporter
1056	 70.24	0	1156500..1157618	+	372	184200702	ftsY	KRH_10560	-	cell division protein FtsY
1057	 70.74	0	1157851..1159200	+	449	184200703	amtB	KRH_10570	-	ammonium transporter
1058	 69.62	0	1159197..1159535	+	112	184200704	-	KRH_10580	-	nitrogen regulatory protein P-II
1059	 69.28	0	1159721..1161286	+	521	184200705	ffh	KRH_10590	-	signal recognition particle protein
1060	 71.52	0	1161293..1161787	+	164	184200706	-	KRH_10600	-	hypothetical protein
1061	 75.52	+1	1161784..1162653	+	289	184200707	-	KRH_10610	-	hypothetical protein
1062	 67.13	0	1162846..1163274	+	142	184200708	rpsP	KRH_10620	-	30S ribosomal protein S16
1063	 71.08	0	1163271..1163519	+	82	184200709	-	KRH_10630	-	hypothetical protein
1064	 72.92	0	1163647..1164222	+	191	184200710	rimM	KRH_10640	-	putative 16S rRNA processing protein RimM
1065	 74.00	0	1164225..1165220	+	331	184200711	trmD	KRH_10650	-	tRNA (guanine-N(1)-)-methyltransferase
1066	 64.74	-1	1165396..1165758	+	120	184200712	rplS	KRH_10660	-	50S ribosomal protein L19
1067	 74.06	0	1165770..1166459	+	229	184200713	-	KRH_10670	-	signal peptidase I
1068	 70.53	0	1166535..1167311	+	258	184200714	-	KRH_10680	-	signal peptidase I
1069	 74.91	+1	1167233..1168033	+	266	184200715	rnhB	KRH_10690	-	ribonuclease HII
1070	 74.25	0	1168361..1168795	+	144	184200716	-	KRH_10700	-	hypothetical protein
1071	 75.70	+1	1169007..1170335	+	442	184200717	-	KRH_10710	-	hypothetical protein
1072	 73.14	0	1170686..1172245	+	519	184200718	-	KRH_10720	-	putative magnesium chelatase
1073	 74.04	0	1172242..1173570	+	442	184200719	-	KRH_10730	-	putative DNA processing protein
1074	 74.05	0	1173542..1174678	+	378	184200720	xerC	KRH_10740	-	tyrosine recombinase XerC
1075	 70.83	0	1174885..1175388	+	167	184200721	-	KRH_10750	-	hypothetical protein
1076	 70.91	0	1175802..1177073	-	423	184200722	fabF	KRH_10760	-	3-oxoacyl-[acyl-carrier-protein] synthase
1077	 58.94	-2	1177184..1177429	-	81	184200723	acpP	KRH_10770	-	acyl carrier protein
1078	 70.22	0	1177579..1178646	-	355	184200724	fabH	KRH_10780	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1079	 73.25	0	1178709..1179620	-	303	184200725	fabD	KRH_10790	-	malonyl CoA-acyl carrier protein transacylase
1080	 73.14	0	1179712..1180947	-	411	184200726	-	KRH_10800	-	transcription regulator CcdaR
1081	 68.09	0	1181052..1183790	-	912	184200727	aceE	KRH_10810	-	pyruvate dehydrogenase E1 component
1082	 68.82	0	1184153..1184569	+	138	184200728	-	KRH_10820	-	hypothetical protein
1083	 68.61	0	1184608..1185069	+	153	184200729	-	KRH_10830	-	putative peroxiredoxin
1084	 72.30	0	1185071..1185976	+	301	184200730	-	KRH_10840	-	NAD-dependent deacetylase
1085	 69.42	0	1186305..1187138	-	277	184200731	ppgK	KRH_10850	-	polyphosphate glucokinase
1086	 69.34	0	1187236..1188132	-	298	184200732	map	KRH_10860	-	methionine aminopeptidase
1087	 70.79	0	1188226..1188492	+	88	184200733	-	KRH_10870	-	hypothetical protein
1088	 73.45	0	1188643..1189482	-	279	184200734	panB	KRH_10880	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1089	 67.49	0	1189672..1191015	+	447	184200735	glnA	KRH_10890	-	glutamine synthetase I
1090	 72.85	0	1191023..1194094	+	1023	184200736	glnE	KRH_10900	-	glutamine-synthetase adenylyltransferase
1091	 71.56	0	1194234..1194866	-	210	184200737	-	KRH_10910	-	hypothetical protein
1092	 72.48	0	1195347..1196051	+	234	184200738	ssb	KRH_10920	-	single-stranded DNA-binding protein
1093	 66.19	-1	1196274..1197956	+	560	184200739	-	KRH_10930	-	putative ABC transporter ATP-binding protein
1094	 76.63	+1	1198438..1201287	-	949	184200740	-	KRH_10940	-	putative penicillin amidase
1095	 73.03	0	1201149..1203080	-	643	184200741	-	KRH_10950	-	putative siderophore biosynthesis protein
1096	 74.61	0	1203077..1205341	-	754	184200742	-	KRH_10960	-	siderophore biosynthesis protein
1097	 73.17	0	1205338..1206843	-	501	184200743	ddc	KRH_10970	-	putative L-2,4-diaminobutyrate decarboxylase
1098	 72.76	0	1206973..1207743	+	256	184200744	-	KRH_10980	-	putative siderophore-interacting protein
1099	 74.35	0	1207740..1209002	+	420	184200745	-	KRH_10990	-	putative MFS transporter
1100	 70.26	0	1209265..1210155	-	296	184200746	-	KRH_11000	-	putative acyl-CoA thioesterase
1101	 65.38	-1	1210199..1210666	+	155	184200747	-	KRH_11010	-	hypothetical protein
1102	 76.93	+1	1210663..1211373	+	236	184200748	-	KRH_11020	-	hypothetical protein
1103	 71.78	0	1211463..1211873	-	136	184200749	glbO	KRH_11030	-	2-on-2 hemoglobin
1104	 71.28	0	1212161..1214740	-	859	184200750	pepN	KRH_11040	-	aminopeptidase N
1105	 70.18	0	1214998..1215510	+	170	184200751	rpiB	KRH_11050	-	ribose 5-phosphate isomerase B
1106	 74.92	+1	1215526..1216446	+	306	184200752	-	KRH_11060	-	putative DNA glycosylase
1107	 67.41	0	1217162..1218508	+	448	184200753	tig	KRH_11070	-	trigger factor
1108	 66.97	-1	1218736..1219389	+	217	184200754	clpP	KRH_11080	-	ATP-dependent Clp protease proteolytic subunit
1109	 65.61	-1	1219439..1220101	+	220	184200755	clpP	KRH_11090	-	ATP-dependent Clp protease proteolytic subunit
1110	 65.35	-1	1220251..1221546	+	431	184200756	clpX	KRH_11100	-	ATP-dependent Clp protease ATP-binding subunit ClpX
1111	 67.33	0	1221577..1222179	+	200	184200757	-	KRH_11110	-	DSBA oxidoreductase family protein
1112	 73.93	0	1222353..1223384	-	343	184200758	-	KRH_11120	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.