IslandPath Analysis: Kocuria rhizophila DC2201



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.94   STD DEV: 3.83
Kocuria rhizophila DC2201, complete genome - 1..2697540
2357 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
983	 66.12	-1	1070189..1071100	+	303	184200629	atpG	KRH_09830	-	ATP synthase gamma chain
984	 66.46	-1	1071143..1072609	+	488	184200630	atpD	KRH_09840	-	ATP synthase subunit beta
985	 69.53	0	1072613..1072891	+	92	184200631	atpC	KRH_09850	-	ATP synthase epsilon chain
986	 72.43	0	1073037..1074320	+	427	184200632	murA	KRH_09860	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
987	 63.24	-2	1074468..1074671	-	67	184200633	-	KRH_09870	-	cold shock protein
988	 68.39	0	1075035..1075730	-	231	184200634	-	KRH_09880	-	hypothetical protein
989	 75.27	+1	1075775..1075960	+	61	184200635	-	KRH_09890	-	hypothetical protein
990	 70.64	0	1076060..1077241	-	393	184200636	-	KRH_09900	-	hypothetical protein
991	 75.17	+1	1077509..1078402	+	297	184200637	-	KRH_09910	-	hypothetical protein
992	 73.01	0	1078488..1079465	+	325	184200638	-	KRH_09920	-	putative ABC transporter ATP-binding protein
993	 73.05	0	1079663..1081291	+	542	184200639	-	KRH_09930	-	hypothetical protein
994	 68.41	0	1081324..1081668	+	114	184200640	-	KRH_09940	-	hypothetical protein
995	 71.88	0	1082040..1083881	+	613	184200641	-	KRH_09950	-	hypothetical protein
996	 72.49	0	1083982..1084599	-	205	184200642	pncA	KRH_09960	-	pyrazinamidase/nicotinamidase
997	 73.02	0	1084614..1085951	-	445	184200643	pncB	KRH_09970	-	putative nicotinate phosphoribosyltransferase
998	 69.23	0	1086017..1086367	+	116	184200644	clpS	KRH_09980	-	ATP-dependent Clp protease adaptor protein ClpS
999	 72.01	0	1086367..1086927	+	186	184200645	-	KRH_09990	-	hypothetical protein
1000	 70.47	0	1086996..1087889	+	297	184200646	murI	KRH_10000	-	glutamate racemase
1001	 72.02	0	1087915..1088754	+	279	184200647	-	KRH_10010	-	hypothetical protein
1002	 72.11	0	1088840..1089574	+	244	184200648	rph	KRH_10020	-	ribonuclease PH
1003	 76.84	+1	1089564..1090241	+	225	184200649	-	KRH_10030	-	nucleoside-triphosphatase
1004	 72.24	0	1090245..1091105	+	286	184200650	-	KRH_10040	-	hypothetical protein
1005	 72.85	0	1091147..1091728	+	193	184200651	dnaQ	KRH_10050	-	putative DNA polymerase III epsilon subunit
1006	 75.93	+1	1091810..1092856	-	348	184200652	-	KRH_10060	-	hypothetical protein
1007	 69.10	0	1092929..1093708	-	259	184200653	-	KRH_10070	-	hypothetical protein
1008	 64.22	-1	1094038..1094853	-	271	184200654	-	KRH_10080	-	hypothetical protein
1009	 72.39	0	1095112..1096335	+	407	184200655	sbcD	KRH_10090	-	nuclease SbcCD subunit D
1010	 74.20	0	1096332..1099571	+	1079	184200656	sbcC	KRH_10100	-	nuclease SbcCD subunit C
1011	 72.98	0	1099582..1100865	+	427	184200657	-	KRH_10110	-	hypothetical protein
1012	 70.18	0	1101175..1101858	-	227	184200658	-	KRH_10120	-	hypothetical protein
1013	 71.31	0	1101855..1102952	-	365	184200659	-	KRH_10130	-	mycothiol-dependent formaldehyde dehydrogenase
1014	 67.91	0	1103381..1104583	-	400	184200660	-	KRH_10140	-	hypothetical protein
1015	 68.68	0	1104674..1105120	-	148	184200661	-	KRH_10150	-	MarR family transcriptional regulator
1016	 68.22	0	1105323..1106807	-	494	184200662	mqo	KRH_10160	-	putative malate--quinone oxidoreductase
1017	 72.51	0	1106918..1108525	-	535	184200663	-	KRH_10170	-	putative ABC transporter substrate-binding protein
1018	 72.36	0	1108785..1109258	-	157	184200664	bcp	KRH_10180	-	hydroperoxide peroxidase
1019	 71.40	0	1109500..1110048	+	182	184200665	-	KRH_10190	-	MarR family transcriptional regulator
1020	 73.25	0	1110557..1111528	+	323	184200666	-	KRH_10200	-	putative dehydrogenase
1021	 70.39	0	1111797..1113674	+	625	184200667	ilvB	KRH_10210	-	acetolactate synthase large subunit
1022	 68.63	0	1113678..1114187	+	169	184200668	ilvN	KRH_10220	-	acetolactate synthase small subunit
1023	 67.54	0	1114303..1115328	+	341	184200669	ilvC	KRH_10230	-	ketol-acid reductoisomerase
1024	 69.24	0	1115557..1117110	+	517	184200670	metG	KRH_10240	-	methionyl-tRNA synthetase
1025	 71.11	0	1117457..1118536	+	359	184200671	leuB	KRH_10250	-	3-isopropylmalate dehydrogenase
1026	 69.95	0	1118643..1119740	+	365	184200672	ilvE	KRH_10260	-	branched-chain amino acid aminotransferase
1027	 71.15	0	1119830..1120609	+	259	184200673	-	KRH_10270	-	fumarylacetoacetate hydrolase family protein
1028	 69.82	0	1120656..1122176	+	506	184200674	gltX	KRH_10280	-	glutamyl-tRNA synthetase
1029	 75.04	+1	1122883..1124637	+	584	184200675	-	KRH_10290	-	hypothetical protein
1030	 76.46	+1	1124634..1126298	+	554	184200676	-	KRH_10300	-	hypothetical protein
1031	 75.65	+1	1126326..1127138	-	270	184200677	-	KRH_10310	-	IclR family transcriptional regulator
1032	 71.61	0	1127290..1128726	+	478	184200678	leuC	KRH_10320	-	3-isopropylmalate dehydratase large subunit
1033	 68.00	0	1128850..1129449	+	199	184200679	leuD	KRH_10330	-	3-isopropylmalate dehydratase small subunit
1034	 69.47	0	1129547..1130866	+	439	184200680	murA	KRH_10340	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1035	 73.98	0	1130982..1131788	+	268	184200681	-	KRH_10350	-	putative acyltransferase
1036	 73.76	0	1131785..1132855	+	356	184200682	gpsA	KRH_10360	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1037	 71.09	0	1132852..1134003	+	383	184200683	ddl	KRH_10370	-	D-alanine--D-alanine ligase
1038	 74.18	0	1134095..1134613	-	172	184200684	-	KRH_10380	-	hypothetical protein
1039	 75.92	+1	1134800..1135912	+	370	184200685	thiL	KRH_10390	-	thiamine-monophosphate kinase
1040	 73.63	0	1135902..1136849	+	315	184200686	-	KRH_10400	-	hypothetical protein
1041	 73.83	0	1136846..1139107	+	753	184200687	recG	KRH_10410	-	ATP-dependent DNA helicase RecG
1042	 74.72	0	1139104..1139736	+	210	184200688	-	KRH_10420	-	hypothetical protein
1043	 74.39	0	1139933..1141111	-	392	184200689	-	KRH_10430	-	aminotransferase
1044	 69.85	0	1141287..1141757	+	156	184200690	coaD	KRH_10440	-	phosphopantetheine adenylyltransferase
1045	 64.97	-1	1141931..1142521	+	196	184200691	-	KRH_10450	-	hypothetical protein
1046	 62.75	-2	1142524..1142727	+	67	184200692	rpmF	KRH_10460	-	50S ribosomal protein L32
1047	 71.63	0	1142729..1143433	+	234	184200693	rnc	KRH_10470	-	ribonuclease III
1048	 73.44	0	1143441..1144370	+	309	184200694	mutM	KRH_10480	-	formamidopyrimidine-DNA glycosylase/AP lyase
1049	 69.62	0	1144530..1145240	+	236	184200695	-	KRH_10490	-	hypothetical protein
1050	 73.48	0	1145342..1146559	-	405	184200696	-	KRH_10500	-	putative steroid dehydrogenase
1051	 74.54	0	1146736..1149465	-	909	184200697	-	KRH_10510	-	putative fatty-acid--CoA ligase
1052	 70.18	0	1149492..1150517	-	341	184200698	-	KRH_10520	-	putative 3-oxoacyl-[acyl-carrier-protein] synthase III
1053	 75.03	+1	1150779..1154423	+	1214	184200699	smc	KRH_10530	-	chromosome partition protein SMC
1054	 70.32	0	1154461..1155063	-	200	184200700	-	KRH_10540	-	hypothetical protein
1055	 74.42	0	1155140..1156468	-	442	184200701	-	KRH_10550	-	MFS transporter
1056	 70.24	0	1156500..1157618	+	372	184200702	ftsY	KRH_10560	-	cell division protein FtsY
1057	 70.74	0	1157851..1159200	+	449	184200703	amtB	KRH_10570	-	ammonium transporter
1058	 69.62	0	1159197..1159535	+	112	184200704	-	KRH_10580	-	nitrogen regulatory protein P-II
1059	 69.28	0	1159721..1161286	+	521	184200705	ffh	KRH_10590	-	signal recognition particle protein
1060	 71.52	0	1161293..1161787	+	164	184200706	-	KRH_10600	-	hypothetical protein
1061	 75.52	+1	1161784..1162653	+	289	184200707	-	KRH_10610	-	hypothetical protein
1062	 67.13	0	1162846..1163274	+	142	184200708	rpsP	KRH_10620	-	30S ribosomal protein S16
1063	 71.08	0	1163271..1163519	+	82	184200709	-	KRH_10630	-	hypothetical protein
1064	 72.92	0	1163647..1164222	+	191	184200710	rimM	KRH_10640	-	putative 16S rRNA processing protein RimM
1065	 74.00	0	1164225..1165220	+	331	184200711	trmD	KRH_10650	-	tRNA (guanine-N(1)-)-methyltransferase
1066	 64.74	-1	1165396..1165758	+	120	184200712	rplS	KRH_10660	-	50S ribosomal protein L19
1067	 74.06	0	1165770..1166459	+	229	184200713	-	KRH_10670	-	signal peptidase I
1068	 70.53	0	1166535..1167311	+	258	184200714	-	KRH_10680	-	signal peptidase I
1069	 74.91	+1	1167233..1168033	+	266	184200715	rnhB	KRH_10690	-	ribonuclease HII
1070	 74.25	0	1168361..1168795	+	144	184200716	-	KRH_10700	-	hypothetical protein
1071	 75.70	+1	1169007..1170335	+	442	184200717	-	KRH_10710	-	hypothetical protein
1072	 73.14	0	1170686..1172245	+	519	184200718	-	KRH_10720	-	putative magnesium chelatase
1073	 74.04	0	1172242..1173570	+	442	184200719	-	KRH_10730	-	putative DNA processing protein
1074	 74.05	0	1173542..1174678	+	378	184200720	xerC	KRH_10740	-	tyrosine recombinase XerC
1075	 70.83	0	1174885..1175388	+	167	184200721	-	KRH_10750	-	hypothetical protein
1076	 70.91	0	1175802..1177073	-	423	184200722	fabF	KRH_10760	-	3-oxoacyl-[acyl-carrier-protein] synthase
1077	 58.94	-2	1177184..1177429	-	81	184200723	acpP	KRH_10770	-	acyl carrier protein
1078	 70.22	0	1177579..1178646	-	355	184200724	fabH	KRH_10780	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1079	 73.25	0	1178709..1179620	-	303	184200725	fabD	KRH_10790	-	malonyl CoA-acyl carrier protein transacylase
1080	 73.14	0	1179712..1180947	-	411	184200726	-	KRH_10800	-	transcription regulator CcdaR
1081	 68.09	0	1181052..1183790	-	912	184200727	aceE	KRH_10810	-	pyruvate dehydrogenase E1 component
1082	 68.82	0	1184153..1184569	+	138	184200728	-	KRH_10820	-	hypothetical protein
70.94	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.