IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.01   STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
48	 55.43	0	49719..49994	-	91	206577615	-	KPK_0048	-	hypothetical protein
49	 62.02	0	50116..51018	-	300	206578384	-	KPK_0049	-	putative transport protein
50	 63.38	0	51170..52600	-	476	206576235	murP	KPK_0050	-	PTS system, N-acetylmuramic acid-specific EIIBC component
51	 62.02	0	52625..53527	-	300	206575804	murQ	KPK_0051	-	N-acetylmuramic acid 6-phosphate etherase
52	 63.92	+1	53690..54853	-	387	206579124	-	KPK_0052	-	drug resistance transporter, Bcr/CflA subfamily
53	 64.69	+1	54899..56263	-	454	206580081	eefC	KPK_0053	-	multidrug efflux transporter EefC
54	 63.58	0	56267..59374	-	1035	206578026	eefB	KPK_0054	-	multidrug efflux permease EefB
55	 62.67	0	59374..60498	-	374	206578875	eefA	KPK_0055	-	multidrug efflux transporter EefA
56	 29.27	-2	60705..60827	+	40	206579940	-	KPK_0057	-	hypothetical protein
57	 34.19	-2	60787..60903	-	38	206576740	-	KPK_0056	-	hypothetical protein
58	 56.83	0	60878..61294	+	138	206578755	-	KPK_0058	-	acetyltransferase, GNAT family
59	 60.65	0	61396..62043	-	215	206579332	-	KPK_0059	-	transcriptional regulator, TetR family
60	 62.65	0	62124..63617	+	497	206578230	-	KPK_0061	-	drug resistance MFS transporter, drug:H+ antiporter-1 (DHA2) family
61	 65.46	+1	63614..64528	-	304	206577630	-	KPK_0060	-	transcriptional regulator, LysR family
62	 61.43	0	64624..65253	+	209	206578933	-	KPK_0062	-	pyridoxamine 5'-phosphate oxidase family protein
63	 60.30	0	65253..65723	+	156	206579478	-	KPK_0063	-	hypothetical protein
64	 60.34	0	65744..66280	-	178	206577339	-	KPK_0064	-	putative peroxidase
65	 67.00	+1	66397..67302	+	301	206578276	-	KPK_0065	-	transcriptional regulator, AraC family
66	 58.64	0	67430..68239	+	269	206577779	nlpA	KPK_0066	-	lipoprotein NlpA
67	 63.27	0	68264..69118	+	284	206578342	-	KPK_0068	-	hypothetical protein
68	 61.14	0	69108..69668	-	186	206578673	-	KPK_0067	-	putative ADP-ribose pyrophosphatase
69	 60.64	0	69836..70615	+	259	206577111	-	KPK_0069	-	hypothetical protein
70	 64.68	+1	70637..71590	+	317	206576244	-	KPK_0071	-	transcriptional regulator, AraC family
71	 62.86	0	71587..72636	-	349	206576842	-	KPK_0070	-	oxidoreductase, zinc-binding dehydrogenase family
72	 52.07	0	72959..73705	+	248	206577931	-	KPK_0072	-	hypothetical protein
73	 63.57	0	73757..74047	-	96	206577125	-	KPK_0073	-	antibiotic biosynthesis monooxygenase domain protein
74	 64.38	+1	74049..75056	-	335	206576123	-	KPK_0074	-	zinc-binding alcohol dehydrogenase family protein
75	 58.97	0	75169..75636	-	155	206576014	-	KPK_0075	-	hypothetical protein
76	 59.35	0	76191..77585	+	464	206580308	-	KPK_0077	-	sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family
77	 60.24	0	77598..79916	+	772	206580909	yicI	KPK_0078	-	alpha-xylosidase
78	 52.97	0	80075..80797	+	240	206575989	-	KPK_0079	-	transcriptional regulator, RpiR family
79	 56.52	0	81707..83086	-	459	206577985	-	KPK_0080	-	glycosyl hydrolase, family 4
80	 53.97	0	83099..84658	-	519	206577556	-	KPK_0081	-	PTS system, IIBC component
81	 62.96	0	84909..86606	-	565	206579773	-	KPK_0082	-	AsmA family protein
82	 60.63	0	86747..88138	-	463	206581086	-	KPK_0083	-	xanthine permease
83	 60.68	0	88423..89625	+	400	206580320	gltS	KPK_0084	-	sodium/glutamate symporter
84	 59.39	0	89740..91251	-	503	206579874	glpK	KPK_0085	-	glycerol kinase
85	 59.27	0	91273..92124	-	283	206576708	glpF	KPK_0086	-	glycerol uptake facilitator protein
86	 50.00	-1	92567..92812	+	81	206576869	-	KPK_0087	-	hypothetical protein
87	 55.66	0	92964..93953	+	329	206576596	sbp	KPK_0088	-	sulfate-binding protein
88	 61.83	0	94123..94887	+	254	206579576	cdh	KPK_0089	-	CDP-diacylglycerol pyrophosphatase
89	 62.84	0	94952..96256	+	434	206578836	-	KPK_0090	-	sodium:sulfate symporter family protein
90	 57.16	0	96349..97116	-	255	206581122	tpiA	KPK_0091	-	triosephosphate isomerase
91	 56.50	0	97226..97825	-	199	206580296	-	KPK_0092	-	hypothetical protein
92	 60.37	0	97938..98366	+	142	206580307	-	KPK_0093	-	hypothetical protein
93	 59.97	0	98367..99113	-	248	206575838	fpr	KPK_0094	-	ferredoxin--NADP(+) reductase
94	 60.83	0	99264..100274	-	336	206577819	glpX	KPK_0095	-	fructose-1,6-bisphosphatase, class II
95	 62.54	0	100325..102406	-	693	206577391	recG	KPK_0096	-	ATP-dependent DNA helicase RecG
96	 61.30	0	102412..103101	-	229	206577394	trmH	KPK_0097	-	tRNA guanosine-2'-O-methyltransferase
97	 57.33	0	103106..105226	-	706	206579714	spoT	KPK_0098	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
98	 53.62	0	105245..105520	-	91	206580733	rpoZ	KPK_0099	-	DNA-directed RNA polymerase, omega subunit
99	 54.81	0	105575..106198	-	207	206580871	gmk	KPK_0100	-	guanylate kinase
100	 63.98	+1	106456..108132	+	558	206576543	ligB	KPK_0101	-	NAD(+)-dependent DNA ligase LigB
101	 59.06	0	108138..108755	-	205	206577321	-	KPK_0102	-	hypothetical protein
102	 60.96	0	108977..110290	+	437	206576576	-	KPK_0103	-	chloride transporter, chloride channel (ClC) family
103	 57.29	0	110340..111203	-	287	206579904	-	KPK_0104	-	conserved hypothetical protein TIGR00255
104	 37.85	-2	111276..111452	+	58	206580192	-	KPK_0105	-	hypothetical protein
105	 40.27	-2	111847..113547	+	566	206578775	-	KPK_0106	-	hypothetical protein
106	 46.07	-1	113634..114599	+	321	206578540	-	KPK_0107	-	putative lipoprotein
107	 46.73	-1	114592..115509	+	305	206576186	-	KPK_0108	-	ABC transporter, ATP-binding protein
108	 45.70	-1	115496..116635	+	379	206580466	-	KPK_0109	-	ABC transporter, permease protein
109	 58.86	0	116731..117447	+	238	206579777	rph	KPK_0110	-	ribonuclease PH
110	 57.32	0	117559..118200	+	213	206579381	pyrE	KPK_0111	-	orotate phosphoribosyltransferase
111	 55.85	0	118238..119254	-	338	206578663	-	KPK_0112	-	SMP-30/gluconolactonase/LRE family protein
112	 55.61	0	119430..120026	-	198	206576017	-	KPK_0113	-	transcriptional regulator domain protein, TetR family
113	 60.13	0	120151..120609	-	152	206580470	dut	KPK_0114	-	dUTP diphosphatase
114	 59.03	0	120587..121804	-	405	206580238	coaBC	KPK_0115	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
115	 54.05	0	121974..122639	+	221	206579335	radC	KPK_0116	-	DNA repair protein RadC
116	 53.16	0	122856..123092	+	78	206578199	rpmB	KPK_0117	-	ribosomal protein L28
117	 41.67	-2	123113..123280	+	55	206580922	rpmG	KPK_0118	-	ribosomal protein L33
118	 58.15	0	123416..124225	+	269	206576628	mutM	KPK_0119	-	formamidopyrimidine-DNA glycosylase
119	 56.25	0	124357..124836	-	159	206576018	coaD	KPK_0120	-	pantetheine-phosphate adenylyltransferase
120	 60.05	0	124839..125609	-	256	206577849	-	KPK_0121	-	glycosyl transferase, group 2 family protein
121	 59.92	0	125609..126883	-	424	206575984	waaA	KPK_0122	-	3-deoxy-D-manno-octulosonic-acid transferase
122	 56.36	0	126975..127964	-	329	206577814	-	KPK_0123	-	glycosyl transferase, group 2 family protein
123	 61.92	0	127994..129088	-	364	206577219	-	KPK_0124	-	glycosyl transferase, group 1 family protein
124	 62.50	0	129091..130218	-	375	206579686	-	KPK_0125	-	putative lipopolysaccharide core biosynthesis protein RfaG
125	 60.54	0	130215..131291	-	358	206579090	rfaQ	KPK_0126	-	lipopolysaccharide core biosynthesis glycosyltransferase RfaQ
126	 55.24	0	131403..132365	+	320	206580845	-	KPK_0127	-	walW protein
127	 51.76	0	132384..133463	+	359	206576993	-	KPK_0128	-	putative lipopolysaccharide 1,2-N-acetylglucosaminetransferase RfaK
128	 60.76	0	133507..134589	-	360	206576181	waaL	KPK_0129	-	surface polymer ligase WaaL
129	 52.70	0	134654..135562	-	302	206575738	-	KPK_0130	-	putative lipopolysaccharide core biosynthesis protein RfaZ
130	 62.76	0	135562..136533	-	323	206577745	rfaC	KPK_0131	-	lipopolysaccharide heptosyltransferase I
131	 61.00	0	136537..137595	-	352	206576091	rfaF	KPK_0132	-	lipopolysaccharide heptosyltransferase II
132	 54.88	0	137604..138536	-	310	206578147	rfaD	KPK_0133	-	ADP-glyceromanno-heptose 6-epimerase
133	 60.05	0	138750..139943	+	397	206577718	kbl	KPK_0134	-	2-amino-3-ketobutyrate coenzyme A ligase
134	 58.48	0	139956..140981	+	341	206579625	tdh	KPK_0135	-	L-threonine 3-dehydrogenase
135	 57.29	0	141151..141939	+	262	206579235	-	KPK_0136	-	glycosyl transferase, group 2 family protein
136	 60.61	0	141945..142901	-	318	206578516	-	KPK_0137	-	polysaccharide deacetylase family protein
137	 61.32	0	142905..144176	-	423	206579386	-	KPK_0138	-	M23 peptidase domain protein
138	 58.25	0	144186..145730	-	514	206577275	gpmI	KPK_0139	-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
139	 53.01	0	145976..146407	+	143	206578346	-	KPK_0140	-	rhodanese domain protein
140	 55.16	0	146512..146763	+	83	206576196	grxC	KPK_0141	-	glutaredoxin 3
141	 55.56	0	146824..147291	+	155	206576226	secB	KPK_0142	-	protein-export chaperone SecB
142	 60.69	0	147291..148310	+	339	206577002	-	KPK_0143	-	NAD-dependent glycerol-3-phosphate dehydrogenase
143	 60.34	0	148384..149205	+	273	206580507	cysE	KPK_0144	-	serine O-acetyltransferase
144	 60.76	0	149287..149760	-	157	206578587	-	KPK_0145	-	RNA methyltransferase, TrmH family, group 2
145	 63.38	0	149941..151125	-	394	206577634	lldD	KPK_0146	-	L-lactate dehydrogenase (cytochrome)
146	 62.40	0	151125..151898	-	257	206578378	-	KPK_0147	-	putative L-lactate dehydrogenase operon regulatory protein LldR
147	 60.57	0	151895..153550	-	551	206579413	lldP	KPK_0148	-	L-lactate permease
57.01	MEAN

6.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.