IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
849	 61.92	0	868366..869628	+	420	206575861	lysA	KPK_0863	-	diaminopimelate decarboxylase
850	 58.75	0	869621..870631	-	336	206576443	-	KPK_0862	-	sugar binding transcriptional regulator, LacI family
851	 58.15	0	870922..872259	+	445	206575941	-	KPK_0864	-	PTS system, lactose/cellobiose family IIC component
852	 58.96	0	872267..873694	+	475	206580260	-	KPK_0865	-	glycosyl hydrolase, family 1
853	 61.11	0	873762..874535	+	257	206577355	-	KPK_0866	-	transcriptional regulator, GntR family
854	 64.79	+1	874532..875011	+	159	206579925	-	KPK_0868	-	acetyltransferase, GNAT family
855	 62.54	0	874972..875988	-	338	206578815	galR	KPK_0867	-	transcriptional regulator GalR
856	 59.81	0	876609..878768	+	719	206580309	aas	KPK_0869	-	2-acyl-glycerophospho-ethanolamine acyltransferase/acyl-acyl-carrier protein synthetase
857	 62.40	0	878761..879954	+	397	206576710	lplT	KPK_0870	-	lysophospholipid transporter
858	 60.81	0	880058..881098	-	346	206575845	tas	KPK_0871	-	NADP(H)-dependent aldo-keto reductase Tas
859	 47.03	-1	881319..881537	-	72	206577955	-	KPK_0872	-	putative lipoprotein
860	 54.62	0	881661..882374	-	237	206577409	-	KPK_0873	-	integral membrane protein, TerC family
861	 64.08	+1	882438..883133	-	231	206576559	mutH	KPK_0874	-	DNA mismatch repair endonuclease MutH
862	 40.28	-2	883219..883362	-	47	206575829	-	KPK_0875	-	hypothetical protein
863	 53.67	0	883816..884346	+	176	206577948	nudH	KPK_0876	-	(Di)nucleoside polyphosphate hydrolase
864	 62.35	0	884359..886605	+	748	206579356	ptsP	KPK_0877	-	phosphoenolpyruvate-protein phosphotransferase
865	 59.36	0	886851..887726	+	291	206577419	lgt	KPK_0878	-	prolipoprotein diacylglyceryl transferase
866	 57.36	0	887733..888527	+	264	206577831	thyA	KPK_0879	-	thymidylate synthase
867	 64.96	+1	888799..889266	+	155	206577604	ppdA	KPK_0880	-	prepilin peptidase-dependent protein A
868	 67.73	+1	889257..889820	+	187	206578361	ppdB	KPK_0881	-	prepilin peptidase dependent protein B
869	 66.41	+1	889835..890224	+	129	206579099	-	KPK_0882	-	hypothetical protein
870	 62.96	0	890209..890532	+	107	206579182	ppdC	KPK_0883	-	prepilin peptidase dependent protein C
871	 62.02	0	890545..893922	+	1125	206580606	recC	KPK_0884	-	exodeoxyribonuclease V, gamma subunit
872	 59.62	0	894076..896928	+	950	206578683	ptrA	KPK_0885	-	protease III
873	 64.57	+1	896925..900461	+	1178	206576716	recB	KPK_0886	-	exodeoxyribonuclease V, beta subunit
874	 67.48	+1	900458..902302	+	614	206576026	recD	KPK_0887	-	exodeoxyribonuclease V, alpha subunit
875	 56.70	0	902362..902682	-	106	206579275	-	KPK_0888	-	hypothetical protein
876	 58.78	0	902914..904245	-	443	206577109	argA	KPK_0889	-	amino-acid N-acetyltransferase
877	 60.61	0	904473..905726	+	417	206575946	amiC	KPK_0890	-	N-acetylmuramoyl-L-alanine amidase AmiC
878	 63.88	+1	905744..906820	+	358	206576491	cobD	KPK_0891	-	L-threonine-O-3-phosphate decarboxylase
879	 65.56	+1	906824..907726	-	300	206577126	pduX	KPK_0892	-	propanediol utilization protein PduX
880	 62.55	0	907782..908996	-	404	206576328	pduW	KPK_0893	-	propionate kinase, PduW
881	 61.00	0	908993..909433	-	146	206579060	pduV	KPK_0894	-	propanediol utilization protein PduV
882	 61.54	0	909438..909788	-	116	206579632	pduU	KPK_0895	-	propanediol utilization protein pduU
883	 63.60	0	909788..910342	-	184	206580228	pduT	KPK_0896	-	propanediol utilization protein PduT
884	 65.93	+1	910345..911697	-	450	206579430	pduS	KPK_0897	-	propanediol utilization protein PduS
885	 65.41	+1	911694..912806	-	370	206578266	pduQ	KPK_0898	-	propanediol utilization protein PduQ
886	 61.33	0	912818..914203	-	461	206577507	pduP	KPK_0899	-	propanediol utilization protein PduP
887	 63.82	+1	914200..915216	-	338	206580295	pduO	KPK_0900	-	propanediol utilization protein, PduO
888	 60.51	0	915227..915502	-	91	206576876	pduN	KPK_0901	-	propanediol utilization protein PduN
889	 66.67	+1	915506..915997	-	163	206578535	pduM	KPK_0902	-	propanediol utilization protein PduM
890	 60.66	0	915994..916626	-	210	206581127	pduL	KPK_0903	-	propanediol utilization protein PduL
891	 65.81	+1	916626..917093	-	155	206576210	pduK	KPK_0904	-	propanediol utilization protein PduK
892	 59.42	0	917115..917390	-	91	206578182	pduJ	KPK_0905	-	propanediol utilization protein PduJ
893	 59.26	0	917409..917759	-	116	206579863	pduH	KPK_0906	-	propanediol utilization protein PduH
894	 60.72	0	917749..919581	-	610	206579698	pduG	KPK_0907	-	propanediol utilization diol dehydratase reactivation protein
895	 61.71	0	919594..920118	-	174	206579980	pduE	KPK_0908	-	propanediol utilization dehydratase, small subunit
896	 58.88	0	920133..920813	-	226	206580874	pduD	KPK_0909	-	propanediol utilization dehydratase, medium subunit
897	 58.56	0	920824..922488	-	554	206575748	pduC	KPK_0910	-	propanediol utilization dehydratase, large subunit
898	 61.99	0	922507..923319	-	270	206576705	pduB	KPK_0911	-	propanediol utilization protein PduB
899	 56.14	0	923316..923600	-	94	206579683	pduA	KPK_0912	-	propanediol utilization protein PduA
900	 30.70	-2	923747..923860	+	37	206577936	-	KPK_0913	-	hypothetical protein
901	 58.02	0	924126..924935	+	269	206576458	pduF	KPK_0914	-	propanediol diffusion facilitator
902	 53.84	0	925138..926049	+	303	206580372	pocR	KPK_0915	-	regulatory protein PocR
903	 64.42	+1	926601..927977	+	458	206578057	cobB	KPK_0916	-	cobyrinic acid a,c-diamide synthase
904	 65.42	+1	927974..928933	+	319	206578714	cbiB	KPK_0917	-	cobalamin biosynthesis protein CbiB
905	 63.99	+1	928944..929579	+	211	206576566	cobH	KPK_0918	-	precorrin-8X methylmutase
906	 63.25	0	929576..930715	+	379	206577257	cbiD	KPK_0919	-	cobalamin biosynthesis protein CbiD
907	 68.65	+1	930709..931314	+	201	206579970	cbiE	KPK_0920	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
908	 64.21	+1	931304..931873	+	189	206579390	cbiT	KPK_0921	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
909	 63.57	0	931866..932639	+	257	206578124	cobM	KPK_0922	-	precorrin-4 C11-methyltransferase
910	 65.53	+1	932620..933675	+	351	206577573	cbiG	KPK_0923	-	cobalamin biosynthesis protein CbiG
911	 60.19	0	933675..934400	+	241	206576862	cobJ	KPK_0924	-	precorrin-3B C17-methyltransferase
912	 66.41	+1	934397..935182	+	261	206576292	cobK	KPK_0925	-	precorrin-6x reductase
913	 61.26	0	935193..935987	+	264	206581110	cbiK	KPK_0926	-	sirohydrochlorin cobaltochelatase
914	 66.24	+1	935984..936694	+	236	206578913	cobI	KPK_0927	-	precorrin-2 C20-methyltransferase
915	 62.33	0	936694..937431	+	245	206579243	cbiM	KPK_0928	-	cobalamin biosynthesis protein CbiM
916	 58.87	0	937433..937714	+	93	206577664	cbiN	KPK_0929	-	cobalt transport protein
917	 61.36	0	937701..938378	+	225	206577163	cbiQ	KPK_0930	-	cobalt ABC transporter, permease protein
918	 62.55	0	938387..939211	+	274	206577904	cbiO	KPK_0931	-	cobalt ABC transporter, ATP-binding protein
919	 63.06	0	939208..940731	+	507	206575940	cobQ	KPK_0932	-	cobyric acid synthase CobQ
920	 64.29	+1	940725..941270	+	181	206576693	cobU	KPK_0933	-	cobinamide kinase/cobinamide phosphate guanyltransferase
921	 65.91	+1	941314..942369	+	351	206580152	cobT	KPK_0934	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
922	 53.05	0	942594..943019	-	141	206580906	-	KPK_0935	-	type VI secretion system lysozyme-related protein
923	 51.31	0	943023..943556	-	177	206579068	-	KPK_0936	-	type VI secretion lipoprotein, VC_A0113 family
924	 56.14	0	943537..944619	-	360	206579851	-	KPK_0937	-	type VI secretion protein, VC_A0111 family
925	 56.56	0	944583..946343	-	586	206577037	vasA	KPK_0938	-	type VI secretion protein, VC_A0110 family
926	 57.25	0	946468..949803	-	1111	206576260	-	KPK_0939	-	ImcF domain protein
927	 39.25	-2	949803..950951	-	382	206575954	-	KPK_0940	-	hypothetical protein
928	 41.64	-2	951390..952496	-	368	206577602	-	KPK_0941	-	hypothetical protein
929	 45.62	-1	952586..953692	-	368	206577155	-	KPK_0942	-	hypothetical protein
930	 46.34	-1	953670..955460	-	596	206579443	-	KPK_0943	-	hypothetical protein
931	 54.09	0	955480..957960	-	826	206578457	-	KPK_0944	-	type VI secretion system Vgr family protein
932	 59.39	0	958176..959879	-	567	206580585	-	KPK_0945	-	OmpA domain protein
933	 54.80	0	959882..960547	-	221	206580425	-	KPK_0946	-	type IV/VI secretion system protein, DotU family
934	 54.96	0	960544..961884	-	446	206577990	-	KPK_0947	-	hypothetical protein
935	 47.39	-1	961886..962134	-	82	206578337	-	KPK_0948	-	hypothetical protein
936	 33.33	-2	962625..962780	-	51	206576408	-	KPK_0949	-	hypothetical protein
937	 59.47	0	963889..964986	+	365	206579920	mltA	KPK_0953	-	membrane-bound lytic murein transglycosylase A
938	 61.11	0	965074..965883	+	269	206580476	-	KPK_0954	-	ThiF family protein
939	 63.47	0	966025..966462	-	145	206578741	csdE	KPK_0955	-	cysteine desulfuration protein CsdE
940	 66.58	+1	966462..967667	-	401	206579392	csdA	KPK_0956	-	cysteine desulfurase, catalytic subunit CsdA
941	 50.67	0	967865..968089	+	74	206577668	-	KPK_0957	-	putative lipoprotein
942	 53.49	0	968441..969358	+	305	206577305	gcvA	KPK_0958	-	glycine cleavage system transcriptional activator
943	 55.56	0	969378..969773	+	131	206577710	-	KPK_0959	-	hypothetical protein
944	 59.13	0	969766..970866	+	366	206577966	-	KPK_0960	-	hypothetical protein
945	 58.65	0	970915..971625	-	236	206580105	fucR	KPK_0961	-	L-fucose operon activator
946	 58.39	0	971684..972106	-	140	206580676	fucU	KPK_0962	-	fucose operon protein FucU
947	 64.83	+1	972108..973526	-	472	206576182	fucK	KPK_0963	-	L-fuculokinase
948	 60.00	0	973518..973637	+	39	206577715	-	KPK_0965	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.