IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.01   STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
772	 46.92	-1	794134..794766	+	210	206577454	-	KPK_0785	-	hypothetical protein
773	 49.21	-1	795820..796512	+	230	206576758	-	KPK_0786	-	hypothetical protein
774	 51.16	0	796869..797300	+	143	206577920	-	KPK_0787	-	hypothetical protein
775	 53.16	0	797399..798538	+	379	206576639	-	KPK_0788	-	hypothetical protein
776	 58.60	0	799139..800527	-	462	206578627	-	KPK_0789	-	transporter, major facilitator family
777	 57.53	0	800657..801586	+	309	206577921	-	KPK_0790	-	transcriptional regulator, LysR family
778	 57.59	0	801947..802750	-	267	206579817	-	KPK_0791	-	carboxymuconolactone decarboxylase family protein
779	 59.51	0	802783..803802	-	339	206579048	-	KPK_0792	-	oxidoreductase, aldo/keto reductase family
780	 57.27	0	803823..804386	-	187	206580963	-	KPK_0793	-	flavodoxin fold family protein
781	 51.78	0	804389..804697	-	102	206580195	-	KPK_0794	-	hypothetical protein
782	 54.22	0	804836..805735	+	299	206579234	-	KPK_0795	-	transcriptional regulator, LysR family
783	 64.13	+1	805905..806180	+	91	206578503	-	KPK_0796	-	hypothetical protein
784	 60.03	0	806184..806756	-	190	206579729	-	KPK_0797	-	hypothetical protein
785	 56.80	0	806775..807068	-	97	206578974	-	KPK_0798	-	YciL domain protein
786	 59.39	0	807288..807617	+	109	206575891	arsR_1	KPK_0799	-	arsenical resistance operon repressor
787	 61.25	0	807670..808962	+	430	206577873	arsB_1	KPK_0800	-	arsenical pump membrane protein
788	 58.87	0	808972..809394	+	140	206577469	arsC_1	KPK_0801	-	arsenate reductase
789	 60.75	0	809872..811425	+	517	206578261	-	KPK_0802	-	amino acid/peptide transporter
790	 56.33	0	811609..811908	+	99	206580954	-	KPK_0803	-	hypothetical protein
791	 63.98	+1	812175..813623	-	482	206580172	mdtP	KPK_0804	-	multidrug resistance outer membrane protein MdtP
792	 65.27	+1	813620..815557	-	645	206579015	mdtO	KPK_0805	-	multidrug resistance protein MdtO
793	 64.13	+1	815570..816595	-	341	206580947	mdtN	KPK_0806	-	multidrug resistance protein MdtN
794	 56.41	0	816602..816874	-	90	206580601	-	KPK_0807	-	hypothetical protein
795	 52.81	0	817081..817311	+	76	206578495	-	KPK_0808	-	hypothetical protein
796	 51.65	0	817323..817595	+	90	206576874	-	KPK_0809	-	hypothetical protein
797	 60.63	0	817638..818879	-	413	206580312	-	KPK_0810	-	putative cyclic diguanylate phosphodiesterase
798	 61.04	0	819047..819952	-	301	206575974	fimH	KPK_0811	-	fimbrial protein FimH
799	 63.27	0	819970..820470	-	166	206576049	fimG	KPK_0812	-	fimbrial protein FimG
800	 62.31	0	820483..821010	-	175	206577173	fimF	KPK_0813	-	fimbrial protein FimF
801	 62.35	0	821021..823636	-	871	206577896	fimD	KPK_0814	-	outer membrane usher protein fimD
802	 58.87	0	823717..824421	-	234	206578956	fimC	KPK_0815	-	chaperone protein FimC
803	 60.80	0	824471..824998	-	175	206579140	-	KPK_0816	-	fimbrial protein
804	 60.29	0	825078..825626	-	182	206579227	fimA	KPK_0817	-	type-1 fimbrial protein
805	 54.19	0	826107..826715	-	202	206578497	fimE	KPK_0818	-	type 1 fimbriae regulatory protein FimE
806	 37.50	-2	826906..827025	-	39	206578435	-	KPK_0819	-	hypothetical protein
807	 51.75	0	827179..827808	-	209	206577666	fimB	KPK_0820	-	type 1 fimbriae regulatory protein FimB
808	 43.79	-1	827832..827984	-	50	206576283	-	KPK_0821	-	hypothetical protein
809	 58.91	0	828098..828226	+	42	206580966	-	KPK_0822	-	hypothetical protein
810	 58.94	0	828637..828882	-	81	206580742	-	KPK_0823	-	hypothetical protein
811	 51.57	0	829232..829774	+	180	206580002	-	KPK_0824	-	fimbrial protein
812	 43.57	-2	829836..830519	+	227	206579881	-	KPK_0825	-	gram-negative pilus assembly chaperone
813	 53.57	0	830532..833012	+	826	206579142	-	KPK_0826	-	fimbrial usher protein
814	 49.25	-1	833286..834014	+	242	206578358	-	KPK_0827	-	hypothetical protein
815	 63.23	0	834151..835110	+	319	206579816	-	KPK_0829	-	transporter, Ni2+-Co2+ transporter (NiCoT) family
816	 61.93	0	835107..835613	-	168	206576374	-	KPK_0828	-	transcriptional regulator, MarR family
817	 64.21	+1	835695..836591	+	298	206579792	-	KPK_0830	-	hypothetical protein
818	 53.81	0	836690..836899	-	69	206580688	-	KPK_0831	-	hypothetical protein
819	 53.53	0	837605..838213	+	202	206578759	mrkF	KPK_0832	-	mrkF protein
820	 53.17	0	838285..839010	+	241	206579533	-	KPK_0833	-	gram-negative pili assembly chaperone
821	 58.71	0	839022..841508	+	828	206579842	mrkC	KPK_0834	-	outer membrane usher protein MrkC
822	 58.03	0	841499..842494	+	331	206580352	-	KPK_0835	-	fimbrial protein
823	 57.23	0	842508..843143	+	211	206578638	-	KPK_0836	-	fimbrial protein
824	 45.75	-1	843179..843895	-	238	206576077	-	KPK_0837	-	cyclic diguanylate phosphodiesterase (EAL) domain protein
825	 47.01	-1	844039..844623	-	194	206575999	-	KPK_0838	-	transcriptional regulator, LuxR family
826	 44.68	-1	844629..845333	-	234	206576582	-	KPK_0839	-	type IV pilus assembly family protein
827	 63.59	0	845716..846594	-	292	206580645	-	KPK_0840	-	oxidoreductase, aldo/keto reductase family
828	 56.75	0	846714..847943	-	409	206580089	-	KPK_0841	-	serine transporter family protein
829	 61.69	0	848068..848529	-	153	206576082	-	KPK_0842	-	hypothetical protein
830	 64.25	+1	848632..849501	+	289	206580953	-	KPK_0843	-	transcriptional regulator, LysR family
831	 64.89	+1	849620..850798	+	392	206578252	-	KPK_0844	-	acetyl-CoA acetyltransferase
832	 54.17	0	851048..851743	+	231	206577460	-	KPK_0845	-	putative oligogalacturonate-specific porin
833	 56.89	0	851878..853053	-	391	206580055	ogl	KPK_0846	-	oligogalacturonate lyase
834	 51.63	0	853177..853329	-	50	206577830	-	KPK_0847	-	hypothetical protein
835	 60.24	0	853541..854302	+	253	206578131	kduD	KPK_0848	-	2-deoxy-D-gluconate 3-dehydrogenase
836	 58.86	0	854601..856022	+	473	206576925	araE	KPK_0850	-	arabinose-proton symporter
837	 63.35	0	856019..857014	-	331	206577658	-	KPK_0849	-	sugar binding transcriptional regulator, LacI family
838	 57.73	0	857256..858497	+	413	206576286	-	KPK_0851	-	oligosaccharide:H+ symporter
839	 62.42	0	858514..859950	+	478	206578244	cscA	KPK_0852	-	beta-fructofuranosidase
840	 55.95	0	860072..861415	+	447	206577303	-	KPK_0853	-	putative glycoporin RfaY
841	 56.10	0	861475..862761	-	428	206579309	togB	KPK_0854	-	oligogalacturonide ABC transporter, periplasmic pectic oligomer-binding protein
842	 55.50	0	862778..863905	-	375	206578602	togA	KPK_0855	-	oligogalacturonide ABC transporter, ATP-binding protein
843	 56.04	0	863918..864820	-	300	206580532	togN	KPK_0856	-	oligogalacturonide ABC transporter, permease protein TogN
844	 52.75	0	864813..865703	-	296	206576411	togM	KPK_0857	-	oligogalacturonide ABC transporter, permease protein TogM
845	 45.83	-1	866010..866153	-	47	206578884	-	KPK_0858	-	hypothetical protein
846	 57.80	0	866157..866483	-	108	206577982	kdgF	KPK_0859	-	pectin degradation protein KdgF
847	 62.46	0	866623..867336	+	237	206579517	-	KPK_0861	-	aspartate racemase family protein
848	 64.83	+1	867302..868228	-	308	206580450	lysR	KPK_0860	-	transcriptional activator protein LysR
849	 61.92	0	868366..869628	+	420	206575861	lysA	KPK_0863	-	diaminopimelate decarboxylase
850	 58.75	0	869621..870631	-	336	206576443	-	KPK_0862	-	sugar binding transcriptional regulator, LacI family
851	 58.15	0	870922..872259	+	445	206575941	-	KPK_0864	-	PTS system, lactose/cellobiose family IIC component
852	 58.96	0	872267..873694	+	475	206580260	-	KPK_0865	-	glycosyl hydrolase, family 1
853	 61.11	0	873762..874535	+	257	206577355	-	KPK_0866	-	transcriptional regulator, GntR family
854	 64.79	+1	874532..875011	+	159	206579925	-	KPK_0868	-	acetyltransferase, GNAT family
855	 62.54	0	874972..875988	-	338	206578815	galR	KPK_0867	-	transcriptional regulator GalR
856	 59.81	0	876609..878768	+	719	206580309	aas	KPK_0869	-	2-acyl-glycerophospho-ethanolamine acyltransferase/acyl-acyl-carrier protein synthetase
857	 62.40	0	878761..879954	+	397	206576710	lplT	KPK_0870	-	lysophospholipid transporter
858	 60.81	0	880058..881098	-	346	206575845	tas	KPK_0871	-	NADP(H)-dependent aldo-keto reductase Tas
859	 47.03	-1	881319..881537	-	72	206577955	-	KPK_0872	-	putative lipoprotein
860	 54.62	0	881661..882374	-	237	206577409	-	KPK_0873	-	integral membrane protein, TerC family
861	 64.08	+1	882438..883133	-	231	206576559	mutH	KPK_0874	-	DNA mismatch repair endonuclease MutH
862	 40.28	-2	883219..883362	-	47	206575829	-	KPK_0875	-	hypothetical protein
863	 53.67	0	883816..884346	+	176	206577948	nudH	KPK_0876	-	(Di)nucleoside polyphosphate hydrolase
864	 62.35	0	884359..886605	+	748	206579356	ptsP	KPK_0877	-	phosphoenolpyruvate-protein phosphotransferase
865	 59.36	0	886851..887726	+	291	206577419	lgt	KPK_0878	-	prolipoprotein diacylglyceryl transferase
866	 57.36	0	887733..888527	+	264	206577831	thyA	KPK_0879	-	thymidylate synthase
867	 64.96	+1	888799..889266	+	155	206577604	ppdA	KPK_0880	-	prepilin peptidase-dependent protein A
868	 67.73	+1	889257..889820	+	187	206578361	ppdB	KPK_0881	-	prepilin peptidase dependent protein B
869	 66.41	+1	889835..890224	+	129	206579099	-	KPK_0882	-	hypothetical protein
870	 62.96	0	890209..890532	+	107	206579182	ppdC	KPK_0883	-	prepilin peptidase dependent protein C
871	 62.02	0	890545..893922	+	1125	206580606	recC	KPK_0884	-	exodeoxyribonuclease V, gamma subunit
57.01	MEAN

6.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.