IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
749	 60.23	0	770556..773429	+	957	206576161	gcvP	KPK_0761	-	glycine dehydrogenase (decarboxylating)
750	 62.37	0	773490..774233	+	247	206578211	-	KPK_0762	-	NAD dependent epimerase/dehydratase family
751	 64.09	+1	774549..775052	-	167	206576713	scsD	KPK_0763	-	suppressor for copper-sensitivity D
752	 54.90	0	775042..775653	-	203	206577589	scsC	KPK_0764	-	suppressor for copper-sensitivity C
753	 64.22	+1	775655..777658	-	667	206576991	scsB	KPK_0765	-	suppressor for copper-sensitivity B
754	 62.50	0	777714..778073	-	119	206578733	scsA	KPK_0766	-	suppressor for copper-sensitivity A
755	 47.01	-1	778048..778164	+	38	206578174	-	KPK_0767	-	hypothetical protein
756	 56.42	0	778198..779631	-	477	206578920	bglA	KPK_0768	-	6-phospho-beta-glucosidase BglA
757	 52.24	0	779751..780485	-	244	206579585	-	KPK_0769	-	transcriptional regulator, RpiR family
758	 51.60	0	780530..780841	+	103	206576438	-	KPK_0770	-	hypothetical protein
759	 57.88	0	781005..781664	+	219	206581111	-	KPK_0771	-	channel protein, hemolysin III family
760	 62.20	0	781820..782803	-	327	206575880	ygfZ	KPK_0772	-	tRNA-modifying protein YgfZ
761	 53.18	0	783049..783315	+	88	206576457	-	KPK_0773	-	TPR repeat protein
762	 62.29	0	783296..783706	+	136	206576569	-	KPK_0774	-	hypothetical protein
763	 56.13	0	783713..784234	-	173	206579862	fldB	KPK_0775	-	flavodoxin
764	 61.09	0	784335..785231	+	298	206576348	xerD	KPK_0776	-	tyrosine recombinase XerD
765	 57.70	0	785254..785967	+	237	206576982	dsbC	KPK_0777	-	thiol:disulfide interchange protein DsbC
766	 62.28	0	785973..787706	+	577	206577627	recJ	KPK_0778	-	single-stranded-DNA-specific exonuclease RecJ
767	 56.14	0	787792..788890	+	365	206578228	prfB	KPK_0779	-	peptide chain release factor 2
768	 56.13	0	788900..790417	+	505	206578828	lysS	KPK_0780	-	lysyl-tRNA synthetase LysS
769	 61.08	0	790648..791202	-	184	206579322	idi	KPK_0781	-	isopentenyl-diphosphate delta-isomerase
770	 59.86	0	791495..792229	+	244	206580990	-	KPK_0782	-	M23 peptidase domain protein
771	 49.24	-1	792525..794165	+	546	206580411	-	KPK_0784	-	site-specific recombinase, phage integrase family
772	 46.92	-1	794134..794766	+	210	206577454	-	KPK_0785	-	hypothetical protein
773	 49.21	-1	795820..796512	+	230	206576758	-	KPK_0786	-	hypothetical protein
774	 51.16	0	796869..797300	+	143	206577920	-	KPK_0787	-	hypothetical protein
775	 53.16	0	797399..798538	+	379	206576639	-	KPK_0788	-	hypothetical protein
776	 58.60	0	799139..800527	-	462	206578627	-	KPK_0789	-	transporter, major facilitator family
777	 57.53	0	800657..801586	+	309	206577921	-	KPK_0790	-	transcriptional regulator, LysR family
778	 57.59	0	801947..802750	-	267	206579817	-	KPK_0791	-	carboxymuconolactone decarboxylase family protein
779	 59.51	0	802783..803802	-	339	206579048	-	KPK_0792	-	oxidoreductase, aldo/keto reductase family
780	 57.27	0	803823..804386	-	187	206580963	-	KPK_0793	-	flavodoxin fold family protein
781	 51.78	0	804389..804697	-	102	206580195	-	KPK_0794	-	hypothetical protein
782	 54.22	0	804836..805735	+	299	206579234	-	KPK_0795	-	transcriptional regulator, LysR family
783	 64.13	+1	805905..806180	+	91	206578503	-	KPK_0796	-	hypothetical protein
784	 60.03	0	806184..806756	-	190	206579729	-	KPK_0797	-	hypothetical protein
785	 56.80	0	806775..807068	-	97	206578974	-	KPK_0798	-	YciL domain protein
786	 59.39	0	807288..807617	+	109	206575891	arsR_1	KPK_0799	-	arsenical resistance operon repressor
787	 61.25	0	807670..808962	+	430	206577873	arsB_1	KPK_0800	-	arsenical pump membrane protein
788	 58.87	0	808972..809394	+	140	206577469	arsC_1	KPK_0801	-	arsenate reductase
789	 60.75	0	809872..811425	+	517	206578261	-	KPK_0802	-	amino acid/peptide transporter
790	 56.33	0	811609..811908	+	99	206580954	-	KPK_0803	-	hypothetical protein
791	 63.98	+1	812175..813623	-	482	206580172	mdtP	KPK_0804	-	multidrug resistance outer membrane protein MdtP
792	 65.27	+1	813620..815557	-	645	206579015	mdtO	KPK_0805	-	multidrug resistance protein MdtO
793	 64.13	+1	815570..816595	-	341	206580947	mdtN	KPK_0806	-	multidrug resistance protein MdtN
794	 56.41	0	816602..816874	-	90	206580601	-	KPK_0807	-	hypothetical protein
795	 52.81	0	817081..817311	+	76	206578495	-	KPK_0808	-	hypothetical protein
796	 51.65	0	817323..817595	+	90	206576874	-	KPK_0809	-	hypothetical protein
797	 60.63	0	817638..818879	-	413	206580312	-	KPK_0810	-	putative cyclic diguanylate phosphodiesterase
798	 61.04	0	819047..819952	-	301	206575974	fimH	KPK_0811	-	fimbrial protein FimH
799	 63.27	0	819970..820470	-	166	206576049	fimG	KPK_0812	-	fimbrial protein FimG
800	 62.31	0	820483..821010	-	175	206577173	fimF	KPK_0813	-	fimbrial protein FimF
801	 62.35	0	821021..823636	-	871	206577896	fimD	KPK_0814	-	outer membrane usher protein fimD
802	 58.87	0	823717..824421	-	234	206578956	fimC	KPK_0815	-	chaperone protein FimC
803	 60.80	0	824471..824998	-	175	206579140	-	KPK_0816	-	fimbrial protein
804	 60.29	0	825078..825626	-	182	206579227	fimA	KPK_0817	-	type-1 fimbrial protein
805	 54.19	0	826107..826715	-	202	206578497	fimE	KPK_0818	-	type 1 fimbriae regulatory protein FimE
806	 37.50	-2	826906..827025	-	39	206578435	-	KPK_0819	-	hypothetical protein
807	 51.75	0	827179..827808	-	209	206577666	fimB	KPK_0820	-	type 1 fimbriae regulatory protein FimB
808	 43.79	-1	827832..827984	-	50	206576283	-	KPK_0821	-	hypothetical protein
809	 58.91	0	828098..828226	+	42	206580966	-	KPK_0822	-	hypothetical protein
810	 58.94	0	828637..828882	-	81	206580742	-	KPK_0823	-	hypothetical protein
811	 51.57	0	829232..829774	+	180	206580002	-	KPK_0824	-	fimbrial protein
812	 43.57	-2	829836..830519	+	227	206579881	-	KPK_0825	-	gram-negative pilus assembly chaperone
813	 53.57	0	830532..833012	+	826	206579142	-	KPK_0826	-	fimbrial usher protein
814	 49.25	-1	833286..834014	+	242	206578358	-	KPK_0827	-	hypothetical protein
815	 63.23	0	834151..835110	+	319	206579816	-	KPK_0829	-	transporter, Ni2+-Co2+ transporter (NiCoT) family
816	 61.93	0	835107..835613	-	168	206576374	-	KPK_0828	-	transcriptional regulator, MarR family
817	 64.21	+1	835695..836591	+	298	206579792	-	KPK_0830	-	hypothetical protein
818	 53.81	0	836690..836899	-	69	206580688	-	KPK_0831	-	hypothetical protein
819	 53.53	0	837605..838213	+	202	206578759	mrkF	KPK_0832	-	mrkF protein
820	 53.17	0	838285..839010	+	241	206579533	-	KPK_0833	-	gram-negative pili assembly chaperone
821	 58.71	0	839022..841508	+	828	206579842	mrkC	KPK_0834	-	outer membrane usher protein MrkC
822	 58.03	0	841499..842494	+	331	206580352	-	KPK_0835	-	fimbrial protein
823	 57.23	0	842508..843143	+	211	206578638	-	KPK_0836	-	fimbrial protein
824	 45.75	-1	843179..843895	-	238	206576077	-	KPK_0837	-	cyclic diguanylate phosphodiesterase (EAL) domain protein
825	 47.01	-1	844039..844623	-	194	206575999	-	KPK_0838	-	transcriptional regulator, LuxR family
826	 44.68	-1	844629..845333	-	234	206576582	-	KPK_0839	-	type IV pilus assembly family protein
827	 63.59	0	845716..846594	-	292	206580645	-	KPK_0840	-	oxidoreductase, aldo/keto reductase family
828	 56.75	0	846714..847943	-	409	206580089	-	KPK_0841	-	serine transporter family protein
829	 61.69	0	848068..848529	-	153	206576082	-	KPK_0842	-	hypothetical protein
830	 64.25	+1	848632..849501	+	289	206580953	-	KPK_0843	-	transcriptional regulator, LysR family
831	 64.89	+1	849620..850798	+	392	206578252	-	KPK_0844	-	acetyl-CoA acetyltransferase
832	 54.17	0	851048..851743	+	231	206577460	-	KPK_0845	-	putative oligogalacturonate-specific porin
833	 56.89	0	851878..853053	-	391	206580055	ogl	KPK_0846	-	oligogalacturonate lyase
834	 51.63	0	853177..853329	-	50	206577830	-	KPK_0847	-	hypothetical protein
835	 60.24	0	853541..854302	+	253	206578131	kduD	KPK_0848	-	2-deoxy-D-gluconate 3-dehydrogenase
836	 58.86	0	854601..856022	+	473	206576925	araE	KPK_0850	-	arabinose-proton symporter
837	 63.35	0	856019..857014	-	331	206577658	-	KPK_0849	-	sugar binding transcriptional regulator, LacI family
838	 57.73	0	857256..858497	+	413	206576286	-	KPK_0851	-	oligosaccharide:H+ symporter
839	 62.42	0	858514..859950	+	478	206578244	cscA	KPK_0852	-	beta-fructofuranosidase
840	 55.95	0	860072..861415	+	447	206577303	-	KPK_0853	-	putative glycoporin RfaY
841	 56.10	0	861475..862761	-	428	206579309	togB	KPK_0854	-	oligogalacturonide ABC transporter, periplasmic pectic oligomer-binding protein
842	 55.50	0	862778..863905	-	375	206578602	togA	KPK_0855	-	oligogalacturonide ABC transporter, ATP-binding protein
843	 56.04	0	863918..864820	-	300	206580532	togN	KPK_0856	-	oligogalacturonide ABC transporter, permease protein TogN
844	 52.75	0	864813..865703	-	296	206576411	togM	KPK_0857	-	oligogalacturonide ABC transporter, permease protein TogM
845	 45.83	-1	866010..866153	-	47	206578884	-	KPK_0858	-	hypothetical protein
846	 57.80	0	866157..866483	-	108	206577982	kdgF	KPK_0859	-	pectin degradation protein KdgF
847	 62.46	0	866623..867336	+	237	206579517	-	KPK_0861	-	aspartate racemase family protein
848	 64.83	+1	867302..868228	-	308	206580450	lysR	KPK_0860	-	transcriptional activator protein LysR
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.