IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
719	 57.06	0	739771..740478	-	235	206576144	endA	KPK_0731	-	endonuclease-1
720	 60.08	0	740573..741073	-	166	206578701	sprT	KPK_0732	-	protein SprT
721	 58.06	0	741151..742545	-	464	206580389	galP	KPK_0733	-	galactose-proton symporter
722	 57.66	0	742924..744078	-	384	206577838	metK	KPK_0734	-	S-adenosylmethionine synthetase
723	 46.78	-1	744226..744396	-	56	206577200	-	KPK_0735	-	hypothetical protein
724	 40.91	-2	744780..744911	+	43	206579646	-	KPK_0736	-	hypothetical protein
725	 60.14	0	744998..746896	+	632	206579063	speA	KPK_0737	-	arginine decarboxylase
726	 59.39	0	747130..748050	+	306	206580808	speB	KPK_0738	-	agmatinase
727	 56.11	0	748182..749450	-	422	206580248	oprD	KPK_0739	-	porin D
728	 48.89	-1	749569..749703	+	44	206575924	-	KPK_0740	-	hypothetical protein
729	 57.84	0	749828..750586	-	252	206578062	-	KPK_0741	-	peptidase, M48B family
730	 59.59	0	750867..752858	+	663	206575753	tktA_1	KPK_0742	-	transketolase
731	 55.88	0	753243..754271	+	342	206577912	epd	KPK_0743	-	D-erythrose-4-phosphate dehydrogenase
732	 55.58	0	754311..755474	+	387	206579376	pgk	KPK_0744	-	phosphoglycerate kinase
733	 54.44	0	755572..756651	+	359	206578717	fbaA	KPK_0745	-	fructose-bisphosphate aldolase
734	 56.64	0	756843..757700	+	285	206580535	mscS	KPK_0746	-	small-conductance mechanosensitive channel
735	 58.02	0	757852..758487	+	211	206579893	argO	KPK_0747	-	arginine exporter protein ArgO
736	 56.26	0	758577..759335	+	252	206576957	-	KPK_0748	-	hypothetical protein
737	 59.73	0	759390..760283	-	297	206576372	argP	KPK_0749	-	transcriptional regulator ArgP
738	 58.79	0	760451..761110	+	219	206578185	rpiA	KPK_0750	-	ribose 5-phosphate isomerase A
739	 42.42	-2	761217..761348	-	43	206577599	-	KPK_0751	-	hypothetical protein
740	 57.58	0	761380..762612	+	410	206578579	serA	KPK_0752	-	phosphoglycerate dehydrogenase
741	 61.14	0	762696..763292	-	198	206579135	-	KPK_0753	-	5,10-methenyltetrahydrofolate synthetase
742	 49.39	-1	763616..763945	-	109	206578889	-	KPK_0754	-	Zapa family protein
743	 55.79	0	764112..764690	+	192	206578319	-	KPK_0755	-	YecA family protein
744	 57.93	0	764714..766030	+	438	206579369	pepP	KPK_0756	-	Xaa-Pro aminopeptidase
745	 64.72	+1	766027..767205	+	392	206578789	ubiH	KPK_0757	-	2-octaprenyl-6-methoxyphenol hydroxylase
746	 61.76	0	767216..768418	+	400	206580544	-	KPK_0758	-	ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
747	 58.69	0	768808..769935	+	375	206579883	gcvT	KPK_0759	-	glycine cleavage system T protein
748	 55.64	0	769960..770349	+	129	206577051	gcvH	KPK_0760	-	glycine cleavage system H protein
749	 60.23	0	770556..773429	+	957	206576161	gcvP	KPK_0761	-	glycine dehydrogenase (decarboxylating)
750	 62.37	0	773490..774233	+	247	206578211	-	KPK_0762	-	NAD dependent epimerase/dehydratase family
751	 64.09	+1	774549..775052	-	167	206576713	scsD	KPK_0763	-	suppressor for copper-sensitivity D
752	 54.90	0	775042..775653	-	203	206577589	scsC	KPK_0764	-	suppressor for copper-sensitivity C
753	 64.22	+1	775655..777658	-	667	206576991	scsB	KPK_0765	-	suppressor for copper-sensitivity B
754	 62.50	0	777714..778073	-	119	206578733	scsA	KPK_0766	-	suppressor for copper-sensitivity A
755	 47.01	-1	778048..778164	+	38	206578174	-	KPK_0767	-	hypothetical protein
756	 56.42	0	778198..779631	-	477	206578920	bglA	KPK_0768	-	6-phospho-beta-glucosidase BglA
757	 52.24	0	779751..780485	-	244	206579585	-	KPK_0769	-	transcriptional regulator, RpiR family
758	 51.60	0	780530..780841	+	103	206576438	-	KPK_0770	-	hypothetical protein
759	 57.88	0	781005..781664	+	219	206581111	-	KPK_0771	-	channel protein, hemolysin III family
760	 62.20	0	781820..782803	-	327	206575880	ygfZ	KPK_0772	-	tRNA-modifying protein YgfZ
761	 53.18	0	783049..783315	+	88	206576457	-	KPK_0773	-	TPR repeat protein
762	 62.29	0	783296..783706	+	136	206576569	-	KPK_0774	-	hypothetical protein
763	 56.13	0	783713..784234	-	173	206579862	fldB	KPK_0775	-	flavodoxin
764	 61.09	0	784335..785231	+	298	206576348	xerD	KPK_0776	-	tyrosine recombinase XerD
765	 57.70	0	785254..785967	+	237	206576982	dsbC	KPK_0777	-	thiol:disulfide interchange protein DsbC
766	 62.28	0	785973..787706	+	577	206577627	recJ	KPK_0778	-	single-stranded-DNA-specific exonuclease RecJ
767	 56.14	0	787792..788890	+	365	206578228	prfB	KPK_0779	-	peptide chain release factor 2
768	 56.13	0	788900..790417	+	505	206578828	lysS	KPK_0780	-	lysyl-tRNA synthetase LysS
769	 61.08	0	790648..791202	-	184	206579322	idi	KPK_0781	-	isopentenyl-diphosphate delta-isomerase
770	 59.86	0	791495..792229	+	244	206580990	-	KPK_0782	-	M23 peptidase domain protein
771	 49.24	-1	792525..794165	+	546	206580411	-	KPK_0784	-	site-specific recombinase, phage integrase family
772	 46.92	-1	794134..794766	+	210	206577454	-	KPK_0785	-	hypothetical protein
773	 49.21	-1	795820..796512	+	230	206576758	-	KPK_0786	-	hypothetical protein
774	 51.16	0	796869..797300	+	143	206577920	-	KPK_0787	-	hypothetical protein
775	 53.16	0	797399..798538	+	379	206576639	-	KPK_0788	-	hypothetical protein
776	 58.60	0	799139..800527	-	462	206578627	-	KPK_0789	-	transporter, major facilitator family
777	 57.53	0	800657..801586	+	309	206577921	-	KPK_0790	-	transcriptional regulator, LysR family
778	 57.59	0	801947..802750	-	267	206579817	-	KPK_0791	-	carboxymuconolactone decarboxylase family protein
779	 59.51	0	802783..803802	-	339	206579048	-	KPK_0792	-	oxidoreductase, aldo/keto reductase family
780	 57.27	0	803823..804386	-	187	206580963	-	KPK_0793	-	flavodoxin fold family protein
781	 51.78	0	804389..804697	-	102	206580195	-	KPK_0794	-	hypothetical protein
782	 54.22	0	804836..805735	+	299	206579234	-	KPK_0795	-	transcriptional regulator, LysR family
783	 64.13	+1	805905..806180	+	91	206578503	-	KPK_0796	-	hypothetical protein
784	 60.03	0	806184..806756	-	190	206579729	-	KPK_0797	-	hypothetical protein
785	 56.80	0	806775..807068	-	97	206578974	-	KPK_0798	-	YciL domain protein
786	 59.39	0	807288..807617	+	109	206575891	arsR_1	KPK_0799	-	arsenical resistance operon repressor
787	 61.25	0	807670..808962	+	430	206577873	arsB_1	KPK_0800	-	arsenical pump membrane protein
788	 58.87	0	808972..809394	+	140	206577469	arsC_1	KPK_0801	-	arsenate reductase
789	 60.75	0	809872..811425	+	517	206578261	-	KPK_0802	-	amino acid/peptide transporter
790	 56.33	0	811609..811908	+	99	206580954	-	KPK_0803	-	hypothetical protein
791	 63.98	+1	812175..813623	-	482	206580172	mdtP	KPK_0804	-	multidrug resistance outer membrane protein MdtP
792	 65.27	+1	813620..815557	-	645	206579015	mdtO	KPK_0805	-	multidrug resistance protein MdtO
793	 64.13	+1	815570..816595	-	341	206580947	mdtN	KPK_0806	-	multidrug resistance protein MdtN
794	 56.41	0	816602..816874	-	90	206580601	-	KPK_0807	-	hypothetical protein
795	 52.81	0	817081..817311	+	76	206578495	-	KPK_0808	-	hypothetical protein
796	 51.65	0	817323..817595	+	90	206576874	-	KPK_0809	-	hypothetical protein
797	 60.63	0	817638..818879	-	413	206580312	-	KPK_0810	-	putative cyclic diguanylate phosphodiesterase
798	 61.04	0	819047..819952	-	301	206575974	fimH	KPK_0811	-	fimbrial protein FimH
799	 63.27	0	819970..820470	-	166	206576049	fimG	KPK_0812	-	fimbrial protein FimG
800	 62.31	0	820483..821010	-	175	206577173	fimF	KPK_0813	-	fimbrial protein FimF
801	 62.35	0	821021..823636	-	871	206577896	fimD	KPK_0814	-	outer membrane usher protein fimD
802	 58.87	0	823717..824421	-	234	206578956	fimC	KPK_0815	-	chaperone protein FimC
803	 60.80	0	824471..824998	-	175	206579140	-	KPK_0816	-	fimbrial protein
804	 60.29	0	825078..825626	-	182	206579227	fimA	KPK_0817	-	type-1 fimbrial protein
805	 54.19	0	826107..826715	-	202	206578497	fimE	KPK_0818	-	type 1 fimbriae regulatory protein FimE
806	 37.50	-2	826906..827025	-	39	206578435	-	KPK_0819	-	hypothetical protein
807	 51.75	0	827179..827808	-	209	206577666	fimB	KPK_0820	-	type 1 fimbriae regulatory protein FimB
808	 43.79	-1	827832..827984	-	50	206576283	-	KPK_0821	-	hypothetical protein
809	 58.91	0	828098..828226	+	42	206580966	-	KPK_0822	-	hypothetical protein
810	 58.94	0	828637..828882	-	81	206580742	-	KPK_0823	-	hypothetical protein
811	 51.57	0	829232..829774	+	180	206580002	-	KPK_0824	-	fimbrial protein
812	 43.57	-2	829836..830519	+	227	206579881	-	KPK_0825	-	gram-negative pilus assembly chaperone
813	 53.57	0	830532..833012	+	826	206579142	-	KPK_0826	-	fimbrial usher protein
814	 49.25	-1	833286..834014	+	242	206578358	-	KPK_0827	-	hypothetical protein
815	 63.23	0	834151..835110	+	319	206579816	-	KPK_0829	-	transporter, Ni2+-Co2+ transporter (NiCoT) family
816	 61.93	0	835107..835613	-	168	206576374	-	KPK_0828	-	transcriptional regulator, MarR family
817	 64.21	+1	835695..836591	+	298	206579792	-	KPK_0830	-	hypothetical protein
818	 53.81	0	836690..836899	-	69	206580688	-	KPK_0831	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.