IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
623	 60.19	0	647218..647850	+	210	206578463	-	KPK_0633	-	hypothetical protein
624	 60.47	0	647941..651183	-	1080	206580762	-	KPK_0634	-	putative sensor protein EvgS
625	 50.89	0	651188..651802	-	204	206580004	evgA	KPK_0635	-	positive transcription regulator EvgA
626	 54.92	0	652103..652468	+	121	206580800	-	KPK_0636	-	hdeB family protein
627	 53.44	0	652537..652899	-	120	206580042	-	KPK_0637	-	putative lipoprotein
628	 41.84	-2	653080..653925	-	281	206576914	-	KPK_0638	-	metallo-beta-lactamase family protein
629	 41.03	-2	654674..654907	+	77	206576153	-	KPK_0639	-	hypothetical protein
630	 43.33	-2	654879..654998	+	39	206577158	-	KPK_0640	-	hypothetical protein
631	 50.26	-1	655006..655572	+	188	206579315	-	KPK_0641	-	hypothetical protein
632	 63.12	0	655932..656438	+	168	206576071	mug	KPK_0643	-	G/U mismatch-specific DNA glycosylase
633	 55.97	0	656538..658379	-	613	206576865	rpoD	KPK_0644	-	RNA polymerase sigma factor RpoD
634	 56.64	0	658598..660343	-	581	206576100	dnaG	KPK_0645	-	DNA primase
635	 51.39	0	660455..660670	-	71	206576861	rpsU	KPK_0646	-	ribosomal protein S21
636	 62.72	0	660908..661921	+	337	206577724	gcp	KPK_0647	-	O-sialoglycoprotein endopeptidase
637	 60.51	0	661966..663573	-	535	206577796	-	KPK_0648	-	permease, cytosine/purine, uracil, thiamine, allantoin family
638	 60.36	0	663726..664343	-	205	206578541	ureG	KPK_0649	-	urease accessory protein UreG
639	 67.85	+1	664352..665026	-	224	206579370	ureF	KPK_0650	-	urease accessory protein UreF
640	 62.68	0	665028..665504	-	158	206580832	ureE	KPK_0651	-	urease accessory protein UreE
641	 62.85	0	665514..667217	-	567	206580665	ureC	KPK_0652	-	urease, alpha subunit
642	 62.31	0	667210..667530	-	106	206579658	ureB	KPK_0653	-	urease, beta subunit
643	 61.06	0	667540..667842	-	100	206580264	ureA	KPK_0654	-	urease, gamma subunit
644	 63.15	0	667852..668676	-	274	206580860	ureD	KPK_0655	-	urease accessory protein UreD
645	 53.74	0	668666..668812	+	48	206575935	-	KPK_0656	-	hypothetical protein
646	 60.52	0	669074..669691	-	205	206576612	-	KPK_0657	-	conserved hypothetical protein TIGR00023
647	 50.52	0	669799..670182	+	127	206575809	folB	KPK_0658	-	dihydroneopterin aldolase
648	 55.47	0	670380..671201	+	273	206576391	uppP	KPK_0659	-	undecaprenyl-diphosphatase
649	 64.01	+1	671213..672454	-	413	206580700	cca	KPK_0660	-	multifunctional CCA protein
650	 57.49	0	672516..673136	-	206	206576237	-	KPK_0661	-	SH3 domain protein
651	 50.83	0	673136..673255	-	39	206579740	-	KPK_0662	-	hypothetical protein
652	 62.82	0	673351..674649	+	432	206580579	-	KPK_0663	-	adenylate cyclase
653	 63.32	0	674670..677507	+	945	206576277	glnE	KPK_0664	-	glutamate-ammonia ligase adenylyltransferase
654	 61.79	0	677566..678999	+	477	206577020	hldE	KPK_0665	-	bifunctional protein HldE
655	 46.97	-1	679218..679415	+	65	206577483	glgS	KPK_0666	-	glycogen synthesis protein GlgS
656	 56.78	0	679451..679723	-	90	206578264	-	KPK_0667	-	hypothetical protein
657	 60.24	0	680101..680754	+	217	206576361	ribB	KPK_0668	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
658	 59.79	0	680816..681586	-	256	206577010	zupT	KPK_0669	-	zinc transporter ZupT
659	 61.11	0	681773..682564	+	263	206577518	-	KPK_0670	-	aromatic ring-opening dioxygenase
660	 56.93	0	682605..683765	-	386	206578265	-	KPK_0671	-	putative glutathionylspermidine synthase
661	 62.05	0	683771..684442	-	223	206579396	-	KPK_0672	-	hypothetical protein
662	 57.66	0	684610..686085	-	491	206576984	tolC	KPK_0673	-	outer membrane protein TolC
663	 53.55	0	686276..686908	+	210	206580654	-	KPK_0674	-	hydrolase, NUDIX family
664	 52.72	0	686905..687327	+	140	206576209	-	KPK_0675	-	hypothetical protein
665	 58.45	0	687352..688179	+	275	206579155	cpdA	KPK_0676	-	cyclic AMP phosphodiesterase
666	 57.47	0	688179..688754	+	191	206580061	yqiA	KPK_0677	-	esterase YqiA
667	 58.54	0	688785..690680	+	631	206578624	parE	KPK_0678	-	DNA topoisomerase IV, B subunit
668	 60.32	0	690753..691067	-	104	206579167	-	KPK_0679	-	quinol monooxygenase YgiN
669	 55.15	0	691149..691730	-	193	206577064	mdaB	KPK_0680	-	modulator of drug activity B
670	 63.70	+1	691837..693186	-	449	206577692	qseC	KPK_0681	-	sensor protein QseC
671	 61.21	0	693183..693842	-	219	206577736	qseB	KPK_0682	-	transcriptional regulatory protein QseB
672	 57.35	0	693992..694399	+	135	206578386	-	KPK_0683	-	conserved hypothetical protein TIGR00156
673	 58.05	0	694477..695346	+	289	206579471	-	KPK_0684	-	transcriptional regulator, AraC family
674	 58.79	0	695468..697726	+	752	206579415	parC	KPK_0685	-	DNA topoisomerase IV, A subunit
675	 53.52	0	697918..698655	+	245	206581051	plsC	KPK_0686	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
676	 63.77	+1	698739..700151	+	470	206580326	sufI	KPK_0687	-	protein SufI
677	 58.40	0	700185..702458	+	757	206576532	-	KPK_0688	-	radical SAM domain protein
678	 57.97	0	702545..703372	-	275	206575774	dkgA	KPK_0689	-	2,5-didehydrogluconate reductase A
679	 58.59	0	703518..704681	-	387	206578100	yqhD	KPK_0690	-	alcohol dehydrogenase yqhD
680	 55.25	0	704788..705777	+	329	206577287	-	KPK_0691	-	transcriptional regulator, AraC family
681	 59.55	0	705827..706486	-	219	206576964	-	KPK_0692	-	hypothetical protein
682	 59.60	0	706618..707805	-	395	206578946	metC	KPK_0693	-	cystathionine beta-lyase
683	 59.70	0	708056..708787	+	243	206580290	exbB	KPK_0694	-	TonB-system energizer ExbB
684	 53.29	0	708794..709219	+	141	206580809	exbD	KPK_0695	-	TonB system transport protein ExbD
685	 52.12	0	709360..709854	+	164	206577998	-	KPK_0696	-	hypothetical protein
686	 58.11	0	709977..710864	+	295	206575860	-	KPK_0697	-	dienelactone hydrolase family protein
687	 55.21	0	710943..711230	+	95	206578941	-	KPK_0698	-	hypothetical protein
688	 60.90	0	711303..712169	-	288	206580864	-	KPK_0699	-	glutathione S-transferase domain protein
689	 61.32	0	712217..712777	-	186	206576662	-	KPK_0700	-	hypothetical protein
690	 41.67	-2	712777..712920	+	47	206576201	-	KPK_0701	-	hypothetical protein
691	 56.86	0	712997..714862	+	621	206575912	gsp	KPK_0702	-	bifunctional glutathionylspermidine synthetase/amidase
692	 60.07	0	715008..716189	+	393	206577140	-	KPK_0703	-	aminotransferase, classes I and II
693	 41.80	-2	716386..716574	-	62	206578523	-	KPK_0704	-	hypothetical protein
694	 53.33	0	716774..717118	-	114	206579047	-	KPK_0705	-	hypothetical protein
695	 62.19	0	717205..717807	-	200	206581048	-	KPK_0706	-	oxidoreductase, short chain dehydrogenase/reductase family
696	 66.12	+1	717905..718816	+	303	206580258	-	KPK_0707	-	transcriptional regulator, LysR family
697	 63.10	0	718817..719965	-	382	206577860	-	KPK_0708	-	putative cystathionine beta-lyase
698	 60.13	0	719977..721353	-	458	206578606	-	KPK_0709	-	putative cystathionine beta-synthase
699	 56.16	0	722215..722928	-	237	206579350	-	KPK_0711	-	hypothetical protein
700	 59.65	0	723348..725486	+	712	206580796	speC	KPK_0712	-	ornithine decarboxylase, constitutive
701	 56.30	0	725530..726783	-	417	206576052	nupG	KPK_0713	-	nucleoside permease NupG
702	 56.05	0	726975..728057	-	360	206578787	mltC	KPK_0714	-	membrane-bound lytic murein transglycosylase C
703	 52.54	0	728106..728381	-	91	206576508	yggX	KPK_0715	-	protein YggX
704	 58.17	0	728410..729468	-	352	206579997	mutY	KPK_0716	-	A/G-specific adenine glycosylase
705	 55.56	0	729605..730324	+	239	206576290	trmB	KPK_0717	-	tRNA (guanine-N(7)-)-methyltransferase
706	 54.13	0	730324..730650	+	108	206577066	-	KPK_0718	-	hypothetical protein
707	 58.61	0	730701..731420	+	239	206577480	-	KPK_0719	-	hypothetical protein
708	 60.42	0	731461..732597	-	378	206578289	-	KPK_0720	-	putative oxygen-independent coproporphyrinogen III oxidase
709	 60.61	0	732590..733183	-	197	206578648	rdgB	KPK_0721	-	non-canonical purine NTP pyrophosphatase RdgB
710	 57.04	0	733196..733486	-	96	206579395	-	KPK_0722	-	conserved hypothetical protein TIGR00251
711	 57.50	0	733483..734049	-	188	206578029	-	KPK_0723	-	YGGT family protein
712	 57.55	0	734070..734771	-	233	206579525	-	KPK_0724	-	alanine racemase family
713	 60.45	0	734788..735768	+	326	206578904	-	KPK_0725	-	twitching motility family protein
714	 48.01	-1	736117..736770	+	217	206577986	-	KPK_0726	-	transcriptional regulator, LuxR family
715	 58.03	0	736823..737239	-	138	206577149	-	KPK_0727	-	conserved hypothetical protein TIGR00250
716	 55.50	0	737239..737802	-	187	206578334	-	KPK_0728	-	hypothetical protein
717	 56.89	0	737977..738927	-	316	206577717	gshB	KPK_0729	-	glutathione synthase
718	 56.83	0	738948..739679	-	243	206576729	rsmE	KPK_0730	-	ribosomal RNA small subunit methyltransferase RsmE
719	 57.06	0	739771..740478	-	235	206576144	endA	KPK_0731	-	endonuclease-1
720	 60.08	0	740573..741073	-	166	206578701	sprT	KPK_0732	-	protein SprT
721	 58.06	0	741151..742545	-	464	206580389	galP	KPK_0733	-	galactose-proton symporter
722	 57.66	0	742924..744078	-	384	206577838	metK	KPK_0734	-	S-adenosylmethionine synthetase
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.