IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
532	 47.41	-1	556157..556291	-	44	206578527	-	KPK_0541	-	hypothetical protein
533	 55.36	0	556302..557645	-	447	206579250	argG	KPK_0542	-	argininosuccinate synthase
534	 51.66	0	558238..558690	+	150	206577891	-	KPK_0544	-	hypothetical protein
535	 56.25	0	558718..560205	+	495	206577127	nusA	KPK_0545	-	transcription termination factor NusA
536	 55.15	0	560230..562920	+	896	206576699	infB	KPK_0546	-	translation initiation factor IF-2
537	 54.48	0	563023..563424	+	133	206575945	rbfA	KPK_0547	-	ribosome-binding factor A
538	 60.32	0	563424..564368	+	314	206579974	truB	KPK_0548	-	tRNA pseudouridine synthase B
539	 51.48	0	564517..564786	+	89	206580210	rpsO	KPK_0549	-	ribosomal protein S15
540	 45.07	-1	564858..565070	-	70	206579466	-	KPK_0550	-	hypothetical protein
541	 57.02	0	565029..567164	+	711	206579040	pnp	KPK_0551	-	polyribonucleotide nucleotidyltransferase
542	 50.40	-1	567273..568157	+	294	206577742	nlpI	KPK_0552	-	lipoprotein NlpI
543	 59.01	0	568335..570266	+	643	206579682	deaD	KPK_0553	-	cold-shock DEAD box protein A
544	 58.63	0	570410..571654	+	414	206575828	mtr	KPK_0554	-	tryptophan-specific transport protein
545	 60.62	0	571699..572706	-	335	206579916	-	KPK_0555	-	monooxygenase, luciferase family
546	 58.02	0	572850..573728	-	292	206580764	-	KPK_0556	-	peptidase, U32 family
547	 60.04	0	573734..574729	-	331	206578682	-	KPK_0557	-	peptidase, U32 family
548	 57.52	0	574951..575475	+	174	206578917	-	KPK_0558	-	SCP-2 sterol transfer family protein
549	 60.91	0	575469..575972	+	167	206578216	-	KPK_0560	-	acetyltransferase, GNAT family
550	 56.84	0	575959..576243	-	94	206577613	-	KPK_0559	-	GIY-YIG catalytic domain protein
551	 60.36	0	576299..576742	+	147	206576407	-	KPK_0562	-	hypothetical protein
552	 59.40	0	576704..577240	-	178	206576344	-	KPK_0561	-	intracellular protease, PfpI family
553	 62.35	0	577369..578016	+	215	206580540	-	KPK_0563	-	NAD-binding domain 4 protein
554	 63.02	0	578092..579132	+	346	206580161	-	KPK_0564	-	putative permease
555	 60.42	0	579251..579826	-	191	206577145	-	KPK_0565	-	phospholipid-binding domain protein
556	 55.84	0	579836..580426	-	196	206576712	diaA	KPK_0566	-	DnaA initiator-associating protein DiaA
557	 59.17	0	580452..580838	-	128	206577895	-	KPK_0567	-	conserved hypothetical protein TIGR00252
558	 61.36	0	580796..582904	-	702	206577167	-	KPK_0568	-	putative lipoprotein
559	 58.80	0	582968..583831	+	287	206579752	-	KPK_0569	-	tetrapyrrole methylase family protein
560	 59.16	0	584032..585603	-	523	206578998	garD	KPK_0570	-	galactarate dehydratase
561	 36.59	-2	585978..586100	+	40	206580412	-	KPK_0571	-	hypothetical protein
562	 61.22	0	586127..586897	+	256	206579643	garL	KPK_0572	-	2-dehydro-3-deoxyglucarate aldolase
563	 57.58	0	586924..587814	+	296	206576493	garR	KPK_0573	-	2-hydroxy-3-oxopropionate reductase
564	 61.43	0	587879..589024	+	381	206579812	garK	KPK_0574	-	glycerate kinase
565	 52.26	0	590133..590597	-	154	206578296	-	KPK_0575	-	putative lipoprotein
566	 50.12	-1	590909..591319	+	136	206575966	-	KPK_0576	-	putative lipoprotein
567	 53.57	0	591393..591560	-	55	206579642	-	KPK_0577	-	hypothetical protein
568	 58.12	0	591585..592286	-	233	206577705	-	KPK_0578	-	pirin family protein
569	 59.31	0	592391..593287	+	298	206578573	-	KPK_0579	-	transcriptional regulator, LysR family
570	 55.28	0	593329..593697	-	122	206579282	-	KPK_0580	-	putative inner membrane protein YhaH
571	 55.22	0	593824..594810	-	328	206577040	-	KPK_0581	-	hypothetical protein
572	 52.93	0	594885..595277	-	130	206580478	-	KPK_0582	-	putative inner membrane protein YqjF
573	 62.63	0	595616..595912	-	98	206576274	-	KPK_0583	-	hypothetical protein
574	 61.40	0	595909..596307	-	132	206579476	-	KPK_0584	-	hypothetical protein
575	 56.54	0	596310..596615	-	101	206577120	-	KPK_0585	-	hypothetical protein
576	 50.14	-1	596661..597029	-	122	206578005	-	KPK_0586	-	hypothetical protein
577	 62.50	0	597179..597562	-	127	206576887	-	KPK_0587	-	hypothetical protein
578	 55.66	0	597565..598227	-	220	206576646	-	KPK_0588	-	hypothetical protein
579	 52.77	0	598570..599346	-	258	206581118	exuR	KPK_0589	-	Exu regulon transcriptional regulator
580	 60.29	0	599474..600775	-	433	206576088	exuT	KPK_0590	-	hexuronate transporter
581	 56.26	0	601258..602670	+	470	206579202	uxaC	KPK_0591	-	glucuronate isomerase
582	 57.93	0	602689..604176	+	495	206580302	uxaA	KPK_0592	-	altronate dehydratase
583	 57.66	0	604306..604860	+	184	206578000	-	KPK_0593	-	hypothetical protein
584	 60.34	0	604876..606123	-	415	206580821	sstT	KPK_0594	-	sodium:serine/threonine symporter
585	 58.02	0	606355..607326	-	323	206577538	alx	KPK_0595	-	protein Alx
586	 55.86	0	607598..608587	-	329	206578148	-	KPK_0596	-	oxidoreductase, NAD binding
587	 54.29	0	608661..609161	-	166	206578097	-	KPK_0597	-	hypothetical protein
588	 52.37	0	609240..610883	-	547	206578575	-	KPK_0598	-	putative xylan 1,4-beta-xylosidase
589	 47.98	-1	611013..611879	-	288	206579126	-	KPK_0599	-	transcriptional regulator, AraC family
590	 49.52	-1	611988..613328	+	446	206580376	-	KPK_0600	-	sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family
591	 58.27	0	613405..614535	+	376	206580995	-	KPK_0601	-	methyltransferase family protein
592	 62.96	0	614761..616782	-	673	206576208	fadH	KPK_0602	-	2,4-dienoyl-CoA reductase
593	 63.84	+1	617074..618666	-	530	206578367	lsrK	KPK_0603	-	autoinducer-2 kinase
594	 64.30	+1	618704..619675	-	323	206579991	lsrR	KPK_0604	-	transcriptional repressor LsrR
595	 62.84	0	619894..621381	+	495	206576829	lsrA	KPK_0605	-	autoinducer-2 ABC transporter, ATP-binding protein LsrA
596	 63.77	+1	621378..622412	+	344	206576370	lsrC	KPK_0606	-	autoinducer-2 ABC transporter, permease protein LsrC
597	 62.49	0	622413..623417	+	334	206578381	lsrD	KPK_0607	-	autoinducer-2 ABC transporter, permease protein LsrD
598	 59.57	0	623414..624427	+	337	206579249	lsrB	KPK_0608	-	autoinducer-2 ABC transporter, periplasmic autoinducer-2-binding protein LsrB
599	 59.46	0	624439..625326	+	295	206578532	lsrF	KPK_0609	-	lsrF protein
600	 55.22	0	625323..625619	+	98	206580778	lsrG	KPK_0610	-	lsrG protein
601	 59.64	0	625667..627046	-	459	206578619	ygjG	KPK_0611	-	putrescine aminotransferase
602	 60.90	0	627304..627858	-	184	206577635	-	KPK_0612	-	transcriptional regulator, PadR family
603	 61.78	0	628096..628872	+	258	206578418	-	KPK_0613	-	siderophore-interacting protein
604	 62.39	0	628961..629077	-	38	206577624	-	KPK_0614	-	hypothetical protein
605	 64.97	+1	629088..630737	-	549	206576859	-	KPK_0615	-	dihydroxyacetone kinase
606	 62.66	0	630813..632234	-	473	206576124	dhaM	KPK_0616	-	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM
607	 61.14	0	632245..632877	-	210	206579837	dhaL	KPK_0617	-	dihydroxyacetone kinase, ADP-binding subunit
608	 61.16	0	632888..633958	-	356	206579296	dhaK	KPK_0618	-	dihydroxyacetone kinase, DhaK subunit
609	 50.39	-1	634225..634353	+	42	206579004	-	KPK_0619	-	hypothetical protein
610	 60.93	0	634568..635665	+	365	206577807	-	KPK_0620	-	glycerol dehydrogenase
611	 61.32	0	635767..637692	+	641	206579116	dhaR	KPK_0622	-	PTS-dependent dihydroxyacetone kinase operon regulatory protein
612	 63.84	+1	637670..638200	-	176	206579020	-	KPK_0621	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
613	 66.67	+1	638201..638554	-	117	206578150	dhaG	KPK_0623	-	glycerol dehydratase reactivation factor, small subunit
614	 61.25	0	638575..639738	-	387	206581077	dhaT	KPK_0624	-	1,3-propanediol dehydrogenase
615	 53.47	0	639760..640191	-	143	206580189	-	KPK_0625	-	hypothetical protein
616	 60.97	0	640602..642269	+	555	206579582	dhaB	KPK_0626	-	glycerol dehydratase, large subunit
617	 60.17	0	642282..642866	+	194	206579352	dhaC	KPK_0627	-	glycerol dehydratase, medium subunit
618	 61.50	0	642869..643294	+	141	206577992	dhaE	KPK_0628	-	glycerol dehydratase, small subunit
619	 63.54	0	643307..645130	+	607	206577418	dhaF	KPK_0629	-	glycerol dehydratase reactivation factor, large subunit
620	 61.57	0	645184..645987	+	267	206576489	-	KPK_0630	-	glycerol uptake facilitator protein GlpF homolog
621	 54.25	0	646043..646348	-	101	206576232	-	KPK_0631	-	hypothetical protein
622	 51.56	0	646375..646950	-	191	206579189	-	KPK_0632	-	putative HdeD protein
623	 60.19	0	647218..647850	+	210	206578463	-	KPK_0633	-	hypothetical protein
624	 60.47	0	647941..651183	-	1080	206580762	-	KPK_0634	-	putative sensor protein EvgS
625	 50.89	0	651188..651802	-	204	206580004	evgA	KPK_0635	-	positive transcription regulator EvgA
626	 54.92	0	652103..652468	+	121	206580800	-	KPK_0636	-	hdeB family protein
627	 53.44	0	652537..652899	-	120	206580042	-	KPK_0637	-	putative lipoprotein
628	 41.84	-2	653080..653925	-	281	206576914	-	KPK_0638	-	metallo-beta-lactamase family protein
629	 41.03	-2	654674..654907	+	77	206576153	-	KPK_0639	-	hypothetical protein
630	 43.33	-2	654879..654998	+	39	206577158	-	KPK_0640	-	hypothetical protein
631	 50.26	-1	655006..655572	+	188	206579315	-	KPK_0641	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.