IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3957	 56.47	0	4094522..4095766	+	414	206579902	-	KPK_4038	-	transporter, small conductance mechanosensitive ion channel (MscS) family
3958	 63.10	0	4095769..4096749	-	326	206576979	-	KPK_4039	-	sugar binding transcriptional regulator, LacI family
3959	 59.47	0	4096983..4097399	+	138	206576314	-	KPK_4040	-	putative lipoprotein
3960	 64.67	+1	4097419..4098570	-	383	206578152	-	KPK_4041	-	oxidoreductase family protein
3961	 62.66	0	4098572..4099594	-	340	206579414	-	KPK_4042	-	AP endonuclease, family 2
3962	 59.95	0	4099611..4100816	-	401	206579236	-	KPK_4043	-	nucleoside transporter
3963	 59.40	0	4101004..4102380	-	458	206579737	-	KPK_4044	-	amino acid permease family protein
3964	 58.75	0	4102487..4104697	-	736	206580163	fcuA	KPK_4045	-	ferrichrome receptor FcuA
3965	 56.69	0	4104745..4105827	-	360	206580929	-	KPK_4046	-	putative lipoprotein
3966	 62.83	0	4106225..4107709	-	494	206575937	-	KPK_4047	-	putative phenylacetaldehyde dehydrogenase
3967	 58.91	0	4107869..4109170	+	433	206577415	-	KPK_4048	-	FAD-dependent oxidoreductase
3968	 62.30	0	4109184..4109549	+	121	206579630	-	KPK_4049	-	hypothetical protein
3969	 62.73	0	4109989..4111488	+	499	206577752	-	KPK_4050	-	amino acid permease family protein
3970	 61.28	0	4111466..4112059	+	197	206578072	-	KPK_4051	-	hypothetical protein
3971	 63.17	0	4112066..4113181	-	371	206576080	-	KPK_4052	-	histone deacetylase family protein
3972	 66.24	+1	4113198..4114370	-	390	206580043	-	KPK_4053	-	transporter, major facilitator family
3973	 54.39	0	4114487..4115170	-	227	206580792	moaR	KPK_4054	-	monoamine regulon transcriptional regulator
3974	 39.47	-2	4115409..4115522	+	37	206578483	-	KPK_4055	-	hypothetical protein
3975	 68.21	+1	4115680..4116456	+	258	206579229	-	KPK_4056	-	oxidoreductase, short chain dehydrogenase/reductase family
3976	 59.97	0	4116482..4117273	+	263	206578829	moaF	KPK_4057	-	MoaF protein
3977	 61.22	0	4117941..4118894	-	317	206578106	-	KPK_4058	-	oxidoreductase, aldo/keto reductase family
3978	 56.76	0	4119022..4119798	-	258	206578400	-	KPK_4059	-	amino acid ABC transporter, periplasmic amino acid-binding protein
3979	 59.29	0	4119818..4120996	-	392	206576251	-	KPK_4060	-	amidohydrolase family protein
3980	 59.18	0	4121231..4121818	+	195	206576546	-	KPK_4061	-	putative lipoprotein
3981	 63.60	0	4121883..4122338	-	151	206579847	-	KPK_4062	-	hypothetical protein
3982	 52.56	0	4122507..4122896	-	129	206580731	-	KPK_4063	-	hypothetical protein
3983	 47.50	-1	4122957..4123076	+	39	206578637	-	KPK_4064	-	hypothetical protein
3984	 59.70	0	4123168..4124286	+	372	206577609	-	KPK_4065	-	ABC transporter, iron chelate uptake transporter (FeCT) family, periplasmic substrate-binding protein
3985	 63.90	+1	4124293..4125375	+	360	206578137	-	KPK_4066	-	ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein
3986	 64.54	+1	4125372..4126169	+	265	206577540	-	KPK_4067	-	ABC transporter, iron chelate uptake transporter (FeCT) family, ATP-binding protein
3987	 61.24	0	4126210..4127352	-	380	206575960	-	KPK_4068	-	auxiliary transport protein, membrane fusion protein (MFP) family
3988	 54.49	0	4127352..4127696	-	114	206575956	-	KPK_4069	-	hypothetical protein
3989	 52.47	0	4127831..4128598	-	255	206577843	-	KPK_4070	-	hypothetical protein
3990	 67.64	+1	4128711..4129634	+	307	206579772	scrK	KPK_4071	-	fructokinase
3991	 59.29	0	4129801..4131318	+	505	206579016	scrY	KPK_4072	-	sucrose porin ScrY
3992	 60.47	0	4131423..4132793	+	456	206579027	scrA	KPK_4073	-	PTS system sucrose-specific EIIBC component
3993	 65.38	+1	4132793..4134193	+	466	206580989	scrB	KPK_4074	-	sucrose-6-phosphate hydrolase
3994	 63.28	0	4134223..4135227	+	334	206580237	scrR	KPK_4075	-	sucrose operon repressor
3995	 67.29	+1	4135243..4135884	-	213	206576706	-	KPK_4076	-	hypothetical protein
3996	 59.43	0	4136070..4137092	-	340	206576711	-	KPK_4077	-	sugar ABC transporter, permease protein
3997	 56.16	0	4137112..4138596	-	494	206578846	-	KPK_4078	-	sugar ABC transporter, ATP-binding protein
3998	 54.76	0	4138629..4139552	-	307	206577522	-	KPK_4079	-	sugar ABC transporter, periplasmic substrate-binding protein
3999	 65.31	+1	4139964..4140998	-	344	206578293	-	KPK_4080	-	putative transcriptional regulator
4000	 66.37	+1	4141085..4142092	+	335	206576225	idhA	KPK_4081	-	inositol 2-dehydrogenase
4001	 56.41	0	4142097..4142213	+	38	206577000	-	KPK_4082	-	hypothetical protein
4002	 65.31	+1	4142336..4143367	-	343	206576550	-	KPK_4083	-	oxidoreductase, NAD binding
4003	 61.64	0	4143377..4144549	-	390	206580024	-	KPK_4084	-	oxidoreductase, NAD binding
4004	 63.95	+1	4144546..4145466	-	306	206580198	mocC	KPK_4085	-	rhizopine catabolism protein MocC
4005	 45.42	-1	4145545..4145784	+	79	206579636	-	KPK_4087	-	hypothetical protein
4006	 32.54	-2	4145773..4145898	-	41	206580976	-	KPK_4086	-	hypothetical protein
4007	 56.77	0	4146000..4146464	+	154	206576319	-	KPK_4088	-	hypothetical protein
4008	 55.86	0	4147098..4148615	-	505	206580188	-	KPK_4090	-	lysyl-tRNA synthetase LysS homolog
4009	 62.87	0	4148947..4150422	-	491	206578574	-	KPK_4091	-	amino acid/peptide transporter
4010	 52.89	0	4150483..4152630	-	715	206579251	-	KPK_4092	-	putative lysine decarboxylase, constitutive
4011	 54.31	0	4152713..4154047	-	444	206577633	-	KPK_4093	-	putative cadaverine/lysine antiporter
4012	 56.36	0	4154413..4155993	-	526	206578436	cadC	KPK_4094	-	transcriptional activator CadC
4013	 52.38	0	4156287..4156559	-	90	206576063	-	KPK_4095	-	hypothetical protein
4014	 59.39	0	4156660..4157580	-	306	206576886	lpxL_2	KPK_4096	-	lipid A biosynthesis lauroyl acyltransferase
4015	 49.37	-1	4158091..4158957	+	288	206577212	-	KPK_4097	-	acetyltransferase, GNAT family
4016	 56.63	0	4158980..4160005	-	341	206579608	-	KPK_4098	-	fimbrial protein
4017	 62.97	0	4160007..4162412	-	801	206575765	-	KPK_4099	-	fimbrial usher protein
4018	 58.05	0	4162453..4163148	-	231	206580420	-	KPK_4100	-	gram-negative pili assembly chaperone
4019	 55.97	0	4163207..4163767	-	186	206577328	-	KPK_4101	-	fimbrial protein
4020	 50.23	-1	4164240..4164902	+	220	206576518	-	KPK_4102	-	transcriptional regulator, LuxR family
4021	 53.27	0	4164880..4165185	+	101	206578052	-	KPK_4103	-	hypothetical protein
4022	 61.84	0	4165237..4166541	-	434	206577263	-	KPK_4104	-	putative citrate (Si)-synthase
4023	 53.57	0	4166786..4166953	+	55	206579601	-	KPK_4105	-	hypothetical protein
4024	 54.39	0	4167052..4167222	+	56	206578793	-	KPK_4106	-	hypothetical protein
4025	 50.50	0	4167301..4167702	-	133	206579538	uraH	KPK_4107	-	hydroxyisourate hydrolase
4026	 37.47	-2	4168076..4168486	-	136	206578508	-	KPK_4108	-	hypothetical protein
4027	 55.91	0	4169327..4169512	-	61	206578437	-	KPK_4109	-	hypothetical protein
4028	 58.93	0	4170369..4179875	-	3168	206577547	-	KPK_4110	-	filamentous haemagglutinin family protein
4029	 54.78	0	4179888..4181519	-	543	206576167	-	KPK_4111	-	haemolysin secretion/activation protein, ShlB/FhaC/HecB family
4030	 56.39	0	4182049..4182369	-	106	206580842	-	KPK_4112	-	hypothetical protein
4031	 58.75	0	4182369..4182608	-	79	206580754	-	KPK_4113	-	hypothetical protein
4032	 46.72	-1	4182675..4183421	-	248	206580612	-	KPK_4114	-	hypothetical protein
4033	 46.92	-1	4183434..4185965	-	843	206580006	-	KPK_4115	-	hypothetical protein
4034	 57.33	0	4185980..4187275	-	431	206578695	-	KPK_4116	-	hypothetical protein
4035	 54.25	0	4187277..4187864	-	195	206577923	-	KPK_4117	-	hypothetical protein
4036	 54.91	0	4187857..4189089	-	410	206577095	-	KPK_4118	-	hypothetical protein
4037	 55.46	0	4189097..4189453	-	118	206580774	-	KPK_4119	-	hypothetical protein
4038	 48.10	-1	4189509..4190429	-	306	206580575	ant	KPK_4120	-	antirepressor protein Ant
4039	 47.22	-1	4190749..4191000	+	83	206579806	mnt	KPK_4121	-	regulatory protein Mnt
4040	 42.65	-2	4191001..4191204	+	67	206577041	-	KPK_4122	-	hypothetical protein
4041	 39.89	-2	4191234..4191584	-	116	206576149	-	KPK_4123	-	hypothetical protein
4042	 49.15	-1	4191587..4192174	-	195	206578707	-	KPK_4124	-	hypothetical protein
4043	 43.86	-1	4192176..4193030	-	284	206579868	-	KPK_4125	-	hypothetical protein
4044	 45.42	-1	4193027..4193332	-	101	206579452	-	KPK_4126	-	hypothetical protein
4045	 48.40	-1	4193334..4194176	-	280	206576220	-	KPK_4127	-	hypothetical protein
4046	 50.83	0	4194180..4196105	-	641	206576313	-	KPK_4128	-	transglycosylase SLT domain protein
4047	 52.98	0	4196086..4196253	-	55	206578141	-	KPK_4129	-	hypothetical protein
4048	 55.35	0	4196310..4196786	-	158	206579191	-	KPK_4130	-	hypothetical protein
4049	 54.95	0	4196848..4197291	-	147	206579604	-	KPK_4131	-	hypothetical protein
4050	 56.55	0	4197291..4198772	-	493	206578788	-	KPK_4132	-	hypothetical protein
4051	 53.44	0	4198776..4199327	-	183	206578795	-	KPK_4133	-	hypothetical protein
4052	 52.85	0	4199309..4199677	-	122	206580514	-	KPK_4134	-	hypothetical protein
4053	 54.61	0	4199674..4200237	-	187	206579928	-	KPK_4135	-	hypothetical protein
4054	 52.03	0	4200240..4200683	-	147	206580942	-	KPK_4136	-	hypothetical protein
4055	 55.05	0	4200683..4201009	-	108	206576245	-	KPK_4137	-	hypothetical protein
4056	 56.74	0	4201011..4202048	-	345	206577030	-	KPK_4138	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.