IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3671	 53.26	0	3783043..3783303	+	86	206580458	-	KPK_3737	-	hypothetical protein
3672	 63.57	0	3783412..3784380	-	322	206581081	-	KPK_3738	-	glycosyl transferase family protein
3673	 59.85	0	3784410..3786566	-	718	206578948	-	KPK_3739	-	putative ATP-dependent helicase DinG
3674	 63.50	0	3786754..3788109	-	451	206579391	-	KPK_3740	-	putative ATP-dependent RNA helicase RhlE
3675	 56.00	0	3788195..3788344	+	49	206578028	-	KPK_3742	-	hypothetical protein
3676	 59.62	0	3788325..3789317	-	330	206577284	-	KPK_3741	-	transketolase domain protein
3677	 59.57	0	3789317..3790162	-	281	206575714	-	KPK_3743	-	transketolase family protein
3678	 60.53	0	3790176..3790925	-	249	206580408	-	KPK_3744	-	oxidoreductase, short chain dehydrogenase/reductase family protein
3679	 49.85	-1	3790976..3792307	-	443	206581031	-	KPK_3745	-	transporter, major facilitator family
3680	 54.00	0	3792727..3793650	+	307	206578907	-	KPK_3746	-	transcriptional regulator, LysR family
3681	 57.42	0	3793724..3794383	+	219	206579327	-	KPK_3747	-	transcriptional regulator, TetR family
3682	 62.75	0	3794383..3795378	+	331	206578786	-	KPK_3748	-	auxiliary transport protein, membrane fusion protein (MFP) family
3683	 61.15	0	3795371..3797110	+	579	206577603	-	KPK_3749	-	ABC transporter, ATP-binding protein
3684	 59.08	0	3797100..3798233	+	377	206576959	-	KPK_3750	-	ABC-2 type transporter, permease protein
3685	 56.37	0	3798363..3799469	+	368	206580571	-	KPK_3752	-	ABC-2 type transporter, permease protein
3686	 59.61	0	3799431..3799841	-	136	206576358	-	KPK_3751	-	hypothetical protein
3687	 58.14	0	3799973..3800734	+	253	206579947	-	KPK_3753	-	endonuclease/exonuclease/phosphatase family protein
3688	 61.37	0	3800731..3801975	+	414	206579418	-	KPK_3754	-	putative cardiolipin synthetase
3689	 57.97	0	3801972..3802937	+	321	206578193	-	KPK_3755	-	hypothetical protein
3690	 54.90	0	3803705..3804715	+	336	206580366	-	KPK_3756	-	transposase, IS110 family
3691	 57.02	0	3805104..3805808	-	234	206581124	-	KPK_3757	-	inner membrane protein YbhL
3692	 62.91	0	3805854..3806306	-	150	206575784	moaE	KPK_3758	-	molybdopterin converting factor, subunit 2
3693	 67.07	+1	3806308..3806556	-	82	206576434	moaD	KPK_3759	-	molybdopterin converting factor, subunit 1
3694	 59.10	0	3806549..3807037	-	162	206578241	moaC	KPK_3760	-	molybdenum cofactor biosynthesis protein C
3695	 62.18	0	3807041..3807553	-	170	206578010	moaB	KPK_3761	-	molybdenum cofactor biosynthesis protein B
3696	 58.38	0	3807577..3808566	-	329	206579720	moaA	KPK_3762	-	molybdenum cofactor biosynthesis protein A
3697	 61.15	0	3808901..3809806	+	301	206577497	-	KPK_3763	-	hypothetical protein
3698	 54.24	0	3809910..3811550	+	546	206576807	-	KPK_3764	-	membrane-associated sulfatase
3699	 56.85	0	3811550..3812221	+	223	206580423	basR	KPK_3765	-	transcriptional regulatory protein BasR
3700	 62.57	0	3812225..3813322	+	365	206580605	basS	KPK_3766	-	sensor protein BasS
3701	 52.98	0	3813274..3813441	+	55	206579879	-	KPK_3767	-	hypothetical protein
3702	 60.88	0	3813573..3815594	-	673	206577462	uvrB	KPK_3768	-	excinuclease ABC, B subunit
3703	 56.21	0	3816154..3816306	-	50	206577042	-	KPK_3769	-	hypothetical protein
3704	 61.83	0	3816969..3817691	-	240	206579449	bioD	KPK_3770	-	dethiobiotin synthase
3705	 66.80	+1	3817684..3818439	-	251	206578655	bioC	KPK_3771	-	biotin biosynthesis protein BioC
3706	 66.15	+1	3818423..3819580	-	385	206580602	bioF	KPK_3772	-	8-amino-7-oxononanoate synthase
3707	 58.41	0	3819577..3820617	-	346	206579832	bioB	KPK_3773	-	biotin synthase
3708	 62.71	0	3820703..3821992	+	429	206576937	bioA	KPK_3774	-	adenosylmethionine-8-amino-7-oxononanoate transaminase
3709	 59.96	0	3822063..3822539	+	158	206580554	-	KPK_3775	-	phosphatidylethanolamine-binding protein
3710	 59.87	0	3822640..3824022	-	460	206576776	-	KPK_3776	-	amino acid permease family protein
3711	 63.72	+1	3824121..3825647	-	508	206576058	hutH	KPK_3777	-	histidine ammonia-lyase
3712	 60.86	0	3825644..3827332	-	562	206578292	hutU	KPK_3778	-	urocanate hydratase
3713	 59.37	0	3827475..3828200	-	241	206577965	hutC	KPK_3779	-	histidine utilization repressor
3714	 65.73	+1	3828262..3829218	-	318	206579334	hutG	KPK_3780	-	formimidoylglutamase
3715	 63.38	0	3829215..3830432	-	405	206578478	hutI	KPK_3781	-	imidazolonepropionase
3716	 59.66	0	3830689..3831972	+	427	206580577	-	KPK_3782	-	pectinesterase
3717	 59.11	0	3832260..3834947	-	895	206580301	-	KPK_3783	-	cation transporting ATPase, E1-E2 family
3718	 50.23	-1	3834999..3835430	-	143	206577501	-	KPK_3784	-	universal stress family protein
3719	 59.76	0	3835964..3837049	+	361	206576811	-	KPK_3785	-	efflux transporter, RND family, MFP subunit
3720	 58.74	0	3837050..3840115	+	1021	206578198	-	KPK_3786	-	RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
3721	 50.83	0	3840112..3841077	+	321	206579101	-	KPK_3787	-	hypothetical protein
3722	 47.93	-1	3841094..3841600	-	168	206576995	-	KPK_3788	-	hypothetical protein
3723	 48.89	-1	3841620..3841754	+	44	206577869	-	KPK_3789	-	hypothetical protein
3724	 44.44	-1	3841904..3842083	+	59	206580565	-	KPK_3790	-	hypothetical protein
3725	 40.74	-2	3842335..3842550	+	71	206575745	-	KPK_3791	-	hypothetical protein
3726	 43.42	-2	3842633..3843187	+	184	206579313	-	KPK_3792	-	transcriptional regulator, LuxR family
3727	 56.87	0	3843225..3843959	-	244	206580242	mlrA	KPK_3793	-	transcriptional regulator MlrA
3728	 51.49	0	3844114..3845325	-	403	206577527	-	KPK_3794	-	BLUF domain/cyclic diguanylate phosphodiesterase (EAL) domain protein
3729	 50.81	0	3845655..3845900	+	81	206578132	-	KPK_3795	-	hypothetical protein
3730	 54.25	0	3846026..3846331	+	101	206579730	-	KPK_3796	-	hypothetical protein
3731	 51.69	0	3846383..3846649	+	88	206578881	-	KPK_3797	-	hypothetical protein
3732	 59.24	0	3846757..3847752	-	331	206579459	pgl	KPK_3798	-	6-phosphogluconolactonase
3733	 60.07	0	3847981..3848799	+	272	206580456	ybhA	KPK_3799	-	phosphatase YbhA
3734	 63.46	0	3848800..3849858	-	352	206581065	modC	KPK_3800	-	molybdate ABC transporter, ATP-binding protein
3735	 62.90	0	3849861..3850550	-	229	206575811	modB	KPK_3801	-	molybdate ABC transporter, permease protein
3736	 60.85	0	3850550..3851323	-	257	206576400	modA	KPK_3802	-	molybdate ABC transporter, periplasmic molybdate-binding protein
3737	 49.33	-1	3851466..3851615	-	49	206577354	-	KPK_3803	-	hypothetical protein
3738	 62.86	0	3851769..3852557	+	262	206578007	modE	KPK_3804	-	transcriptional regulator ModE
3739	 60.62	0	3852625..3854097	+	490	206578692	-	KPK_3805	-	putative molybdenum transport ATP-binding protein ModF
3740	 59.98	0	3854307..3855323	+	338	206580627	galE	KPK_3806	-	UDP-glucose 4-epimerase
3741	 60.27	0	3855333..3856379	+	348	206576824	galT	KPK_3807	-	galactose-1-phosphate uridylyltransferase
3742	 59.46	0	3856379..3857530	+	383	206576061	galK	KPK_3808	-	galactokinase
3743	 63.60	0	3857524..3858567	+	347	206578409	galM	KPK_3809	-	galactose mutarotase
3744	 56.71	0	3858858..3859610	+	250	206577622	gpmA	KPK_3810	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
3745	 58.31	0	3859684..3860736	-	350	206577846	aroG	KPK_3811	-	3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive
3746	 55.56	0	3861051..3861428	+	125	206577254	-	KPK_3812	-	hypothetical protein
3747	 61.48	0	3861547..3862491	+	314	206579098	zitB	KPK_3814	-	zinc transporter ZitB
3748	 57.08	0	3862488..3863207	-	239	206579633	pnuC	KPK_3813	-	nicotinamide mononucleotide transporter PnuC
3749	 59.60	0	3863243..3864289	-	348	206580828	nadA	KPK_3815	-	quinolinate synthetase complex, A subunit
3750	 48.72	-1	3864368..3864484	+	38	206578305	-	KPK_3816	-	hypothetical protein
3751	 54.06	0	3865793..3866593	-	266	206576794	ygbF	KPK_3824	-	tol-pal system protein YbgF
3752	 52.95	0	3866603..3867127	-	174	206576207	pal	KPK_3825	-	peptidoglycan-associated lipoprotein
3753	 58.47	0	3867162..3868454	-	430	206575815	tolB	KPK_3826	-	Tol-Pal system beta propeller repeat protein TolB
3754	 58.89	0	3868584..3869921	-	445	206580639	tolA	KPK_3827	-	protein TolA
3755	 55.48	0	3870021..3870449	-	142	206581047	tolR	KPK_3828	-	protein TolR
3756	 54.69	0	3870453..3871145	-	230	206580447	tolQ	KPK_3829	-	protein TolQ
3757	 52.82	0	3871215..3871409	+	64	206579492	-	KPK_3830	-	hypothetical protein
3758	 53.68	0	3871696..3871980	-	94	206578912	-	KPK_3831	-	cyd operon protein YbgE
3759	 52.63	0	3872111..3872224	-	37	206578015	-	KPK_3832	-	cyd operon protein YbgT
3760	 58.77	0	3872240..3873379	-	379	206580184	cydB	KPK_3833	-	cytochrome d ubiquinol oxidase, subunit II
3761	 56.09	0	3873395..3874963	-	522	206578246	cydA	KPK_3834	-	cytochrome d ubiquinol oxidase, subunit I
3762	 58.16	0	3875791..3876660	-	289	206579009	sucD	KPK_3835	-	succinate-CoA ligase, alpha subunit
3763	 57.16	0	3876660..3877826	-	388	206577005	sucC	KPK_3836	-	succinate-CoA ligase, beta subunit
3764	 58.52	0	3877972..3879198	-	408	206577845	sucB	KPK_3837	-	dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
3765	 57.59	0	3879213..3882020	-	935	206575964	sucA	KPK_3838	-	oxoglutarate dehydrogenase (succinyl-transferring), E1 component
3766	 54.25	0	3882527..3883243	-	238	206576672	sdhB	KPK_3839	-	succinate dehydrogenase, iron-sulfur subunit
3767	 59.93	0	3883259..3885025	-	588	206580158	sdhA	KPK_3840	-	succinate dehydrogenase, flavoprotein subunit
3768	 52.87	0	3885025..3885372	-	115	206580925	sdhD	KPK_3841	-	succinate dehydrogenase, hydrophobic membrane anchor protein
3769	 49.88	-1	3885366..3885770	-	134	206581019	sdhC	KPK_3842	-	succinate dehydrogenase, cytochrome b556 subunit
3770	 54.13	0	3886411..3887694	+	427	206577689	gltA	KPK_3843	-	citrate (Si)-synthase
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.