IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
299	 56.62	0	330504..331349	+	281	206579301	ugpE	KPK_0302	-	glycerol-3-phosphate ABC transporter, permease protein UgpE
300	 60.78	0	331351..332421	+	356	206578728	ugpC	KPK_0303	-	glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC
301	 63.29	0	332418..333158	+	246	206580747	ugpQ	KPK_0304	-	glycerophosphoryl diester phosphodiesterase
302	 55.76	0	333182..333502	-	106	206580977	-	KPK_0305	-	hypothetical protein
303	 59.11	0	333626..335371	+	581	206577708	ggt	KPK_0306	-	gamma-glutamyltransferase
304	 56.24	0	335579..336067	-	162	206576737	-	KPK_0307	-	acetyltransferase, GNAT family
305	 55.96	0	336295..336948	-	217	206579956	-	KPK_0308	-	Ccm domain protein
306	 56.74	0	337213..338250	+	345	206578089	-	KPK_0309	-	oxidoreductase, NAD-binding
307	 56.90	0	338372..339067	+	231	206580047	-	KPK_0310	-	pirin family protein
308	 58.43	0	339182..340177	+	331	206580786	gntR	KPK_0311	-	transcriptional regulator GntR
309	 56.50	0	340358..340888	+	176	206576768	gntK	KPK_0312	-	thermoresistant gluconokinase
310	 60.33	0	340888..342228	+	446	206580428	gntU	KPK_0313	-	gluconate transporter GntU
311	 43.17	-2	342405..342587	-	60	206578249	-	KPK_0314	-	hypothetical protein
312	 61.52	0	342691..343797	+	368	206575934	asd	KPK_0315	-	aspartate-semialdehyde dehydrogenase
313	 59.81	0	344036..346222	+	728	206579158	glgB	KPK_0316	-	1,4-alpha-glucan branching enzyme
314	 61.86	0	346219..348195	+	658	206577357	glgX	KPK_0317	-	glycogen debranching enzyme GlgX
315	 57.33	0	348276..349571	+	431	206576691	glgC	KPK_0318	-	glucose-1-phosphate adenylyltransferase
316	 61.58	0	349571..351004	+	477	206576504	glgA	KPK_0319	-	starch synthase
317	 56.29	0	351022..353469	+	815	206576901	glgP	KPK_0320	-	glycogen phosphorylase
318	 45.98	-1	353684..354031	+	115	206580727	-	KPK_0321	-	hypothetical protein
319	 57.99	0	354393..355901	-	502	206578470	glpD	KPK_0322	-	glycerol-3-phosphate dehydrogenase
320	 57.58	0	356106..356435	+	109	206579616	glpE	KPK_0323	-	thiosulfate sulfurtransferase glpE
321	 57.64	0	356486..357316	+	276	206577327	-	KPK_0324	-	peptidase, S54 (rhomboid) family
322	 57.18	0	357366..358124	+	252	206576619	glpR	KPK_0325	-	glycerol-3-phosphate regulon repressor
323	 59.61	0	358140..360845	-	901	206580272	malT	KPK_0326	-	transcriptional regulator MalT
324	 43.33	-2	360977..361126	+	49	206578239	-	KPK_0327	-	hypothetical protein
325	 58.30	0	361470..363860	+	796	206575944	malP	KPK_0328	-	maltodextrin phosphorylase
326	 60.99	0	363871..365967	+	698	206578130	malQ	KPK_0329	-	4-alpha-glucanotransferase
327	 58.16	0	366067..367383	-	438	206576334	gntT	KPK_0330	-	high-affinity gluconate transporter
328	 57.29	0	367720..368295	-	191	206576923	yhgI	KPK_0331	-	IscR-regulated protein YhgI
329	 64.89	+1	368354..369028	-	224	206579882	gntX	KPK_0332	-	protein GntX
330	 64.47	+1	369068..369841	+	257	206580545	-	KPK_0333	-	putative pimeloyl-BioC--CoA transferase BioH
331	 48.89	-1	369962..370231	+	89	206578711	-	KPK_0334	-	hypothetical protein
332	 61.67	0	370318..370557	-	79	206580541	-	KPK_0335	-	hypothetical protein
333	 60.97	0	370567..372885	-	772	206578461	feoB	KPK_0336	-	ferrous iron transport protein B
334	 49.56	-1	372914..373141	-	75	206577565	feoA	KPK_0337	-	ferrous iron transport protein A
335	 34.21	-2	373248..373361	+	37	206577270	-	KPK_0338	-	hypothetical protein
336	 61.35	0	373561..375891	-	776	206576501	-	KPK_0339	-	S1 RNA binding domain protein
337	 55.06	0	375992..376465	-	157	206575923	greB	KPK_0340	-	transcription elongation factor GreB
338	 58.89	0	376693..377412	+	239	206580912	ompR	KPK_0341	-	transcriptional regulatory protein OmpR
339	 60.55	0	377409..378764	+	451	206580141	envZ	KPK_0342	-	osmolarity sensor protein EnvZ
340	 57.30	0	378842..380464	-	540	206579668	pckA	KPK_0343	-	phosphoenolpyruvate carboxykinase (ATP)
341	 57.18	0	380824..381708	-	294	206580591	hslO	KPK_0344	-	chaperonin HslO
342	 58.21	0	381727..382128	-	133	206577193	hslR	KPK_0345	-	heat shock protein 15
343	 57.46	0	382125..382808	-	227	206577670	-	KPK_0346	-	HAD hydrolase, family IA
344	 59.48	0	382869..384998	-	709	206577070	-	KPK_0347	-	hypothetical protein
345	 52.94	0	385319..385879	+	186	206576120	nudE	KPK_0348	-	ADP compounds hydrolase NudE
346	 58.81	0	385933..388491	-	852	206577457	mrcA	KPK_0349	-	penicillin-binding protein 1A
347	 63.92	+1	388610..389410	+	266	206577375	hofM	KPK_0350	-	HofM protein
348	 65.17	+1	389394..389927	+	177	206577021	-	KPK_0351	-	PilN family protein
349	 65.97	+1	389917..390345	+	142	206577747	-	KPK_0352	-	hypothetical protein
350	 65.62	+1	390335..390715	+	126	206580703	-	KPK_0353	-	hypothetical protein
351	 60.39	0	390651..391892	+	413	206575908	hofQ	KPK_0354	-	protein transporter HofQ
352	 52.68	0	392163..392684	+	173	206578636	aroK	KPK_0355	-	shikimate kinase
353	 57.72	0	392740..393834	+	364	206579411	aroB	KPK_0356	-	3-dehydroquinate synthase
354	 59.46	0	393919..395208	+	429	206578263	damX	KPK_0357	-	DamX protein
355	 52.17	0	395287..396114	+	275	206579011	dam	KPK_0358	-	DNA adenine methylase
356	 55.75	0	396132..396809	+	225	206575915	rpe	KPK_0359	-	ribulose-phosphate 3-epimerase
357	 59.06	0	396802..397563	+	253	206579654	gph	KPK_0360	-	phosphoglycolate phosphatase
358	 56.22	0	397556..398560	+	334	206579821	trpS	KPK_0361	-	tryptophanyl-tRNA synthetase
359	 62.88	0	398636..400009	-	457	206577656	cysG	KPK_0362	-	siroheme synthase
360	 60.86	0	400162..400488	-	108	206578210	nirD	KPK_0363	-	nitrite reductase [NAD(P)H], small subunit
361	 60.46	0	400485..403028	-	847	206576326	nirB	KPK_0364	-	nitrite reductase [NAD(P)H], large subunit
362	 59.94	0	403267..404589	+	440	206580574	codA	KPK_0366	-	cytosine deaminase
363	 56.57	0	404586..405773	-	395	206576931	tsgA	KPK_0365	-	major facilitator family transporter TsgA
364	 41.84	-2	405766..405906	-	46	206579814	-	KPK_0367	-	hypothetical protein
365	 56.49	0	406051..406620	+	189	206578867	ppiA	KPK_0368	-	peptidyl-prolyl cis-trans isomerase A
366	 57.74	0	406727..406894	+	55	206578599	-	KPK_0369	-	hypothetical protein
367	 59.54	0	406884..407486	+	200	206575851	fic	KPK_0370	-	cell filamentation protein Fic
368	 58.69	0	407519..408082	+	187	206576433	pabA	KPK_0371	-	aminodeoxychorismate synthase, component II
369	 59.71	0	408173..409393	+	406	206576340	argD	KPK_0373	-	acetylornithine/succinyldiaminopimelate aminotransferase
370	 59.02	0	409383..411461	-	692	206581064	-	KPK_0372	-	integral membrane protein, YccS/YhfK family
371	 51.34	0	411513..412145	-	210	206578857	crp	KPK_0374	-	catabolite gene activator
372	 56.54	0	412452..412856	+	134	206579756	-	KPK_0375	-	OsmC family protein
373	 59.31	0	412912..413781	-	289	206577348	-	KPK_0376	-	phosphoribulokinase/uridine kinase family protein
374	 48.86	-1	413818..414036	-	72	206578281	-	KPK_0377	-	hypothetical protein
375	 58.36	0	414033..415055	-	340	206580499	-	KPK_0378	-	hydrolase, alpha/beta fold family
376	 58.95	0	415257..417161	-	634	206577052	-	KPK_0379	-	ABC transporter, ATP-binding protein
377	 56.38	0	417335..417898	+	187	206577511	kefG	KPK_0380	-	glutathione-regulated potassium-efflux system ancillary protein KefG
378	 58.75	0	417885..419690	+	601	206577951	kefB	KPK_0381	-	glutathione-regulated potassium-efflux system protein KefB
379	 53.73	0	419702..419902	+	66	206578790	-	KPK_0382	-	hypothetical protein
380	 55.95	0	419996..420592	+	198	206579324	slyD	KPK_0383	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
381	 54.34	0	420651..420869	-	72	206579818	-	KPK_0384	-	slyX protein
382	 54.75	0	421092..421922	+	276	206581102	fkpA	KPK_0385	-	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA
383	 51.04	0	422091..422813	+	240	206576219	-	KPK_0386	-	hypothetical protein
384	 62.02	0	422813..423199	+	128	206576893	tusD	KPK_0387	-	sulfurtransferase TusD
385	 59.17	0	423199..423558	+	119	206577489	tusC	KPK_0388	-	sulfur relay protein TusC/DsrF
386	 57.29	0	423566..423853	+	95	206575741	tusB	KPK_0389	-	protein TusB
387	 55.20	0	423978..424352	+	124	206576337	rpsL	KPK_0390	-	ribosomal protein S12
388	 50.53	0	424449..424919	+	156	206576912	rpsG	KPK_0391	-	ribosomal protein S7
389	 52.06	0	425016..427130	+	704	206577548	fusA_1	KPK_0392	-	translation elongation factor G
390	 54.01	0	427200..428384	+	394	206578114	tuf_1	KPK_0393	-	translation elongation factor Tu
391	 43.08	-2	428564..428758	+	64	206578243	bfd	KPK_0394	-	bacterioferritin-associated ferredoxin
392	 46.12	-1	428832..429308	+	158	206579813	bfr	KPK_0396	-	bacterioferritin
393	 57.20	0	429292..429777	-	161	206577659	-	KPK_0395	-	peptidase, A24 (type IV prepilin peptidase) family
394	 50.93	0	429842..429949	+	35	206580385	-	KPK_0397	-	hypothetical protein
395	 53.85	0	430159..430470	+	103	206575812	rpsJ	KPK_0398	-	ribosomal protein S10
396	 51.43	0	430503..431132	+	209	206576036	rplC	KPK_0399	-	ribosomal protein L3
397	 53.47	0	431143..431748	+	201	206578232	rplD	KPK_0400	-	ribosomal protein L4
398	 48.51	-1	431745..432047	+	100	206577116	rplW	KPK_0401	-	ribosomal protein L23
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.