IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3414	 59.83	0	3497073..3498608	-	511	206579788	mviN	KPK_3476	-	integral membrane protein MviN
3415	 61.26	0	3498720..3499643	-	307	206577688	-	KPK_3477	-	oxidoreductase family, NAD-binding
3416	 58.87	0	3499646..3500299	-	217	206578651	-	KPK_3478	-	hypothetical protein
3417	 56.58	0	3500309..3500893	-	194	206580581	rimJ	KPK_3479	-	ribosomal-protein-alanine acetyltransferase
3418	 61.95	0	3501122..3502330	+	402	206580200	mdtH	KPK_3480	-	multidrug resistance protein MdtH
3419	 55.08	0	3502446..3503006	+	186	206576721	-	KPK_3481	-	putative lipoprotein
3420	 47.62	-1	3503018..3503143	-	41	206576252	-	KPK_3482	-	hypothetical protein
3421	 59.60	0	3503132..3504178	+	348	206578255	pyrC	KPK_3483	-	dihydroorotase, homodimeric type
3422	 58.73	0	3504252..3504503	+	83	206579263	dinI	KPK_3484	-	DNA-damage-inducible protein I
3423	 47.84	-1	3504808..3505062	+	84	206578534	-	KPK_3485	-	hypothetical protein
3424	 58.36	0	3505189..3506307	+	372	206580711	solA	KPK_3486	-	N-methyl-L-tryptophan oxidase
3425	 48.25	-1	3506380..3506493	+	37	206579333	-	KPK_3488	-	hypothetical protein
3426	 53.71	0	3506479..3507543	-	354	206577526	-	KPK_3487	-	rhodanese domain protein
3427	 58.85	0	3507749..3508669	+	306	206580836	lpxL_1	KPK_3489	-	lipid A biosynthesis lauroyl acyltransferase
3428	 58.92	0	3508840..3510078	+	412	206580528	mdtG	KPK_3490	-	multidrug resistance protein MdtG
3429	 53.23	0	3510170..3510556	+	128	206580005	-	KPK_3491	-	acidic protein MsyB
3430	 60.96	0	3510557..3510784	-	75	206576369	-	KPK_3492	-	putative lipoprotein
3431	 61.09	0	3510851..3513379	-	842	206577816	mdoH	KPK_3493	-	glucans biosynthesis glucosyltransferase H
3432	 54.30	0	3513372..3514907	-	511	206577546	mdoG	KPK_3494	-	glucans biosynthesis protein G
3433	 54.18	0	3515177..3516337	+	386	206579641	-	KPK_3495	-	putative glucans biosynthesis protein C
3434	 59.09	0	3516372..3516965	-	197	206580813	-	KPK_3496	-	transcriptional regulator, TetR family
3435	 61.36	0	3517032..3517559	-	175	206577665	-	KPK_3497	-	Appr-1-p processing enzyme domain protein
3436	 59.42	0	3517712..3518194	-	160	206579766	-	KPK_3498	-	hypothetical protein
3437	 60.00	0	3518298..3518852	-	184	206576038	-	KPK_3499	-	chaperone, TorD family
3438	 56.50	0	3518875..3519612	-	245	206576096	-	KPK_3500	-	PHP domain protein
3439	 61.02	0	3519701..3520639	-	312	206579820	-	KPK_3501	-	putative dehydrogenase
3440	 48.84	-1	3521524..3522387	+	287	206576621	-	KPK_3503	-	arginase family protein
3441	 44.68	-1	3522482..3523054	+	190	206579218	-	KPK_3504	-	transcriptional regulator, TetR family
3442	 64.24	+1	3523243..3524148	-	301	206578459	-	KPK_3505	-	transcriptional regulator, LysR family
3443	 62.25	0	3524263..3525123	+	286	206578432	-	KPK_3506	-	pirin family protein
3444	 59.88	0	3525142..3525819	+	225	206577675	-	KPK_3507	-	isochorismatase hydrolase family protein
3445	 54.01	0	3526786..3527844	-	352	206575885	phoH	KPK_3509	-	protein phoH
3446	 60.28	0	3528079..3529362	-	427	206577854	-	KPK_3510	-	Tat-translocated enzyme
3447	 56.91	0	3529367..3530494	-	375	206580108	-	KPK_3511	-	hypothetical protein
3448	 60.17	0	3530546..3531376	-	276	206576827	efeU	KPK_3512	-	ferrous iron permease EfeU
3449	 54.68	0	3531647..3532831	+	394	206578919	-	KPK_3513	-	Na+ dependent nucleoside transporter
3450	 62.89	0	3532863..3533312	-	149	206580869	-	KPK_3514	-	putative lipoprotein
3451	 56.99	0	3533432..3534940	-	502	206577256	putP	KPK_3515	-	sodium/proline symporter
3452	 35.96	-2	3535206..3535319	-	37	206576605	-	KPK_3516	-	hypothetical protein
3453	 64.04	+1	3535362..3539324	+	1320	206576015	putA	KPK_3517	-	bifunctional protein PutA
3454	 62.88	0	3539571..3539966	+	131	206575813	-	KPK_3519	-	hypothetical protein
3455	 59.47	0	3539963..3540601	-	212	206578371	rutR	KPK_3518	-	transcriptional regulator RutR
3456	 60.35	0	3540886..3541977	+	363	206576414	-	KPK_3520	-	putative monooxygenase rutA
3457	 60.62	0	3541977..3542687	+	236	206580040	-	KPK_3521	-	putative isochorismatase family protein, rutB
3458	 58.52	0	3542680..3543072	+	130	206580281	-	KPK_3522	-	rutC protein
3459	 68.29	+1	3543072..3543872	+	266	206580846	-	KPK_3523	-	putative rutD protein
3460	 62.94	0	3543869..3544459	+	196	206579119	-	KPK_3524	-	putative rutE protein
3461	 65.25	+1	3544470..3544964	+	164	206579701	-	KPK_3525	-	putative flavin reductase rutF
3462	 65.08	+1	3544986..3546308	+	440	206577186	-	KPK_3526	-	putative pyrimidine permease RutG
3463	 64.10	+1	3546374..3546490	-	38	206578109	-	KPK_3527	-	hypothetical protein
3464	 64.10	+1	3546963..3547079	-	38	206580709	-	KPK_3528	-	hypothetical protein
3465	 63.79	+1	3547583..3548521	-	312	206580121	-	KPK_3529	-	hypothetical protein
3466	 59.80	0	3549294..3549890	+	198	206576769	wrbA	KPK_3530	-	NAD(P)H:quinone oxidoreductase, type IV
3467	 53.51	0	3549911..3550138	+	75	206576171	-	KPK_3531	-	hypothetical protein
3468	 35.25	-2	3550283..3550960	-	225	206578303	-	KPK_3532	-	hypothetical protein
3469	 59.70	0	3551129..3552376	-	415	206577711	agp	KPK_3533	-	glucose-1-phosphatase
3470	 62.89	0	3552529..3552978	+	149	206576920	-	KPK_3534	-	putative transcriptional regulator
3471	 63.24	0	3553094..3553882	+	262	206576382	-	KPK_3535	-	oxidoreductase, short chain dehydrogenase/reductase family
3472	 60.81	0	3553903..3554124	-	73	206578205	-	KPK_3536	-	hypothetical protein
3473	 52.85	0	3554381..3554503	+	40	206577592	-	KPK_3537	-	hypothetical protein
3474	 58.62	0	3554623..3556014	-	463	206576155	puuP	KPK_3538	-	putrescine importer
3475	 58.51	0	3556368..3557789	-	473	206576948	puuA	KPK_3539	-	glutamate--putrescine ligase
3476	 56.73	0	3558003..3558767	+	254	206576008	puuD	KPK_3540	-	gamma-glutamyl-gamma-aminobutyrate hydrolase
3477	 53.94	0	3558793..3559350	+	185	206580692	puuR	KPK_3541	-	transcriptional regulator PuuR
3478	 60.95	0	3559671..3561158	+	495	206580335	puuC	KPK_3542	-	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
3479	 62.61	0	3561161..3562441	+	426	206578504	puuB	KPK_3544	-	gamma-glutamylputrescine oxidoreductase
3480	 60.19	0	3562438..3563379	-	313	206579547	-	KPK_3543	-	transcriptional regulator, LysR family
3481	 59.58	0	3563483..3564568	+	361	206577963	-	KPK_3545	-	tartrate dehydrogenase/decarboxylase
3482	 57.90	0	3565154..3566761	+	535	206578341	-	KPK_3546	-	transporter, betaine/carnitine/choline transporter (BCCT) family
3483	 57.07	0	3566798..3567922	+	374	206577758	-	KPK_3547	-	Rieske 2Fe-2S domain protein
3484	 61.84	0	3567941..3569389	+	482	206576745	-	KPK_3548	-	putative succinate-semialdehyde dehydrogenase (NAD(P)(+))
3485	 59.11	0	3569446..3570411	+	321	206580230	-	KPK_3549	-	oxidoreductase, FAD/NAD-binding/iron-sulfur cluster binding protein
3486	 60.91	0	3570449..3572950	-	833	206581034	ptsA	KPK_3550	-	multiphosphoryl transfer protein 2
3487	 61.19	0	3573260..3574336	+	358	206579083	frwC	KPK_3551	-	fructose-like permease IIC component 2
3488	 55.45	0	3574357..3574677	+	106	206579426	frwB	KPK_3552	-	fructose-like phosphotransferase enzyme IIB component 2
3489	 58.49	0	3574727..3577024	+	765	206577165	-	KPK_3553	-	formate C-acetyltransferase 2
3490	 60.39	0	3576990..3577865	+	291	206577451	-	KPK_3554	-	glycyl-radical enzyme activating protein family
3491	 57.31	0	3577881..3578222	+	113	206578209	frwD	KPK_3555	-	fructose-like phosphotransferase enzyme IIB component 3
3492	 60.16	0	3578236..3579003	-	255	206576386	-	KPK_3556	-	phytanoyl-CoA dioxygenase family protein
3493	 47.95	-1	3579080..3579250	-	56	206576820	-	KPK_3557	-	hypothetical protein
3494	 56.47	0	3579265..3580098	+	277	206579302	-	KPK_3559	-	transcriptional regulator, AraC family
3495	 58.41	0	3580095..3581015	-	306	206578784	-	KPK_3558	-	putative membrane-bound diguanylate cyclase
3496	 63.65	+1	3581259..3582287	-	342	206576116	fbpC	KPK_3560	-	iron(III) ABC transporter, ATP-binding protein
3497	 62.98	0	3582289..3583863	-	524	206576921	fbpB	KPK_3561	-	iron(III) ABC transporter, permease protein
3498	 57.72	0	3583885..3584901	-	338	206579888	fbpA	KPK_3562	-	iron(III) ABC transporter, periplasmic iron(III)-binding protein
3499	 55.47	0	3585304..3586839	+	511	206580516	-	KPK_3563	-	cyclic diguanylate phosphodiesterase (EAL) domain protein
3500	 50.00	-1	3586881..3587216	-	111	206580513	-	KPK_3564	-	anti-anti-sigma factor
3501	 50.47	0	3587281..3589707	-	808	206578763	-	KPK_3565	-	glycogen/starch/alpha-glucan phosphorylase family protein
3502	 56.95	0	3590245..3591870	-	541	206577561	-	KPK_3567	-	periplasmic oligopeptide-binding protein
3503	 57.88	0	3592139..3592798	+	219	206578129	-	KPK_3568	-	hypothetical protein
3504	 54.55	0	3592887..3593216	+	109	206576970	tusE	KPK_3570	-	sulfurtransferase TusE
3505	 60.64	0	3593213..3593494	-	93	206576539	-	KPK_3569	-	acylphosphatase
3506	 62.48	0	3593543..3594331	-	262	206581037	-	KPK_3571	-	putative transcriptional regulator, AraC family
3507	 64.14	+1	3594349..3594903	-	184	206580391	-	KPK_3572	-	phosphatidylethanolamine-binding protein
3508	 59.43	0	3595025..3596296	+	423	206579475	-	KPK_3573	-	hypothetical protein
3509	 58.18	0	3596356..3596673	+	105	206578872	-	KPK_3574	-	hemimethylated DNA-binding protein
3510	 58.94	0	3596702..3597115	-	137	206576983	-	KPK_3575	-	putative CoA-binding protein
3511	 56.64	0	3597269..3597727	+	152	206575855	mgsA	KPK_3576	-	methylglyoxal synthase
3512	 58.78	0	3597739..3599793	-	684	206577834	helD	KPK_3577	-	helicase IV
3513	 55.03	0	3599918..3600364	+	148	206577384	-	KPK_3578	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.