IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3381	 62.50	0	3465380..3466339	+	319	206577781	-	KPK_3443	-	LysM domain/ErfK/YbiS/YcfS/YnhG family protein
3382	 54.65	0	3466468..3466725	-	85	206577201	-	KPK_3444	-	hypothetical protein
3383	 60.22	0	3466975..3467610	+	211	206577741	-	KPK_3445	-	transcriptional regulator, TetR family
3384	 30.89	-2	3467663..3467785	-	40	206579524	-	KPK_3446	-	hypothetical protein
3385	 58.97	0	3467849..3470044	+	731	206578887	iutA	KPK_3447	-	ferric aerobactin receptor
3386	 57.22	0	3470102..3470641	-	179	206580702	-	KPK_3448	-	surface antigen domain protein
3387	 58.39	0	3470834..3472138	-	434	206580126	ndh	KPK_3449	-	NADH dehydrogenase
3388	 35.68	-2	3472137..3472349	+	70	206578900	-	KPK_3450	-	hypothetical protein
3389	 53.41	0	3472383..3472925	-	180	206579491	-	KPK_3451	-	hypothetical protein
3390	 59.43	0	3472961..3473983	-	340	206576496	nagZ	KPK_3452	-	beta-N-acetylhexosaminidase
3391	 62.32	0	3473995..3474822	-	275	206577672	thiK	KPK_3453	-	thiamine kinase
3392	 62.35	0	3474803..3475450	-	215	206580710	-	KPK_3454	-	putative lipoprotein
3393	 61.87	0	3475463..3475837	-	124	206575734	-	KPK_3455	-	putative lipoprotein
3394	 55.74	0	3475842..3476198	-	118	206578647	hinT	KPK_3456	-	purine nucleoside phosphoramidase
3395	 56.00	0	3476460..3477893	-	477	206579407	ptsG	KPK_3457	-	PTS system, glucose-specific IIBC component
3396	 58.49	0	3478190..3478984	-	264	206578149	-	KPK_3458	-	hydrolase, TatD family
3397	 63.88	+1	3478995..3479999	-	334	206578898	holB	KPK_3459	-	DNA polymerase III, delta' subunit
3398	 63.86	+1	3479996..3480637	-	213	206579513	tmk	KPK_3460	-	thymidylate kinase
3399	 57.97	0	3480627..3481649	-	340	206580253	-	KPK_3461	-	hypothetical protein
3400	 60.12	0	3481651..3482460	-	269	206575879	pabC	KPK_3462	-	aminodeoxychorismate lyase
3401	 58.53	0	3482586..3483827	-	413	206576302	fabF	KPK_3463	-	3-oxoacyl-[acyl-carrier-protein] synthase II
3402	 48.52	-1	3483917..3484153	-	78	206577377	acpP	KPK_3464	-	acyl carrier protein
3403	 53.47	0	3484364..3485098	-	244	206577811	fabG	KPK_3465	-	3-oxoacyl-[acyl-carrier-protein] reductase
3404	 60.75	0	3485111..3486040	-	309	206578837	fabD	KPK_3466	-	malonyl CoA-acyl carrier protein transacylase
3405	 58.91	0	3486056..3487009	-	317	206579577	fabH	KPK_3467	-	3-oxoacyl-[acyl-carrier-protein] synthase 3
3406	 56.74	0	3487064..3488161	-	365	206579344	plsX	KPK_3468	-	fatty acid/phospholipid synthesis protein PlsX
3407	 53.45	0	3488365..3488538	-	57	206579800	rpmF	KPK_3469	-	ribosomal protein L32
3408	 51.34	0	3488555..3489076	-	173	206580556	-	KPK_3470	-	hypothetical protein
3409	 56.41	0	3489218..3489802	+	194	206576246	maf_1	KPK_3471	-	septum formation protein Maf
3410	 58.39	0	3489840..3490793	-	317	206577057	rluC	KPK_3472	-	ribosomal large subunit pseudouridine synthase C
3411	 61.06	0	3491493..3494720	+	1075	206577486	rne	KPK_3473	-	ribonuclease E
3412	 60.45	0	3494760..3495788	-	342	206578654	-	KPK_3474	-	transcriptional regulator, LysR family
3413	 64.20	+1	3495805..3497019	+	404	206579416	-	KPK_3475	-	transporter, major facilitator family
3414	 59.83	0	3497073..3498608	-	511	206579788	mviN	KPK_3476	-	integral membrane protein MviN
3415	 61.26	0	3498720..3499643	-	307	206577688	-	KPK_3477	-	oxidoreductase family, NAD-binding
3416	 58.87	0	3499646..3500299	-	217	206578651	-	KPK_3478	-	hypothetical protein
3417	 56.58	0	3500309..3500893	-	194	206580581	rimJ	KPK_3479	-	ribosomal-protein-alanine acetyltransferase
3418	 61.95	0	3501122..3502330	+	402	206580200	mdtH	KPK_3480	-	multidrug resistance protein MdtH
3419	 55.08	0	3502446..3503006	+	186	206576721	-	KPK_3481	-	putative lipoprotein
3420	 47.62	-1	3503018..3503143	-	41	206576252	-	KPK_3482	-	hypothetical protein
3421	 59.60	0	3503132..3504178	+	348	206578255	pyrC	KPK_3483	-	dihydroorotase, homodimeric type
3422	 58.73	0	3504252..3504503	+	83	206579263	dinI	KPK_3484	-	DNA-damage-inducible protein I
3423	 47.84	-1	3504808..3505062	+	84	206578534	-	KPK_3485	-	hypothetical protein
3424	 58.36	0	3505189..3506307	+	372	206580711	solA	KPK_3486	-	N-methyl-L-tryptophan oxidase
3425	 48.25	-1	3506380..3506493	+	37	206579333	-	KPK_3488	-	hypothetical protein
3426	 53.71	0	3506479..3507543	-	354	206577526	-	KPK_3487	-	rhodanese domain protein
3427	 58.85	0	3507749..3508669	+	306	206580836	lpxL_1	KPK_3489	-	lipid A biosynthesis lauroyl acyltransferase
3428	 58.92	0	3508840..3510078	+	412	206580528	mdtG	KPK_3490	-	multidrug resistance protein MdtG
3429	 53.23	0	3510170..3510556	+	128	206580005	-	KPK_3491	-	acidic protein MsyB
3430	 60.96	0	3510557..3510784	-	75	206576369	-	KPK_3492	-	putative lipoprotein
3431	 61.09	0	3510851..3513379	-	842	206577816	mdoH	KPK_3493	-	glucans biosynthesis glucosyltransferase H
3432	 54.30	0	3513372..3514907	-	511	206577546	mdoG	KPK_3494	-	glucans biosynthesis protein G
3433	 54.18	0	3515177..3516337	+	386	206579641	-	KPK_3495	-	putative glucans biosynthesis protein C
3434	 59.09	0	3516372..3516965	-	197	206580813	-	KPK_3496	-	transcriptional regulator, TetR family
3435	 61.36	0	3517032..3517559	-	175	206577665	-	KPK_3497	-	Appr-1-p processing enzyme domain protein
3436	 59.42	0	3517712..3518194	-	160	206579766	-	KPK_3498	-	hypothetical protein
3437	 60.00	0	3518298..3518852	-	184	206576038	-	KPK_3499	-	chaperone, TorD family
3438	 56.50	0	3518875..3519612	-	245	206576096	-	KPK_3500	-	PHP domain protein
3439	 61.02	0	3519701..3520639	-	312	206579820	-	KPK_3501	-	putative dehydrogenase
3440	 48.84	-1	3521524..3522387	+	287	206576621	-	KPK_3503	-	arginase family protein
3441	 44.68	-1	3522482..3523054	+	190	206579218	-	KPK_3504	-	transcriptional regulator, TetR family
3442	 64.24	+1	3523243..3524148	-	301	206578459	-	KPK_3505	-	transcriptional regulator, LysR family
3443	 62.25	0	3524263..3525123	+	286	206578432	-	KPK_3506	-	pirin family protein
3444	 59.88	0	3525142..3525819	+	225	206577675	-	KPK_3507	-	isochorismatase hydrolase family protein
3445	 54.01	0	3526786..3527844	-	352	206575885	phoH	KPK_3509	-	protein phoH
3446	 60.28	0	3528079..3529362	-	427	206577854	-	KPK_3510	-	Tat-translocated enzyme
3447	 56.91	0	3529367..3530494	-	375	206580108	-	KPK_3511	-	hypothetical protein
3448	 60.17	0	3530546..3531376	-	276	206576827	efeU	KPK_3512	-	ferrous iron permease EfeU
3449	 54.68	0	3531647..3532831	+	394	206578919	-	KPK_3513	-	Na+ dependent nucleoside transporter
3450	 62.89	0	3532863..3533312	-	149	206580869	-	KPK_3514	-	putative lipoprotein
3451	 56.99	0	3533432..3534940	-	502	206577256	putP	KPK_3515	-	sodium/proline symporter
3452	 35.96	-2	3535206..3535319	-	37	206576605	-	KPK_3516	-	hypothetical protein
3453	 64.04	+1	3535362..3539324	+	1320	206576015	putA	KPK_3517	-	bifunctional protein PutA
3454	 62.88	0	3539571..3539966	+	131	206575813	-	KPK_3519	-	hypothetical protein
3455	 59.47	0	3539963..3540601	-	212	206578371	rutR	KPK_3518	-	transcriptional regulator RutR
3456	 60.35	0	3540886..3541977	+	363	206576414	-	KPK_3520	-	putative monooxygenase rutA
3457	 60.62	0	3541977..3542687	+	236	206580040	-	KPK_3521	-	putative isochorismatase family protein, rutB
3458	 58.52	0	3542680..3543072	+	130	206580281	-	KPK_3522	-	rutC protein
3459	 68.29	+1	3543072..3543872	+	266	206580846	-	KPK_3523	-	putative rutD protein
3460	 62.94	0	3543869..3544459	+	196	206579119	-	KPK_3524	-	putative rutE protein
3461	 65.25	+1	3544470..3544964	+	164	206579701	-	KPK_3525	-	putative flavin reductase rutF
3462	 65.08	+1	3544986..3546308	+	440	206577186	-	KPK_3526	-	putative pyrimidine permease RutG
3463	 64.10	+1	3546374..3546490	-	38	206578109	-	KPK_3527	-	hypothetical protein
3464	 64.10	+1	3546963..3547079	-	38	206580709	-	KPK_3528	-	hypothetical protein
3465	 63.79	+1	3547583..3548521	-	312	206580121	-	KPK_3529	-	hypothetical protein
3466	 59.80	0	3549294..3549890	+	198	206576769	wrbA	KPK_3530	-	NAD(P)H:quinone oxidoreductase, type IV
3467	 53.51	0	3549911..3550138	+	75	206576171	-	KPK_3531	-	hypothetical protein
3468	 35.25	-2	3550283..3550960	-	225	206578303	-	KPK_3532	-	hypothetical protein
3469	 59.70	0	3551129..3552376	-	415	206577711	agp	KPK_3533	-	glucose-1-phosphatase
3470	 62.89	0	3552529..3552978	+	149	206576920	-	KPK_3534	-	putative transcriptional regulator
3471	 63.24	0	3553094..3553882	+	262	206576382	-	KPK_3535	-	oxidoreductase, short chain dehydrogenase/reductase family
3472	 60.81	0	3553903..3554124	-	73	206578205	-	KPK_3536	-	hypothetical protein
3473	 52.85	0	3554381..3554503	+	40	206577592	-	KPK_3537	-	hypothetical protein
3474	 58.62	0	3554623..3556014	-	463	206576155	puuP	KPK_3538	-	putrescine importer
3475	 58.51	0	3556368..3557789	-	473	206576948	puuA	KPK_3539	-	glutamate--putrescine ligase
3476	 56.73	0	3558003..3558767	+	254	206576008	puuD	KPK_3540	-	gamma-glutamyl-gamma-aminobutyrate hydrolase
3477	 53.94	0	3558793..3559350	+	185	206580692	puuR	KPK_3541	-	transcriptional regulator PuuR
3478	 60.95	0	3559671..3561158	+	495	206580335	puuC	KPK_3542	-	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
3479	 62.61	0	3561161..3562441	+	426	206578504	puuB	KPK_3544	-	gamma-glutamylputrescine oxidoreductase
3480	 60.19	0	3562438..3563379	-	313	206579547	-	KPK_3543	-	transcriptional regulator, LysR family
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.