IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3310	 51.28	0	3405457..3405807	-	116	206576526	-	KPK_3372	-	hypothetical protein
3311	 55.36	0	3405804..3406307	-	167	206576574	-	KPK_3373	-	phage lysozyme
3312	 52.34	0	3406279..3406620	-	113	206576544	-	KPK_3374	-	hypothetical protein
3313	 52.45	0	3407286..3407693	-	135	206580517	-	KPK_3375	-	hypothetical protein
3314	 47.46	-1	3407741..3407917	-	58	206576084	-	KPK_3376	-	hypothetical protein
3315	 38.66	-2	3408365..3409435	+	356	206578757	-	KPK_3377	-	hypothetical protein
3316	 34.93	-2	3409437..3410126	+	229	206578971	-	KPK_3379	-	hypothetical protein
3317	 40.80	-2	3410092..3411135	-	347	206579328	-	KPK_3378	-	DNA-cytosine methyltransferase
3318	 43.77	-2	3411225..3411569	-	114	206581112	-	KPK_3380	-	antitermination protein Q
3319	 52.71	0	3411582..3412613	-	343	206580771	-	KPK_3381	-	hypothetical protein
3320	 48.53	-1	3412613..3412816	-	67	206577824	-	KPK_3382	-	hypothetical protein
3321	 51.20	0	3412813..3413310	-	165	206578549	-	KPK_3383	-	LexA DNA binding domain protein
3322	 49.83	-1	3413246..3413536	-	96	206577211	-	KPK_3384	-	hypothetical protein
3323	 47.86	-1	3413548..3413781	-	77	206578989	-	KPK_3385	-	DinI family protein
3324	 47.69	-1	3413942..3414136	+	64	206575831	-	KPK_3386	-	hypothetical protein
3325	 37.39	-2	3414220..3414909	+	229	206579738	-	KPK_3387	-	hypothetical protein
3326	 41.50	-2	3414980..3415726	+	248	206577476	-	KPK_3388	-	oxidoreductase, short chain dehydrogenase/reductase family
3327	 42.86	-2	3415820..3416029	+	69	206577960	-	KPK_3389	-	hypothetical protein
3328	 49.12	-1	3416050..3416277	+	75	206576752	-	KPK_3390	-	hypothetical protein
3329	 51.24	0	3416228..3416428	+	66	206580068	-	KPK_3391	-	hypothetical protein
3330	 47.85	-1	3416724..3418487	-	587	206580435	-	KPK_3392	-	cyclic diguanylate phosphodiesterase (EAL) domain protein
3331	 46.24	-1	3418532..3418717	-	61	206580130	-	KPK_3393	-	hypothetical protein
3332	 53.24	0	3418800..3419246	-	148	206580659	-	KPK_3394	-	hypothetical protein
3333	 53.55	0	3419254..3419718	-	154	206579522	-	KPK_3395	-	hypothetical protein
3334	 50.81	0	3419711..3420694	-	327	206578820	-	KPK_3396	-	hypothetical protein
3335	 51.71	0	3420746..3421300	-	184	206581069	-	KPK_3397	-	hypothetical protein
3336	 45.37	-1	3421303..3421518	-	71	206578126	-	KPK_3398	-	hypothetical protein
3337	 42.82	-2	3421620..3422009	+	129	206581103	-	KPK_3399	-	DNA-binding protein
3338	 49.04	-1	3422355..3422825	-	156	206579937	-	KPK_3400	-	hypothetical protein
3339	 49.23	-1	3423059..3423253	+	64	206577683	-	KPK_3401	-	hypothetical protein
3340	 53.62	0	3423296..3423709	+	137	206576463	-	KPK_3402	-	putative transcriptional regulator
3341	 42.98	-2	3423780..3423893	+	37	206575728	-	KPK_3403	-	hypothetical protein
3342	 48.33	-1	3423964..3424143	+	59	206576465	-	KPK_3404	-	hypothetical protein
3343	 46.34	-1	3424196..3424441	+	81	206577084	-	KPK_3405	-	putative excisionase
3344	 43.35	-2	3424422..3425549	+	375	206577296	-	KPK_3406	-	site-specific recombinase, phage integrase family
3345	 55.48	0	3425667..3426917	-	416	206579025	icd	KPK_3407	-	isocitrate dehydrogenase, NADP-dependent
3346	 59.75	0	3427158..3427808	+	216	206581129	rluE	KPK_3408	-	ribosomal large subunit pseudouridine synthase E
3347	 59.48	0	3427825..3428283	+	152	206580234	-	KPK_3409	-	hydrolase, NUDIX family
3348	 58.18	0	3428340..3429446	+	368	206576946	trmU	KPK_3410	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3349	 60.59	0	3429501..3430142	+	213	206576641	-	KPK_3411	-	hypothetical protein
3350	 56.97	0	3430146..3431516	+	456	206578270	purB	KPK_3412	-	adenylosuccinate lyase
3351	 57.30	0	3431571..3431933	-	120	206577856	-	KPK_3413	-	cupin domain protein
3352	 63.69	+1	3432017..3432823	-	268	206578780	-	KPK_3414	-	transcriptional regulator, AraC family
3353	 61.01	0	3433107..3433778	+	223	206579731	phoP	KPK_3415	-	transcriptional regulatory protein PhoP
3354	 59.71	0	3433778..3435244	+	488	206580317	phoQ	KPK_3416	-	sensor protein PhoQ
3355	 59.80	0	3435330..3436451	+	373	206580898	-	KPK_3417	-	cupin family protein
3356	 52.24	0	3436589..3437080	-	163	206576048	-	KPK_3418	-	putative transposase
3357	 57.66	0	3437364..3438596	-	410	206576009	pepT	KPK_3419	-	peptidase T
3358	 56.90	0	3438854..3439990	+	378	206577558	potA	KPK_3420	-	spermidine/putrescine ABC transporter, ATP-binding protein
3359	 57.34	0	3439974..3440831	+	285	206577935	potB	KPK_3421	-	spermidine/putrescine ABC transporter, permease protein PotB
3360	 56.11	0	3440828..3441613	+	261	206576318	potC	KPK_3422	-	spermidine/putrescine ABC transporter, permease protein PotC
3361	 56.35	0	3441610..3442656	+	348	206580074	potD	KPK_3423	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
3362	 65.74	+1	3442701..3444425	-	574	206580623	-	KPK_3424	-	hypothetical protein
3363	 62.98	0	3444422..3446050	-	542	206580908	-	KPK_3425	-	AMP-binding enzyme
3364	 59.93	0	3446288..3448291	-	667	206579271	tktA_2	KPK_3426	-	transketolase
3365	 57.76	0	3448311..3449264	-	317	206577436	-	KPK_3427	-	putative transaldolase
3366	 53.38	0	3449292..3449750	-	152	206578229	rpiB	KPK_3428	-	ribose 5-phosphate isomerase B
3367	 49.33	-1	3449779..3450153	-	124	206576238	-	KPK_3429	-	PTS system, glucitol/sorbitol-specific IIA component
3368	 55.69	0	3450155..3451174	-	339	206578668	kdgT	KPK_3430	-	2-keto-3-deoxygluconate permease
3369	 57.88	0	3451267..3452985	-	572	206577531	-	KPK_3431	-	sorbitol phosphotransferase enzyme II
3370	 55.26	0	3453021..3454028	-	335	206577058	-	KPK_3432	-	putative 4-hydroxythreonine-4-phosphate dehydrogenase
3371	 57.48	0	3454271..3455065	+	264	206576289	tpiB	KPK_3433	-	triosephosphate isomerase
3372	 55.56	0	3455101..3456063	+	320	206580613	-	KPK_3434	-	putative sugar-binding domain protein
3373	 56.52	0	3456088..3456432	-	114	206579790	-	KPK_3435	-	hypothetical protein
3374	 61.85	0	3456523..3457353	-	276	206579384	npdA	KPK_3436	-	NAD-dependent deacetylase
3375	 61.84	0	3457368..3458279	-	303	206578302	nagK	KPK_3437	-	N-acetylglucosamine kinase
3376	 58.80	0	3458328..3459572	-	414	206577709	lolE	KPK_3438	-	lipoprotein releasing system, transmembrane protein LolE
3377	 60.54	0	3459572..3460273	-	233	206576765	lolD	KPK_3439	-	lipoprotein releasing system, ATP-binding protein LolD
3378	 60.50	0	3460266..3461465	-	399	206580257	lolC	KPK_3440	-	lipoprotein-releasing system transmembrane protein LolC
3379	 61.42	0	3461770..3465216	+	1148	206576037	mfd	KPK_3442	-	transcription-repair coupling factor
3380	 51.33	0	3465182..3465331	-	49	206576634	-	KPK_3441	-	hypothetical protein
3381	 62.50	0	3465380..3466339	+	319	206577781	-	KPK_3443	-	LysM domain/ErfK/YbiS/YcfS/YnhG family protein
3382	 54.65	0	3466468..3466725	-	85	206577201	-	KPK_3444	-	hypothetical protein
3383	 60.22	0	3466975..3467610	+	211	206577741	-	KPK_3445	-	transcriptional regulator, TetR family
3384	 30.89	-2	3467663..3467785	-	40	206579524	-	KPK_3446	-	hypothetical protein
3385	 58.97	0	3467849..3470044	+	731	206578887	iutA	KPK_3447	-	ferric aerobactin receptor
3386	 57.22	0	3470102..3470641	-	179	206580702	-	KPK_3448	-	surface antigen domain protein
3387	 58.39	0	3470834..3472138	-	434	206580126	ndh	KPK_3449	-	NADH dehydrogenase
3388	 35.68	-2	3472137..3472349	+	70	206578900	-	KPK_3450	-	hypothetical protein
3389	 53.41	0	3472383..3472925	-	180	206579491	-	KPK_3451	-	hypothetical protein
3390	 59.43	0	3472961..3473983	-	340	206576496	nagZ	KPK_3452	-	beta-N-acetylhexosaminidase
3391	 62.32	0	3473995..3474822	-	275	206577672	thiK	KPK_3453	-	thiamine kinase
3392	 62.35	0	3474803..3475450	-	215	206580710	-	KPK_3454	-	putative lipoprotein
3393	 61.87	0	3475463..3475837	-	124	206575734	-	KPK_3455	-	putative lipoprotein
3394	 55.74	0	3475842..3476198	-	118	206578647	hinT	KPK_3456	-	purine nucleoside phosphoramidase
3395	 56.00	0	3476460..3477893	-	477	206579407	ptsG	KPK_3457	-	PTS system, glucose-specific IIBC component
3396	 58.49	0	3478190..3478984	-	264	206578149	-	KPK_3458	-	hydrolase, TatD family
3397	 63.88	+1	3478995..3479999	-	334	206578898	holB	KPK_3459	-	DNA polymerase III, delta' subunit
3398	 63.86	+1	3479996..3480637	-	213	206579513	tmk	KPK_3460	-	thymidylate kinase
3399	 57.97	0	3480627..3481649	-	340	206580253	-	KPK_3461	-	hypothetical protein
3400	 60.12	0	3481651..3482460	-	269	206575879	pabC	KPK_3462	-	aminodeoxychorismate lyase
3401	 58.53	0	3482586..3483827	-	413	206576302	fabF	KPK_3463	-	3-oxoacyl-[acyl-carrier-protein] synthase II
3402	 48.52	-1	3483917..3484153	-	78	206577377	acpP	KPK_3464	-	acyl carrier protein
3403	 53.47	0	3484364..3485098	-	244	206577811	fabG	KPK_3465	-	3-oxoacyl-[acyl-carrier-protein] reductase
3404	 60.75	0	3485111..3486040	-	309	206578837	fabD	KPK_3466	-	malonyl CoA-acyl carrier protein transacylase
3405	 58.91	0	3486056..3487009	-	317	206579577	fabH	KPK_3467	-	3-oxoacyl-[acyl-carrier-protein] synthase 3
3406	 56.74	0	3487064..3488161	-	365	206579344	plsX	KPK_3468	-	fatty acid/phospholipid synthesis protein PlsX
3407	 53.45	0	3488365..3488538	-	57	206579800	rpmF	KPK_3469	-	ribosomal protein L32
3408	 51.34	0	3488555..3489076	-	173	206580556	-	KPK_3470	-	hypothetical protein
3409	 56.41	0	3489218..3489802	+	194	206576246	maf_1	KPK_3471	-	septum formation protein Maf
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.