IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3253	 59.07	0	3359555..3360568	+	337	206577117	-	KPK_3313	-	GAF domain/diguanylate cyclase
3254	 52.90	0	3360590..3360727	+	45	206576530	-	KPK_3314	-	hypothetical protein
3255	 57.26	0	3360685..3360801	+	38	206575794	-	KPK_3315	-	hypothetical protein
3256	 46.03	-1	3360921..3361046	+	41	206578076	-	KPK_3316	-	putative lipoprotein
3257	 54.17	0	3361106..3361369	-	87	206579550	-	KPK_3317	-	hypothetical protein
3258	 57.12	0	3361500..3362138	-	212	206580490	leuE	KPK_3318	-	leucine export protein LeuE
3259	 55.74	0	3362228..3363142	-	304	206579913	-	KPK_3319	-	lipid A biosynthesis lauroyl acyltransferase family protein
3260	 35.26	-2	3363141..3363296	+	51	206577251	-	KPK_3320	-	hypothetical protein
3261	 59.00	0	3363799..3364842	-	347	206576960	ansB	KPK_3321	-	L-asparaginase 2
3262	 56.00	0	3365151..3366359	+	402	206579044	-	KPK_3322	-	putative metal-dependent phosphohydrolase
3263	 63.08	0	3366433..3368217	+	594	206578138	-	KPK_3323	-	putative membrane-bound diguanylate cyclase
3264	 61.84	0	3368224..3369114	-	296	206580822	-	KPK_3324	-	transcriptional regulator, LysR family
3265	 61.21	0	3369235..3370737	+	500	206579340	-	KPK_3325	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
3266	 56.20	0	3370813..3371223	-	136	206575900	-	KPK_3326	-	hypothetical protein
3267	 48.51	-1	3371353..3372024	-	223	206580374	-	KPK_3327	-	cyclic diguanylate phosphodiesterase
3268	 55.10	0	3372455..3372601	-	48	206577091	-	KPK_3328	-	putative lipoprotein
3269	 58.29	0	3372674..3373306	-	210	206576499	-	KPK_3329	-	hypothetical protein
3270	 40.31	-2	3373398..3373526	-	42	206579457	-	KPK_3330	-	hypothetical protein
3271	 47.98	-1	3373879..3374076	+	65	206578854	-	KPK_3331	-	hypothetical protein
3272	 60.63	0	3374135..3374929	-	264	206580964	-	KPK_3332	-	transcriptional regulator, AraC family
3273	 57.25	0	3374944..3375081	-	45	206580378	-	KPK_3333	-	hypothetical protein
3274	 63.84	+1	3375007..3377058	+	683	206576309	-	KPK_3334	-	fusaric acid resistance domain protein
3275	 61.50	0	3377051..3377263	+	70	206575808	-	KPK_3335	-	hypothetical protein
3276	 64.17	+1	3377260..3378180	+	306	206580205	-	KPK_3337	-	auxiliary transport protein, membrane fusion protein (MFP) family
3277	 60.53	0	3378174..3379184	-	336	206577977	-	KPK_3336	-	putative cyanide-insensitive terminal oxidase CioB
3278	 58.71	0	3379181..3380587	-	468	206575836	-	KPK_3338	-	putative cyanide-insensitive terminal oxidase CioA
3279	 59.01	0	3380643..3381530	-	295	206576261	-	KPK_3339	-	putative manganese containing catalase
3280	 51.68	0	3381547..3382053	-	168	206577370	-	KPK_3340	-	hypothetical protein
3281	 46.46	-1	3382080..3382574	-	164	206577798	-	KPK_3341	-	hypothetical protein
3282	 53.23	0	3382664..3382849	-	61	206578863	-	KPK_3342	-	hypothetical protein
3283	 41.03	-2	3383233..3383349	-	38	206579278	-	KPK_3343	-	hypothetical protein
3284	 59.21	0	3383460..3384653	+	397	206577810	-	KPK_3344	-	oxidoreductase, zinc-binding dehydrogenase family
3285	 63.60	0	3384761..3384988	+	75	206577213	-	KPK_3345	-	hypothetical protein
3286	 54.76	0	3385043..3385588	-	181	206579609	-	KPK_3346	-	isochorismatase hydrolase family protein
3287	 51.27	0	3385913..3386386	+	157	206575716	-	KPK_3347	-	OsmC family protein
3288	 54.32	0	3386524..3386847	+	107	206579584	-	KPK_3348	-	antibiotic biosynthesis monooxygenase domain protein
3289	 54.96	0	3386840..3387232	+	130	206580057	-	KPK_3349	-	ACT domain protein
3290	 59.80	0	3387229..3387942	+	237	206577700	-	KPK_3350	-	transcriptional regulator, ArsR family
3291	 30.91	-2	3388156..3388320	+	54	206578291	-	KPK_3351	-	hypothetical protein
3292	 45.20	-1	3388750..3388926	-	58	206576448	-	KPK_3352	-	hypothetical protein
3293	 30.61	-2	3389972..3390118	-	48	206577479	-	KPK_3354	-	hypothetical protein
3294	 30.30	-2	3390301..3390993	-	230	206578094	-	KPK_3355	-	putative cyclic diguanylate phosphodiesterase
3295	 36.45	-2	3391350..3392408	-	352	206576280	-	KPK_3356	-	MASE2 domain/diguanylate cyclase
3296	 53.98	0	3392831..3393232	-	133	206577956	-	KPK_3357	-	hypothetical protein
3297	 58.09	0	3393186..3394724	-	512	206577426	-	KPK_3358	-	hypothetical protein
3298	 57.77	0	3394766..3395473	-	235	206579043	-	KPK_3359	-	putative phage tail assembly protein
3299	 54.27	0	3395476..3396225	-	249	206581121	-	KPK_3360	-	phage minor tail protein L
3300	 47.22	-1	3396318..3396677	-	119	206576679	-	KPK_3361	-	hypothetical protein
3301	 52.14	0	3396690..3397040	-	116	206575887	-	KPK_3362	-	phage minor tail protein
3302	 56.10	0	3397040..3397834	-	264	206576003	-	KPK_3363	-	putative major capsid protein
3303	 56.83	0	3398870..3400129	-	419	206579535	-	KPK_3365	-	phage portal protein, HK97 family
3304	 49.36	-1	3400302..3402023	-	573	206580362	-	KPK_3366	-	putative phage terminase, large subunit
3305	 52.64	0	3402023..3402457	-	144	206581076	-	KPK_3367	-	putative phage terminase, small subunit, P27 family
3306	 51.85	0	3402791..3403222	-	143	206579568	-	KPK_3368	-	hypothetical protein
3307	 53.27	0	3403222..3403542	-	106	206576851	-	KPK_3369	-	hypothetical protein
3308	 52.07	0	3403494..3403856	-	120	206580647	-	KPK_3370	-	HNH endonuclease domain protein
3309	 52.08	0	3405339..3405482	-	47	206575789	-	KPK_3371	-	hypothetical protein
3310	 51.28	0	3405457..3405807	-	116	206576526	-	KPK_3372	-	hypothetical protein
3311	 55.36	0	3405804..3406307	-	167	206576574	-	KPK_3373	-	phage lysozyme
3312	 52.34	0	3406279..3406620	-	113	206576544	-	KPK_3374	-	hypothetical protein
3313	 52.45	0	3407286..3407693	-	135	206580517	-	KPK_3375	-	hypothetical protein
3314	 47.46	-1	3407741..3407917	-	58	206576084	-	KPK_3376	-	hypothetical protein
3315	 38.66	-2	3408365..3409435	+	356	206578757	-	KPK_3377	-	hypothetical protein
3316	 34.93	-2	3409437..3410126	+	229	206578971	-	KPK_3379	-	hypothetical protein
3317	 40.80	-2	3410092..3411135	-	347	206579328	-	KPK_3378	-	DNA-cytosine methyltransferase
3318	 43.77	-2	3411225..3411569	-	114	206581112	-	KPK_3380	-	antitermination protein Q
3319	 52.71	0	3411582..3412613	-	343	206580771	-	KPK_3381	-	hypothetical protein
3320	 48.53	-1	3412613..3412816	-	67	206577824	-	KPK_3382	-	hypothetical protein
3321	 51.20	0	3412813..3413310	-	165	206578549	-	KPK_3383	-	LexA DNA binding domain protein
3322	 49.83	-1	3413246..3413536	-	96	206577211	-	KPK_3384	-	hypothetical protein
3323	 47.86	-1	3413548..3413781	-	77	206578989	-	KPK_3385	-	DinI family protein
3324	 47.69	-1	3413942..3414136	+	64	206575831	-	KPK_3386	-	hypothetical protein
3325	 37.39	-2	3414220..3414909	+	229	206579738	-	KPK_3387	-	hypothetical protein
3326	 41.50	-2	3414980..3415726	+	248	206577476	-	KPK_3388	-	oxidoreductase, short chain dehydrogenase/reductase family
3327	 42.86	-2	3415820..3416029	+	69	206577960	-	KPK_3389	-	hypothetical protein
3328	 49.12	-1	3416050..3416277	+	75	206576752	-	KPK_3390	-	hypothetical protein
3329	 51.24	0	3416228..3416428	+	66	206580068	-	KPK_3391	-	hypothetical protein
3330	 47.85	-1	3416724..3418487	-	587	206580435	-	KPK_3392	-	cyclic diguanylate phosphodiesterase (EAL) domain protein
3331	 46.24	-1	3418532..3418717	-	61	206580130	-	KPK_3393	-	hypothetical protein
3332	 53.24	0	3418800..3419246	-	148	206580659	-	KPK_3394	-	hypothetical protein
3333	 53.55	0	3419254..3419718	-	154	206579522	-	KPK_3395	-	hypothetical protein
3334	 50.81	0	3419711..3420694	-	327	206578820	-	KPK_3396	-	hypothetical protein
3335	 51.71	0	3420746..3421300	-	184	206581069	-	KPK_3397	-	hypothetical protein
3336	 45.37	-1	3421303..3421518	-	71	206578126	-	KPK_3398	-	hypothetical protein
3337	 42.82	-2	3421620..3422009	+	129	206581103	-	KPK_3399	-	DNA-binding protein
3338	 49.04	-1	3422355..3422825	-	156	206579937	-	KPK_3400	-	hypothetical protein
3339	 49.23	-1	3423059..3423253	+	64	206577683	-	KPK_3401	-	hypothetical protein
3340	 53.62	0	3423296..3423709	+	137	206576463	-	KPK_3402	-	putative transcriptional regulator
3341	 42.98	-2	3423780..3423893	+	37	206575728	-	KPK_3403	-	hypothetical protein
3342	 48.33	-1	3423964..3424143	+	59	206576465	-	KPK_3404	-	hypothetical protein
3343	 46.34	-1	3424196..3424441	+	81	206577084	-	KPK_3405	-	putative excisionase
3344	 43.35	-2	3424422..3425549	+	375	206577296	-	KPK_3406	-	site-specific recombinase, phage integrase family
3345	 55.48	0	3425667..3426917	-	416	206579025	icd	KPK_3407	-	isocitrate dehydrogenase, NADP-dependent
3346	 59.75	0	3427158..3427808	+	216	206581129	rluE	KPK_3408	-	ribosomal large subunit pseudouridine synthase E
3347	 59.48	0	3427825..3428283	+	152	206580234	-	KPK_3409	-	hydrolase, NUDIX family
3348	 58.18	0	3428340..3429446	+	368	206576946	trmU	KPK_3410	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3349	 60.59	0	3429501..3430142	+	213	206576641	-	KPK_3411	-	hypothetical protein
3350	 56.97	0	3430146..3431516	+	456	206578270	purB	KPK_3412	-	adenylosuccinate lyase
3351	 57.30	0	3431571..3431933	-	120	206577856	-	KPK_3413	-	cupin domain protein
3352	 63.69	+1	3432017..3432823	-	268	206578780	-	KPK_3414	-	transcriptional regulator, AraC family
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.